ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 72 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 231 |
| AciI | CCGC | 2 cut(s) | 254, 403 |
| AclWI | GGATC | 1 cut(s) | 179 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 402 |
| AflIII | ACRYGT | 1 cut(s) | 226 |
| AgsI | TTSAA | 1 cut(s) | 13 |
| Alw26I | GTCTC | 1 cut(s) | 120 |
| AlwI | GGATC | 1 cut(s) | 179 |
| Ama87I | CYCGRG | 1 cut(s) | 372 |
| ApeKI | GCWGC | 3 cut(s) | 128, 251, 400 |
| AseI | ATTAAT | 2 cut(s) | 414, 420 |
| AsuC2I | CCSGG | 2 cut(s) | 65, 318 |
| AsuHPI | GGTGA | 1 cut(s) | 37 |
| AvaI | CYCGRG | 1 cut(s) | 372 |
| BanII | GRGCYC | 2 cut(s) | 63, 113 |
| BbvI | GCAGC | 3 cut(s) | 115, 263, 387 |
| BcnI | CCSGG | 2 cut(s) | 65, 318 |
| BcoDI | GTCTC | 1 cut(s) | 120 |
| BfaI | CTAG | 2 cut(s) | 56, 276 |
| BisI | GCNGC | 4 cut(s) | 129, 252, 401, 404 |
| BlsI | GCNGC | 4 cut(s) | 130, 253, 402, 405 |
| Bme1390I | CCNGG | 2 cut(s) | 65, 318 |
| BmeT110I | CYCGRG | 1 cut(s) | 372 |
| BmiI | GGNNCC | 2 cut(s) | 62, 315 |
| BmrFI | CCNGG | 2 cut(s) | 65, 318 |
| BmsI | GCATC | 1 cut(s) | 70 |
| BpuMI | CCSGG | 2 cut(s) | 65, 318 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 45, 75 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 402 |
| Bse1I | ACTGG | 1 cut(s) | 143 |
| BseGI | GGATG | 3 cut(s) | 313, 337, 444 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 402 |
| BseMII | CTCAG | 1 cut(s) | 150 |
| BseNI | ACTGG | 1 cut(s) | 143 |
| BseXI | GCAGC | 3 cut(s) | 115, 263, 387 |
| BsgI | GTGCAG | 1 cut(s) | 270 |
| BsiHKCI | CYCGRG | 1 cut(s) | 372 |
| BsiSI | CCGG | 2 cut(s) | 64, 317 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 402 |
| BsmAI | GTCTC | 1 cut(s) | 120 |
| BsmBI | CGTCTC | 1 cut(s) | 120 |
| BsoBI | CYCGRG | 1 cut(s) | 372 |
| Bsp1286I | GDGCHC | 2 cut(s) | 63, 113 |
| Bsp143I | GATC | 3 cut(s) | 171, 283, 295 |
| BspACI | CCGC | 2 cut(s) | 254, 403 |
| BspCNI | CTCAG | 1 cut(s) | 151 |
| BspLI | GGNNCC | 2 cut(s) | 62, 315 |
| BspPI | GGATC | 1 cut(s) | 179 |
| BsrI | ACTGG | 1 cut(s) | 143 |
| BssMI | GATC | 3 cut(s) | 171, 283, 295 |
| Bst4CI | ACNGT | 1 cut(s) | 353 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 248 |
| BstC8I | GCNNGC | 1 cut(s) | 369 |
| BstDEI | CTNAG | 1 cut(s) | 159 |
| BstF5I | GGATG | 3 cut(s) | 313, 337, 444 |
| BstKTI | GATC | 3 cut(s) | 174, 286, 298 |
| BstMAI | GTCTC | 1 cut(s) | 120 |
| BstMBI | GATC | 3 cut(s) | 171, 283, 295 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 248, 272, 400 |
