Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 412 |
| AciI | CCGC | 1 cut(s) | 293 |
| AclWI | GGATC | 2 cut(s) | 244, 513 |
| AcsI | RAATTY | 1 cut(s) | 594 |
| AcuI | CTGAAG | 1 cut(s) | 65 |
| AdeI | CACNNNGTG | 1 cut(s) | 725 |
| AfaI | GTAC | 1 cut(s) | 521 |
| AgsI | TTSAA | 4 cut(s) | 89, 209, 746, 891 |
| AjnI | CCWGG | 1 cut(s) | 323 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 599, 631 |
| AluBI | AGCT | 4 cut(s) | 74, 559, 669, 679 |
| AluI | AGCT | 4 cut(s) | 74, 559, 669, 679 |
| Alw21I | GWGCWC | 2 cut(s) | 395, 561 |
| Alw26I | GTCTC | 1 cut(s) | 160 |
| AlwI | GGATC | 2 cut(s) | 244, 513 |
| Ama87I | CYCGRG | 1 cut(s) | 309 |
| AoxI | GGCC | 4 cut(s) | 54, 94, 225, 306 |
| ApeKI | GCWGC | 1 cut(s) | 679 |
| ApoI | RAATTY | 1 cut(s) | 594 |
| AspA2I | CCTAGG | 1 cut(s) | 97 |
| AspS9I | GGNCC | 3 cut(s) | 40, 55, 307 |
| AsuC2I | CCSGG | 2 cut(s) | 310, 311 |
| AsuHPI | GGTGA | 1 cut(s) | 737 |
| AsuII | TTCGAA | 1 cut(s) | 301 |
| AvaI | CYCGRG | 1 cut(s) | 309 |
| AvaII | GGWCC | 1 cut(s) | 40 |
| AvrII | CCTAGG | 1 cut(s) | 97 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 511, 544 |
| BanII | GRGCYC | 1 cut(s) | 561 |
| Bbv12I | GWGCWC | 2 cut(s) | 395, 561 |
| BbvI | GCAGC | 1 cut(s) | 666 |
| BccI | CCATC | 3 cut(s) | 198, 562, 646 |
| BciT130I | CCWGG | 1 cut(s) | 325 |
| BclI | TGATCA | 2 cut(s) | 340, 493 |
| BcnI | CCSGG | 2 cut(s) | 310, 311 |
| BcoDI | GTCTC | 1 cut(s) | 160 |
| BfaI | CTAG | 3 cut(s) | 98, 408, 807 |
| BfmI | CTRYAG | 1 cut(s) | 523 |
| BisI | GCNGC | 1 cut(s) | 680 |
| BlnI | CCTAGG | 1 cut(s) | 97 |
| BlsI | GCNGC | 1 cut(s) | 681 |
| Bme1390I | CCNGG | 3 cut(s) | 310, 311, 325 |
| Bme18I | GGWCC | 1 cut(s) | 40 |
| BmeT110I | CYCGRG | 1 cut(s) | 309 |
| BmgT120I | GGNCC | 3 cut(s) | 40, 55, 307 |
| BmrFI | CCNGG | 3 cut(s) | 310, 311, 325 |
| BmsI | GCATC | 2 cut(s) | 691, 804 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 93, 125, 119, 151 |
| Bpu10I | CCTNAGC | 1 cut(s) | 263 |
| Bpu14I | TTCGAA | 1 cut(s) | 301 |
| BpuEI | CTTGAG | 2 cut(s) | 350, 494 |
| BpuMI | CCSGG | 2 cut(s) | 310, 311 |
| BsaJI | CCNNGG | 2 cut(s) | 97, 309 |
| Bse1I | ACTGG | 1 cut(s) | 466 |
| BseBI | CCWGG | 1 cut(s) | 325 |
| BseDI | CCNNGG | 2 cut(s) | 97, 309 |
| BseGI | GGATG | 1 cut(s) | 417 |
| BseMII | CTCAG | 4 cut(s) | 152, 171, 268, 540 |
| BseNI | ACTGG | 1 cut(s) | 466 |
| BseRI | GAGGAG | 4 cut(s) | 529, 566, 569, 679 |
| BseXI | GCAGC | 1 cut(s) | 666 |
| BsgI | GTGCAG | 2 cut(s) | 549, 782 |
