Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 824 |
| Acc36I | ACCTGC | 2 cut(s) | 7, 824 |
| AccB1I | GGYRCC | 1 cut(s) | 761 |
| AccIII | TCCGGA | 1 cut(s) | 229 |
| AciI | CCGC | 2 cut(s) | 179, 209 |
| AclWI | GGATC | 3 cut(s) | 47, 55, 68 |
| AcsI | RAATTY | 2 cut(s) | 73, 169 |
| AdeI | CACNNNGTG | 1 cut(s) | 647 |
| AfaI | GTAC | 2 cut(s) | 31, 402 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 386, 391 |
| AflIII | ACRYGT | 2 cut(s) | 403, 779 |
| AhlI | ACTAGT | 1 cut(s) | 323 |
| AjiI | CACGTC | 1 cut(s) | 782 |
| AjnI | CCWGG | 1 cut(s) | 385 |
| AleI | CACNNNNGTG | 1 cut(s) | 827 |
| AluBI | AGCT | 5 cut(s) | 157, 188, 364, 377, 600 |
| AluI | AGCT | 5 cut(s) | 157, 188, 364, 377, 600 |
| Alw21I | GWGCWC | 1 cut(s) | 321 |
| Alw26I | GTCTC | 1 cut(s) | 18 |
| AlwI | GGATC | 3 cut(s) | 47, 55, 68 |
| Aor13HI | TCCGGA | 1 cut(s) | 229 |
| AoxI | GGCC | 3 cut(s) | 68, 561, 882 |
| ApeKI | GCWGC | 2 cut(s) | 374, 865 |
| ApoI | RAATTY | 2 cut(s) | 73, 169 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 171 |
| AspS9I | GGNCC | 2 cut(s) | 98, 562 |
| AsuHPI | GGTGA | 1 cut(s) | 760 |
| AvaII | GGWCC | 1 cut(s) | 98 |
| BamHI | GGATCC | 1 cut(s) | 60 |
| BanI | GGYRCC | 1 cut(s) | 761 |
| Bbv12I | GWGCWC | 1 cut(s) | 321 |
| BbvI | GCAGC | 2 cut(s) | 386, 877 |
| BccI | CCATC | 5 cut(s) | 6, 124, 131, 470, 752 |
| BciT130I | CCWGG | 1 cut(s) | 387 |
| BcoDI | GTCTC | 1 cut(s) | 18 |
| BcuI | ACTAGT | 1 cut(s) | 323 |
| BfaI | CTAG | 4 cut(s) | 324, 597, 635, 645 |
| BfuAI | ACCTGC | 2 cut(s) | 7, 824 |
| BisI | GCNGC | 2 cut(s) | 375, 866 |
| BlsI | GCNGC | 2 cut(s) | 376, 867 |
| Bme1390I | CCNGG | 1 cut(s) | 387 |
| Bme18I | GGWCC | 1 cut(s) | 98 |
| BmgBI | CACGTC | 1 cut(s) | 782 |
| BmgT120I | GGNCC | 2 cut(s) | 98, 562 |
| BmiI | GGNNCC | 4 cut(s) | 62, 100, 564, 763 |
| BmrFI | CCNGG | 1 cut(s) | 387 |
| BmsI | GCATC | 1 cut(s) | 802 |
| Bsa29I | ATCGAT | 1 cut(s) | 756 |
| BsaJI | CCNNGG | 6 cut(s) | 56, 65, 385, 386, 772, 885 |
| BsaWI | WCCGGW | 1 cut(s) | 229 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 386, 391 |
| Bse1I | ACTGG | 2 cut(s) | 86, 467 |
| BseAI | TCCGGA | 1 cut(s) | 229 |
| BseBI | CCWGG | 1 cut(s) | 387 |
| BseCI | ATCGAT | 1 cut(s) | 756 |
| BseDI | CCNNGG | 6 cut(s) | 56, 65, 385, 386, 772, 885 |
| BseGI | GGATG | 3 cut(s) | 55, 187, 481 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 386, 391 |
| BseMII | CTCAG | 1 cut(s) | 463 |
| BseNI | ACTGG | 2 cut(s) | 86, 467 |
| BseXI | GCAGC | 2 cut(s) | 386, 877 |
| BshFI | GGCC | 3 cut(s) | 70, 563, 884 |
| BshNI | GGYRCC | 1 cut(s) | 761 |
| BshVI | ATCGAT | 1 cut(s) | 756 |
| BsiHKAI | GWGCWC | 1 cut(s) | 321 |
| BsiSI | CCGG | 1 cut(s) | 230 |
| BslFI | GGGAC | 2 cut(s) | 84, 623 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 386, 391 |
| BsmAI | GTCTC | 1 cut(s) | 18 |
| BsmBI | CGTCTC | 1 cut(s) | 18 |
| BsmFI | GGGAC | 2 cut(s) | 84, 623 |
| BsnI | GGCC | 3 cut(s) | 70, 563, 884 |
| Bsp1286I | GDGCHC | 1 cut(s) | 321 |
| Bsp13I | TCCGGA | 1 cut(s) | 229 |
| Bsp143I | GATC | 3 cut(s) | 52, 60, 124 |
| BspACI | CCGC | 2 cut(s) | 179, 209 |
| BspANI | GGCC | 3 cut(s) | 70, 563, 884 |
| BspCNI | CTCAG | 1 cut(s) | 462 |
| BspDI | ATCGAT | 1 cut(s) | 756 |
| BspEI | TCCGGA | 1 cut(s) | 229 |
| BspLI | GGNNCC | 4 cut(s) | 62, 100, 564, 763 |
| BspMI | ACCTGC | 2 cut(s) | 7, 824 |
| BspPI | GGATC | 3 cut(s) | 47, 55, 68 |
| BspQI | GCTCTTC | 1 cut(s) | 337 |
| BspT107I | GGYRCC | 1 cut(s) | 761 |
| BsrI | ACTGG | 2 cut(s) | 86, 467 |
| BssECI | CCNNGG | 6 cut(s) | 56, 65, 385, 386, 772, 885 |
| BssMI | GATC | 3 cut(s) | 52, 60, 124 |
| BssT1I | CCWWGG | 4 cut(s) | 56, 65, 772, 885 |
| Bst2UI | CCWGG | 1 cut(s) | 387 |
| Bst4CI | ACNGT | 4 cut(s) | 29, 728, 748, 826 |
| Bst6I | CTCTTC | 2 cut(s) | 337, 454 |
| BstC8I | GCNNGC | 1 cut(s) | 618 |
| BstDEI | CTNAG | 3 cut(s) | 8, 212, 449 |
| BstF5I | GGATG | 3 cut(s) | 55, 187, 481 |
| BstKTI | GATC | 3 cut(s) | 55, 63, 127 |
| BstMAI | GTCTC | 1 cut(s) | 18 |
| BstMBI | GATC | 3 cut(s) | 52, 60, 124 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 185, 613 |
| BstNI | CCWGG | 1 cut(s) | 387 |
| BstNSI | RCATGY | 1 cut(s) | 407 |
| BstSCI | CCNGG | 1 cut(s) | 385 |
| BstV1I | GCAGC | 2 cut(s) | 386, 877 |
| BstX2I | RGATCY | 1 cut(s) | 60 |
| BstYI | RGATCY | 1 cut(s) | 60 |
| Bsu15I | ATCGAT | 1 cut(s) | 756 |
| BsuRI | GGCC | 3 cut(s) | 70, 563, 884 |
| BsuTUI | ATCGAT | 1 cut(s) | 756 |
| BtrI | CACGTC | 1 cut(s) | 782 |
| BtsCI | GGATG | 3 cut(s) | 55, 187, 481 |
| BtsIMutI | CAGTG | 1 cut(s) | 854 |
| BveI | ACCTGC | 2 cut(s) | 7, 824 |
| Cac8I | GCNNGC | 1 cut(s) | 618 |
| Cfr13I | GGNCC | 2 cut(s) | 98, 562 |
| ClaI | ATCGAT | 1 cut(s) | 756 |
| Csp6I | GTAC | 2 cut(s) | 30, 401 |
| CspCI | CAANNNNNGTGG | 1 cut(s) | 858 |
| CviAII | CATG | 2 cut(s) | 404, 518 |
| CviQI | GTAC | 2 cut(s) | 30, 401 |
| DdeI | CTNAG | 3 cut(s) | 8, 212, 449 |
| DpnI | GATC | 3 cut(s) | 54, 62, 126 |
| DpnII | GATC | 3 cut(s) | 52, 60, 124 |
| DraIII | CACNNNGTG | 1 cut(s) | 647 |
| Eam1104I | CTCTTC | 2 cut(s) | 337, 454 |
| EarI | CTCTTC | 2 cut(s) | 337, 454 |
| Eco130I | CCWWGG | 4 cut(s) | 56, 65, 772, 885 |
| Eco147I | AGGCCT | 1 cut(s) | 884 |
| Eco47I | GGWCC | 1 cut(s) | 98 |
| EcoRII | CCWGG | 1 cut(s) | 385 |
| EcoT14I | CCWWGG | 4 cut(s) | 56, 65, 772, 885 |
| ErhI | CCWWGG | 4 cut(s) | 56, 65, 772, 885 |
| Esp3I | CGTCTC | 1 cut(s) | 18 |
| FaeI | CATG | 2 cut(s) | 407, 521 |
| FaqI | GGGAC | 2 cut(s) | 84, 623 |
| FatI | CATG | 2 cut(s) | 403, 517 |
| Fnu4HI | GCNGC | 2 cut(s) | 375, 866 |
| FokI | GGATG | 3 cut(s) | 62, 194, 488 |
| Fsp4HI | GCNGC | 2 cut(s) | 375, 866 |
| FspBI | CTAG | 4 cut(s) | 324, 597, 635, 645 |
| GluI | GCNGC | 2 cut(s) | 375, 866 |
| HaeIII | GGCC | 3 cut(s) | 70, 563, 884 |
| HapII | CCGG | 1 cut(s) | 230 |
| Hin1II | CATG | 2 cut(s) | 407, 521 |
| HindIII | AAGCTT | 1 cut(s) | 362 |
| HinfI | GANTC | 1 cut(s) | 352 |
| HpaII | CCGG | 1 cut(s) | 230 |
| HphI | GGTGA | 1 cut(s) | 760 |
| Hpy166II | GTNNAC | 1 cut(s) | 270 |
| Hpy188I | TCNGA | 5 cut(s) | 42, 129, 166, 351, 856 |
| Hpy188III | TCNNGA | 1 cut(s) | 230 |
| Hpy8I | GTNNAC | 1 cut(s) | 270 |
| Hpy99I | CGWCG | 1 cut(s) | 786 |
| HpyAV | CCTTC | 1 cut(s) | 385 |
| HpyCH4III | ACNGT | 4 cut(s) | 29, 728, 748, 826 |
| HpyCH4IV | ACGT | 1 cut(s) | 781 |
| HpyCH4V | TGCA | 5 cut(s) | 284, 296, 685, 731, 865 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 185, 613 |
| HpyF3I | CTNAG | 3 cut(s) | 8, 212, 449 |
| HpySE526I | ACGT | 1 cut(s) | 781 |
| Hsp92II | CATG | 2 cut(s) | 407, 521 |
| Kpn2I | TCCGGA | 1 cut(s) | 229 |
| Kzo9I | GATC | 3 cut(s) | 52, 60, 124 |
| LguI | GCTCTTC | 1 cut(s) | 337 |
| LmnI | GCTCC | 2 cut(s) | 206, 382 |
| Lsp1109I | GCAGC | 2 cut(s) | 386, 877 |
| LweI | GCATC | 1 cut(s) | 802 |
| MaeI | CTAG | 4 cut(s) | 324, 597, 635, 645 |
| MaeII | ACGT | 1 cut(s) | 781 |
| MalI | GATC | 3 cut(s) | 54, 62, 126 |
| MboI | GATC | 3 cut(s) | 52, 60, 124 |
| MboII | GAAGA | 2 cut(s) | 324, 471 |
| MflI | RGATCY | 1 cut(s) | 60 |
| MhlI | GDGCHC | 1 cut(s) | 321 |
| MluCI | AATT | 5 cut(s) | 73, 169, 195, 291, 340 |
| MlyI | GAGTC | 1 cut(s) | 361 |
| MmeI | TCCRAC | 1 cut(s) | 692 |
| MnlI | CCTC | 5 cut(s) | 112, 346, 466, 782, 874 |
| MroI | TCCGGA | 1 cut(s) | 229 |
| MroXI | GAANNNNTTC | 1 cut(s) | 171 |
| MseI | TTAA | 1 cut(s) | 396 |
| MslI | CAYNNNNRTG | 1 cut(s) | 827 |
| MspI | CCGG | 1 cut(s) | 230 |
| MspR9I | CCNGG | 1 cut(s) | 387 |
| MvaI | CCWGG | 1 cut(s) | 387 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 185, 613 |
| NdeII | GATC | 3 cut(s) | 52, 60, 124 |
| NlaIII | CATG | 2 cut(s) | 407, 521 |
| NlaIV | GGNNCC | 4 cut(s) | 62, 100, 564, 763 |
| NspI | RCATGY | 1 cut(s) | 407 |
| OliI | CACNNNNGTG | 1 cut(s) | 827 |
| PaqCI | CACCTGC | 1 cut(s) | 824 |
| PasI | CCCWGGG | 1 cut(s) | 386 |
| PceI | AGGCCT | 1 cut(s) | 884 |
| PciI | ACATGT | 1 cut(s) | 403 |
| PciSI | GCTCTTC | 1 cut(s) | 337 |
| PdmI | GAANNNNTTC | 1 cut(s) | 171 |
| PkrI | GCNGC | 2 cut(s) | 376, 867 |
| PleI | GAGTC | 1 cut(s) | 360 |
| PpsI | GAGTC | 1 cut(s) | 360 |
| PscI | ACATGT | 1 cut(s) | 403 |
| Psp6I | CCWGG | 1 cut(s) | 385 |
| PspGI | CCWGG | 1 cut(s) | 385 |
| PspN4I | GGNNCC | 4 cut(s) | 62, 100, 564, 763 |
| PspPI | GGNCC | 2 cut(s) | 98, 562 |
| PsuI | RGATCY | 1 cut(s) | 60 |
| RsaI | GTAC | 2 cut(s) | 31, 402 |
| RsaNI | GTAC | 2 cut(s) | 30, 401 |
| RseI | CAYNNNNRTG | 1 cut(s) | 827 |
| SapI | GCTCTTC | 1 cut(s) | 337 |
| SaqAI | TTAA | 1 cut(s) | 396 |
| SatI | GCNGC | 2 cut(s) | 375, 866 |
| Sau3AI | GATC | 3 cut(s) | 52, 60, 124 |
| Sau96I | GGNCC | 2 cut(s) | 98, 562 |
| SchI | GAGTC | 1 cut(s) | 361 |
| ScrFI | CCNGG | 1 cut(s) | 387 |
| SduI | GDGCHC | 1 cut(s) | 321 |
| SfaNI | GCATC | 1 cut(s) | 802 |
| SinI | GGWCC | 1 cut(s) | 98 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 827 |
| SpeI | ACTAGT | 1 cut(s) | 323 |
| Sse9I | AATT | 5 cut(s) | 73, 169, 195, 291, 340 |
| SseBI | AGGCCT | 1 cut(s) | 884 |
| SsiI | CCGC | 2 cut(s) | 179, 209 |
| SspMI | CTAG | 4 cut(s) | 324, 597, 635, 645 |
| StuI | AGGCCT | 1 cut(s) | 884 |
| StyD4I | CCNGG | 1 cut(s) | 385 |
| StyI | CCWWGG | 4 cut(s) | 56, 65, 772, 885 |
| TaaI | ACNGT | 4 cut(s) | 29, 728, 748, 826 |
| TaiI | ACGT | 1 cut(s) | 784 |
| TaqI | TCGA | 1 cut(s) | 756 |
| TasI | AATT | 5 cut(s) | 73, 169, 195, 291, 340 |
| Tru1I | TTAA | 1 cut(s) | 396 |
| Tru9I | TTAA | 1 cut(s) | 396 |
| TscAI | CASTG | 1 cut(s) | 854 |
| TseI | GCWGC | 2 cut(s) | 374, 865 |
| TspDTI | ATGAA | 2 cut(s) | 198, 272 |
| TspGWI | ACGGA | 1 cut(s) | 512 |
| TspRI | CASTG | 1 cut(s) | 854 |
| VpaK11BI | GGWCC | 1 cut(s) | 98 |
| XapI | RAATTY | 2 cut(s) | 73, 169 |
| XceI | RCATGY | 1 cut(s) | 407 |
| XmnI | GAANNNNTTC | 1 cut(s) | 171 |
| XspI | CTAG | 4 cut(s) | 324, 597, 635, 645 |