| BstNSI | RCATGY | 4 cut(s) | 8, 36, 230, 371 |
| BstSCI | CCNGG | 2 cut(s) | 63, 316 |
| BstV1I | GCAGC | 3 cut(s) | 115, 263, 387 |
| BtsCI | GGATG | 3 cut(s) | 313, 337, 444 |
| Cac8I | GCNNGC | 1 cut(s) | 369 |
| CviAII | CATG | 4 cut(s) | 5, 33, 227, 368 |
| CviJI | RGCY | 8 cut(s) | 51, 61, 68, 111, 128, 314, 321, 444 |
| CviKI_1 | RGCY | 8 cut(s) | 51, 61, 68, 111, 128, 314, 321, 444 |
| DdeI | CTNAG | 1 cut(s) | 159 |
| DpnI | GATC | 3 cut(s) | 173, 285, 297 |
| DpnII | GATC | 3 cut(s) | 171, 283, 295 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 231 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 231 |
| Eco24I | GRGCYC | 2 cut(s) | 63, 113 |
| Eco88I | CYCGRG | 1 cut(s) | 372 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| EcoT38I | GRGCYC | 2 cut(s) | 63, 113 |
| Esp3I | CGTCTC | 1 cut(s) | 120 |
| FaeI | CATG | 4 cut(s) | 8, 36, 230, 371 |
| FatI | CATG | 4 cut(s) | 4, 32, 226, 367 |
| Fnu4HI | GCNGC | 4 cut(s) | 129, 252, 401, 404 |
| FokI | GGATG | 3 cut(s) | 320, 344, 451 |
| FriOI | GRGCYC | 2 cut(s) | 63, 113 |
| Fsp4HI | GCNGC | 4 cut(s) | 129, 252, 401, 404 |
| FspBI | CTAG | 2 cut(s) | 56, 276 |
| GluI | GCNGC | 4 cut(s) | 129, 252, 401, 404 |
| HapII | CCGG | 2 cut(s) | 64, 317 |
| Hin1II | CATG | 4 cut(s) | 8, 36, 230, 371 |
| HincII | GTYRAC | 1 cut(s) | 148 |
| HindII | GTYRAC | 1 cut(s) | 148 |
| HinfI | GANTC | 2 cut(s) | 220, 232 |
| HpaII | CCGG | 2 cut(s) | 64, 317 |
| HphI | GGTGA | 1 cut(s) | 37 |
| Hpy166II | GTNNAC | 1 cut(s) | 148 |
| Hpy188I | TCNGA | 2 cut(s) | 160, 171 |
| Hpy188III | TCNNGA | 4 cut(s) | 13, 77, 188, 236 |
| Hpy8I | GTNNAC | 1 cut(s) | 148 |
| Hpy99I | CGWCG | 1 cut(s) | 394 |
| HpyAV | CCTTC | 1 cut(s) | 88 |
| HpyCH4III | ACNGT | 1 cut(s) | 353 |
| HpyCH4IV | ACGT | 1 cut(s) | 389 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 32, 199, 251, 328 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 248, 272, 400 |
| HpyF3I | CTNAG | 1 cut(s) | 159 |
| HpySE526I | ACGT | 1 cut(s) | 389 |
| Hsp92II | CATG | 4 cut(s) | 8, 36, 230, 371 |
| Kzo9I | GATC | 3 cut(s) | 171, 283, 295 |
| LmnI | GCTCC | 2 cut(s) | 66, 319 |
| LpnPI | CCDG | 6 cut(s) | 25, 77, 85, 156, 314, 330 |
| Lsp1109I | GCAGC | 3 cut(s) | 115, 263, 387 |
| LweI | GCATC | 1 cut(s) | 70 |
| MaeI | CTAG | 2 cut(s) | 56, 276 |
| MaeII | ACGT | 1 cut(s) | 389 |
| MalI | GATC | 3 cut(s) | 173, 285, 297 |
| MboI | GATC | 3 cut(s) | 171, 283, 295 |
| MhlI | GDGCHC | 2 cut(s) | 63, 113 |