| BshFI | GGCC | 4 cut(s) | 56, 96, 227, 308 |
| BsiHKAI | GWGCWC | 2 cut(s) | 395, 561 |
| BsiHKCI | CYCGRG | 1 cut(s) | 309 |
| BsiSI | CCGG | 1 cut(s) | 310 |
| BslFI | GGGAC | 1 cut(s) | 281 |
| BsmAI | GTCTC | 1 cut(s) | 160 |
| BsmFI | GGGAC | 1 cut(s) | 281 |
| BsnI | GGCC | 4 cut(s) | 56, 96, 227, 308 |
| BsoBI | CYCGRG | 1 cut(s) | 309 |
| Bsp119I | TTCGAA | 1 cut(s) | 301 |
| Bsp1286I | GDGCHC | 2 cut(s) | 395, 561 |
| Bsp143I | GATC | 4 cut(s) | 249, 340, 493, 505 |
| BspACI | CCGC | 1 cut(s) | 293 |
| BspANI | GGCC | 4 cut(s) | 56, 96, 227, 308 |
| BspCNI | CTCAG | 4 cut(s) | 151, 170, 267, 541 |
| BspHI | TCATGA | 1 cut(s) | 148 |
| BspPI | GGATC | 2 cut(s) | 244, 513 |
| BspT104I | TTCGAA | 1 cut(s) | 301 |
| BsrI | ACTGG | 1 cut(s) | 466 |
| BssECI | CCNNGG | 2 cut(s) | 97, 309 |
| BssMI | GATC | 4 cut(s) | 249, 340, 493, 505 |
| BssT1I | CCWWGG | 1 cut(s) | 97 |
| Bst2UI | CCWGG | 1 cut(s) | 325 |
| Bst4CI | ACNGT | 3 cut(s) | 242, 397, 527 |
| Bst6I | CTCTTC | 4 cut(s) | 174, 216, 602, 741 |
| BstBI | TTCGAA | 1 cut(s) | 301 |
| BstC8I | GCNNGC | 3 cut(s) | 94, 431, 897 |
| BstDEI | CTNAG | 6 cut(s) | 138, 157, 254, 263, 549, 675 |
| BstF5I | GGATG | 1 cut(s) | 417 |
| BstKTI | GATC | 4 cut(s) | 252, 343, 496, 508 |
| BstMAI | GTCTC | 1 cut(s) | 160 |
| BstMBI | GATC | 4 cut(s) | 249, 340, 493, 505 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 334 |
| BstNI | CCWGG | 1 cut(s) | 325 |
| BstSCI | CCNGG | 3 cut(s) | 308, 309, 323 |
| BstSFI | CTRYAG | 1 cut(s) | 523 |
| BstV1I | GCAGC | 1 cut(s) | 666 |
| BstX2I | RGATCY | 2 cut(s) | 249, 505 |
| BstYI | RGATCY | 2 cut(s) | 249, 505 |
| BsuRI | GGCC | 4 cut(s) | 56, 96, 227, 308 |
| BtsCI | GGATG | 1 cut(s) | 417 |
| BtsI | GCAGTG | 2 cut(s) | 537, 654 |
| BtsIMutI | CAGTG | 5 cut(s) | 393, 532, 537, 654, 784 |
| Cac8I | GCNNGC | 3 cut(s) | 94, 431, 897 |
| CciI | TCATGA | 1 cut(s) | 148 |
| Cfr13I | GGNCC | 3 cut(s) | 40, 55, 307 |
| Cfr9I | CCCGGG | 1 cut(s) | 309 |
| Csp6I | GTAC | 1 cut(s) | 520 |
| CviAII | CATG | 4 cut(s) | 67, 149, 641, 700 |
| CviQI | GTAC | 1 cut(s) | 520 |
| DdeI | CTNAG | 6 cut(s) | 138, 157, 254, 263, 549, 675 |
| DpnI | GATC | 4 cut(s) | 251, 342, 495, 507 |
| DpnII | GATC | 4 cut(s) | 249, 340, 493, 505 |
| DraIII | CACNNNGTG | 1 cut(s) | 725 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 412 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 412 |
| Eam1104I | CTCTTC | 4 cut(s) | 174, 216, 602, 741 |
| EarI | CTCTTC | 4 cut(s) | 174, 216, 602, 741 |
| Ecl136II | GAGCTC | 1 cut(s) | 559 |
| Eco130I | CCWWGG | 1 cut(s) | 97 |
| Eco147I | AGGCCT | 1 cut(s) | 96 |
| Eco24I | GRGCYC | 1 cut(s) | 561 |
| Eco47I | GGWCC | 1 cut(s) | 40 |
| Eco53kI | GAGCTC | 1 cut(s) | 559 |
| Eco57I | CTGAAG | 1 cut(s) | 65 |
| Eco88I | CYCGRG | 1 cut(s) | 309 |
| EcoICRI | GAGCTC | 1 cut(s) | 559 |
| EcoRII | CCWGG | 1 cut(s) | 323 |
| EcoT14I | CCWWGG | 1 cut(s) | 97 |
| EcoT38I | GRGCYC | 1 cut(s) | 561 |
| ErhI | CCWWGG | 1 cut(s) | 97 |
| FaeI | CATG | 4 cut(s) | 70, 152, 644, 703 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 63, 95, 312, 344 |
| FaqI | GGGAC | 1 cut(s) | 281 |
| FatI | CATG | 4 cut(s) | 66, 148, 640, 699 |
| FbaI | TGATCA | 2 cut(s) | 340, 493 |
| Fnu4HI | GCNGC | 1 cut(s) | 680 |
| FokI | GGATG | 1 cut(s) | 424 |
| FriOI | GRGCYC | 1 cut(s) | 561 |
| Fsp4HI | GCNGC | 1 cut(s) | 680 |
| FspBI | CTAG | 3 cut(s) | 98, 408, 807 |
| GluI | GCNGC | 1 cut(s) | 680 |
| HaeIII | GGCC | 4 cut(s) | 56, 96, 227, 308 |
| HapII | CCGG | 1 cut(s) | 310 |
| Hin1II | CATG | 4 cut(s) | 70, 152, 644, 703 |
| HinfI | GANTC | 3 cut(s) | 278, 332, 435 |
| HpaII | CCGG | 1 cut(s) | 310 |
| HphI | GGTGA | 1 cut(s) | 737 |
| Hpy166II | GTNNAC | 3 cut(s) | 40, 400, 728 |
| Hpy188I | TCNGA | 4 cut(s) | 257, 283, 493, 663 |
| Hpy188III | TCNNGA | 4 cut(s) | 149, 511, 695, 903 |
| Hpy8I | GTNNAC | 3 cut(s) | 40, 400, 728 |
| HpyAV | CCTTC | 4 cut(s) | 55, 215, 380, 580 |
| HpyCH4III | ACNGT | 3 cut(s) | 242, 397, 527 |
| HpyCH4IV | ACGT | 1 cut(s) | 84 |
| HpyCH4V | TGCA | 4 cut(s) | 530, 682, 799, 817 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 334 |
| HpyF3I | CTNAG | 6 cut(s) | 138, 157, 254, 263, 549, 675 |
| HpySE526I | ACGT | 1 cut(s) | 84 |
| Hsp92II | CATG | 4 cut(s) | 70, 152, 644, 703 |
| Ksp22I | TGATCA | 2 cut(s) | 340, 493 |
| Kzo9I | GATC | 4 cut(s) | 249, 340, 493, 505 |
| LmnI | GCTCC | 3 cut(s) | 390, 556, 666 |
| Lsp1109I | GCAGC | 1 cut(s) | 666 |
| LweI | GCATC | 2 cut(s) | 691, 804 |
| MaeI | CTAG | 3 cut(s) | 98, 408, 807 |
| MaeII | ACGT | 1 cut(s) | 84 |
| MalI | GATC | 4 cut(s) | 251, 342, 495, 507 |
| MboI | GATC | 4 cut(s) | 249, 340, 493, 505 |
| MboII | GAAGA | 8 cut(s) | 58, 191, 233, 493, 619, 758, 832, 835 |
| MflI | RGATCY | 2 cut(s) | 249, 505 |
| MhlI | GDGCHC | 2 cut(s) | 395, 561 |
| MluCI | AATT | 5 cut(s) | 31, 349, 594, 621, 885 |
| MlyI | GAGTC | 3 cut(s) | 287, 341, 444 |
| MmeI | TCCRAC | 1 cut(s) | 597 |
| MseI | TTAA | 5 cut(s) | 29, 318, 443, 591, 884 |
| MslI | CAYNNNNRTG | 1 cut(s) | 704 |
| MspI | CCGG | 1 cut(s) | 310 |
| MspR9I | CCNGG | 3 cut(s) | 310, 311, 325 |
| MvaI | CCWGG | 1 cut(s) | 325 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 334 |
| NciI | CCSGG | 2 cut(s) | 310, 311 |
| NdeII | GATC | 4 cut(s) | 249, 340, 493, 505 |
| NlaIII | CATG | 4 cut(s) | 70, 152, 644, 703 |
| NspV | TTCGAA | 1 cut(s) | 301 |
| PagI | TCATGA | 1 cut(s) | 148 |
| PceI | AGGCCT | 1 cut(s) | 96 |
| PkrI | GCNGC | 1 cut(s) | 681 |
| PleI | GAGTC | 3 cut(s) | 286, 340, 443 |
| PpsI | GAGTC | 3 cut(s) | 286, 340, 443 |
| Psp124BI | GAGCTC | 1 cut(s) | 561 |
| Psp6I | CCWGG | 1 cut(s) | 323 |
| PspGI | CCWGG | 1 cut(s) | 323 |
| PspPI | GGNCC | 3 cut(s) | 40, 55, 307 |
| PsuI | RGATCY | 2 cut(s) | 249, 505 |
| RsaI | GTAC | 1 cut(s) | 521 |
| RsaNI | GTAC | 1 cut(s) | 520 |
| RseI | CAYNNNNRTG | 1 cut(s) | 704 |
| SacI | GAGCTC | 1 cut(s) | 561 |
| SaqAI | TTAA | 5 cut(s) | 29, 318, 443, 591, 884 |
| SatI | GCNGC | 1 cut(s) | 680 |
| Sau3AI | GATC | 4 cut(s) | 249, 340, 493, 505 |
| Sau96I | GGNCC | 3 cut(s) | 40, 55, 307 |
| SchI | GAGTC | 3 cut(s) | 287, 341, 444 |
| ScrFI | CCNGG | 3 cut(s) | 310, 311, 325 |
| SduI | GDGCHC | 2 cut(s) | 395, 561 |
| SfaNI | GCATC | 2 cut(s) | 691, 804 |
| SfcI | CTRYAG | 1 cut(s) | 523 |
| SfuI | TTCGAA | 1 cut(s) | 301 |
| SinI | GGWCC | 1 cut(s) | 40 |
| SmaI | CCCGGG | 1 cut(s) | 311 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 704 |
| SmlI | CTYRAG | 2 cut(s) | 329, 509 |
| SmoI | CTYRAG | 2 cut(s) | 329, 509 |
| Sse9I | AATT | 5 cut(s) | 31, 349, 594, 621, 885 |
| SseBI | AGGCCT | 1 cut(s) | 96 |
| SsiI | CCGC | 1 cut(s) | 293 |
| SspI | AATATT | 1 cut(s) | 742 |
| SspMI | CTAG | 3 cut(s) | 98, 408, 807 |
| SstI | GAGCTC | 1 cut(s) | 561 |
| StuI | AGGCCT | 1 cut(s) | 96 |
| StyD4I | CCNGG | 3 cut(s) | 308, 309, 323 |
| StyI | CCWWGG | 1 cut(s) | 97 |
| TaaI | ACNGT | 3 cut(s) | 242, 397, 527 |
| TaiI | ACGT | 1 cut(s) | 87 |
| TaqI | TCGA | 4 cut(s) | 171, 301, 561, 600 |
| TasI | AATT | 5 cut(s) | 31, 349, 594, 621, 885 |
| Tru1I | TTAA | 5 cut(s) | 29, 318, 443, 591, 884 |
| Tru9I | TTAA | 5 cut(s) | 29, 318, 443, 591, 884 |
| TscAI | CASTG | 5 cut(s) | 400, 532, 537, 654, 784 |
| TseI | GCWGC | 1 cut(s) | 679 |
| TspDTI | ATGAA | 4 cut(s) | 17, 137, 165, 234 |
| TspMI | CCCGGG | 1 cut(s) | 309 |
| TspRI | CASTG | 5 cut(s) | 400, 532, 537, 654, 784 |
| VpaK11BI | GGWCC | 1 cut(s) | 40 |
| XapI | RAATTY | 1 cut(s) | 594 |
| XmaI | CCCGGG | 1 cut(s) | 309 |
| XmaJI | CCTAGG | 1 cut(s) | 97 |
| XspI | CTAG | 3 cut(s) | 98, 408, 807 |