| MluCI | AATT | 4 cut(s) | 16, 154, 261, 411 |
| MlyI | GAGTC | 1 cut(s) | 241 |
| MmeI | TCCRAC | 1 cut(s) | 149 |
| MnlI | CCTC | 5 cut(s) | 154, 304, 368, 406, 455 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MseI | TTAA | 4 cut(s) | 135, 363, 414, 420 |
| MspA1I | CMGCKG | 1 cut(s) | 254 |
| MspI | CCGG | 2 cut(s) | 64, 317 |
| MspR9I | CCNGG | 2 cut(s) | 65, 318 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 248, 272, 400 |
| NciI | CCSGG | 2 cut(s) | 65, 318 |
| NdeII | GATC | 3 cut(s) | 171, 283, 295 |
| NlaIII | CATG | 4 cut(s) | 8, 36, 230, 371 |
| NlaIV | GGNNCC | 2 cut(s) | 62, 315 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| NspI | RCATGY | 4 cut(s) | 8, 36, 230, 371 |
| PaeI | GCATGC | 1 cut(s) | 371 |
| PaeR7I | CTCGAG | 1 cut(s) | 372 |
| PciI | ACATGT | 1 cut(s) | 226 |
| PfeI | GAWTC | 1 cut(s) | 220 |
| PkrI | GCNGC | 4 cut(s) | 130, 253, 402, 405 |
| PleI | GAGTC | 1 cut(s) | 240 |
| PpsI | GAGTC | 1 cut(s) | 240 |
| PscI | ACATGT | 1 cut(s) | 226 |
| PshBI | ATTAAT | 2 cut(s) | 414, 420 |
| PsiI | TTATAA | 1 cut(s) | 72 |
| PspN4I | GGNNCC | 2 cut(s) | 62, 315 |
| PspXI | VCTCGAGB | 1 cut(s) | 372 |
| SaqAI | TTAA | 4 cut(s) | 135, 363, 414, 420 |
| SatI | GCNGC | 4 cut(s) | 129, 252, 401, 404 |
| Sau3AI | GATC | 3 cut(s) | 171, 283, 295 |
| SchI | GAGTC | 1 cut(s) | 241 |
| ScrFI | CCNGG | 2 cut(s) | 65, 318 |
| SduI | GDGCHC | 2 cut(s) | 63, 113 |
| SetI | ASST | 5 cut(s) | 165, 281, 379, 385, 392 |
| SfaNI | GCATC | 1 cut(s) | 70 |
| Sfr274I | CTCGAG | 1 cut(s) | 372 |
| SlaI | CTCGAG | 1 cut(s) | 372 |
| SmlI | CTYRAG | 1 cut(s) | 372 |
| SmoI | CTYRAG | 1 cut(s) | 372 |
| SphI | GCATGC | 1 cut(s) | 371 |
| Sse9I | AATT | 4 cut(s) | 16, 154, 261, 411 |
| SsiI | CCGC | 2 cut(s) | 254, 403 |
| SspI | AATATT | 1 cut(s) | 418 |
| SspMI | CTAG | 2 cut(s) | 56, 276 |
| StyD4I | CCNGG | 2 cut(s) | 63, 316 |
| TaaI | ACNGT | 1 cut(s) | 353 |
| TaiI | ACGT | 1 cut(s) | 392 |
| TaqI | TCGA | 4 cut(s) | 78, 187, 223, 373 |
| TasI | AATT | 4 cut(s) | 16, 154, 261, 411 |
| TauI | GCSGC | 1 cut(s) | 406 |
| TfiI | GAWTC | 1 cut(s) | 220 |
| Tru1I | TTAA | 4 cut(s) | 135, 363, 414, 420 |
| Tru9I | TTAA | 4 cut(s) | 135, 363, 414, 420 |
| TseI | GCWGC | 3 cut(s) | 128, 251, 400 |
| TspDTI | ATGAA | 1 cut(s) | 107 |
| VspI | ATTAAT | 2 cut(s) | 414, 420 |
| XceI | RCATGY | 4 cut(s) | 8, 36, 230, 371 |
| XhoI | CTCGAG | 1 cut(s) | 372 |
| XspI | CTAG | 2 cut(s) | 56, 276 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |