zinc-binding in reverse transcriptase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| SET | PF00856 | 65 - 304 | 5.1e-12 | SET domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 804 |
| AarI | CACCTGC | 1 cut(s) | 520 |
| Acc36I | ACCTGC | 2 cut(s) | 520, 547 |
| AccI | GTMKAC | 2 cut(s) | 148, 373 |
| AccII | CGCG | 3 cut(s) | 25, 58, 209 |
| AccIII | TCCGGA | 2 cut(s) | 553, 900 |
| AciI | CCGC | 7 cut(s) | 102, 108, 123, 158, 246, 279, 478 |
| AclWI | GGATC | 3 cut(s) | 160, 812, 936 |
| AcuI | CTGAAG | 1 cut(s) | 780 |
| AcyI | GRCGYC | 2 cut(s) | 201, 330 |
| AfaI | GTAC | 3 cut(s) | 584, 659, 669 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 289 |
| AgeI | ACCGGT | 1 cut(s) | 227 |
| AgsI | TTSAA | 2 cut(s) | 457, 865 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 753, 785 |
| AluBI | AGCT | 8 cut(s) | 235, 316, 383, 425, 506, 546, 764, 898 |
| AluI | AGCT | 8 cut(s) | 235, 316, 383, 425, 506, 546, 764, 898 |
| Alw21I | GWGCWC | 2 cut(s) | 237, 900 |
| Alw26I | GTCTC | 2 cut(s) | 218, 267 |
| AlwI | GGATC | 3 cut(s) | 160, 812, 936 |
| Aor13HI | TCCGGA | 2 cut(s) | 553, 900 |
| AoxI | GGCC | 1 cut(s) | 867 |
| ApeKI | GCWGC | 2 cut(s) | 743, 764 |
| AseI | ATTAAT | 1 cut(s) | 687 |
| AsiGI | ACCGGT | 1 cut(s) | 227 |
| AspLEI | GCGC | 3 cut(s) | 25, 60, 178 |
| AspS9I | GGNCC | 2 cut(s) | 155, 868 |
| AsuC2I | CCSGG | 6 cut(s) | 144, 153, 193, 214, 676, 988 |
| AsuHPI | GGTGA | 3 cut(s) | 172, 242, 257 |
| AvaII | GGWCC | 1 cut(s) | 155 |
| BanII | GRGCYC | 2 cut(s) | 237, 900 |
| BbsI | GAAGAC | 1 cut(s) | 196 |
| Bbv12I | GWGCWC | 2 cut(s) | 237, 900 |
| BbvI | GCAGC | 2 cut(s) | 751, 755 |
| BccI | CCATC | 2 cut(s) | 565, 802 |
| BceAI | ACGGC | 3 cut(s) | 30, 73, 601 |
| BciVI | GTATCC | 1 cut(s) | 710 |
| BcnI | CCSGG | 6 cut(s) | 144, 153, 193, 214, 676, 988 |
| BcoDI | GTCTC | 2 cut(s) | 218, 267 |
| BfmI | CTRYAG | 1 cut(s) | 750 |
| BfuAI | ACCTGC | 2 cut(s) | 520, 547 |
| BfuI | GTATCC | 1 cut(s) | 710 |
| BisI | GCNGC | 2 cut(s) | 744, 765 |
| BlsI | GCNGC | 2 cut(s) | 745, 766 |
| Bme1390I | CCNGG | 6 cut(s) | 144, 153, 193, 214, 676, 988 |
| Bme18I | GGWCC | 1 cut(s) | 155 |
| BmgT120I | GGNCC | 2 cut(s) | 155, 868 |
| BmrFI | CCNGG | 6 cut(s) | 144, 153, 193, 214, 676, 988 |
| BmsI | GCATC | 3 cut(s) | 844, 907, 925 |
| BpiI | GAAGAC | 1 cut(s) | 196 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 162, 194 |
| Bpu10I | CCTNAGC | 2 cut(s) | 384, 593 |
| BpuMI | CCSGG | 6 cut(s) | 144, 153, 193, 214, 676, 988 |
| BsaBI | GATNNNNATC | 1 cut(s) | 816 |
| BsaHI | GRCGYC | 2 cut(s) | 201, 330 |
| BsaI | GGTCTC | 1 cut(s) | 218 |
| BsaJI | CCNNGG | 2 cut(s) | 343, 986 |
| BsaWI | WCCGGW | 4 cut(s) | 127, 227, 553, 900 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 289 |
| Bse118I | RCCGGY | 2 cut(s) | 227, 441 |
| Bse8I | GATNNNNATC | 1 cut(s) | 816 |
| BseAI | TCCGGA | 2 cut(s) | 553, 900 |
| BseDI | CCNNGG | 2 cut(s) | 343, 986 |
| BseGI | GGATG | 4 cut(s) | 188, 631, 794, 889 |
| BseJI | GATNNNNATC | 1 cut(s) | 816 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 289 |
| BseMII | CTCAG | 1 cut(s) | 558 |
| BseRI | GAGGAG | 1 cut(s) | 380 |
| BseXI | GCAGC | 2 cut(s) | 751, 755 |
| BseYI | CCCAGC | 1 cut(s) | 710 |
| Bsh1236I | CGCG | 3 cut(s) | 25, 58, 209 |
| BshFI | GGCC | 1 cut(s) | 869 |
| BshTI | ACCGGT | 1 cut(s) | 227 |
| BsiHKAI | GWGCWC | 2 cut(s) | 237, 900 |
| BslFI | GGGAC | 1 cut(s) | 969 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 289 |
| BsmAI | GTCTC | 2 cut(s) | 218, 267 |
| BsmFI | GGGAC | 1 cut(s) | 969 |
| BsmI | GAATGC | 1 cut(s) | 604 |
| BsnI | GGCC | 1 cut(s) | 869 |
| Bso31I | GGTCTC | 1 cut(s) | 218 |
| Bsp1286I | GDGCHC | 2 cut(s) | 237, 900 |
| Bsp13I | TCCGGA | 2 cut(s) | 553, 900 |
| Bsp143I | GATC | 4 cut(s) | 165, 724, 817, 928 |
| Bsp68I | TCGCGA | 1 cut(s) | 209 |
| BspACI | CCGC | 7 cut(s) | 102, 108, 123, 158, 246, 279, 478 |
| BspANI | GGCC | 1 cut(s) | 869 |
| BspCNI | CTCAG | 1 cut(s) | 559 |
| BspEI | TCCGGA | 2 cut(s) | 553, 900 |
| BspFNI | CGCG | 3 cut(s) | 25, 58, 209 |
| BspHI | TCATGA | 2 cut(s) | 808, 931 |
| BspMI | ACCTGC | 2 cut(s) | 520, 547 |
| BspPI | GGATC | 3 cut(s) | 160, 812, 936 |
| BspQI | GCTCTTC | 1 cut(s) | 888 |
| BspTNI | GGTCTC | 1 cut(s) | 218 |
| BsrFI | RCCGGY | 2 cut(s) | 227, 441 |
| BssAI | RCCGGY | 2 cut(s) | 227, 441 |
| BssECI | CCNNGG | 2 cut(s) | 343, 986 |
| BssMI | GATC | 4 cut(s) | 165, 724, 817, 928 |
| BssNI | GRCGYC | 2 cut(s) | 201, 330 |
| BssT1I | CCWWGG | 1 cut(s) | 343 |
| Bst6I | CTCTTC | 3 cut(s) | 103, 570, 888 |
| BstACI | GRCGYC | 2 cut(s) | 201, 330 |
| BstC8I | GCNNGC | 3 cut(s) | 27, 544, 590 |
| BstDEI | CTNAG | 3 cut(s) | 384, 567, 593 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 287 |
| BstF5I | GGATG | 4 cut(s) | 188, 631, 794, 889 |
| BstFNI | CGCG | 3 cut(s) | 25, 58, 209 |
| BstHHI | GCGC | 3 cut(s) | 25, 60, 178 |
| BstKTI | GATC | 4 cut(s) | 168, 727, 820, 931 |
| BstMAI | GTCTC | 2 cut(s) | 218, 267 |
| BstMBI | GATC | 4 cut(s) | 165, 724, 817, 928 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 303, 512 |
| BstSCI | CCNGG | 6 cut(s) | 142, 151, 191, 212, 674, 986 |
| BstSFI | CTRYAG | 1 cut(s) | 750 |
| BstUI | CGCG | 3 cut(s) | 25, 58, 209 |
| BstV1I | GCAGC | 2 cut(s) | 751, 755 |
| BstV2I | GAAGAC | 1 cut(s) | 196 |
| BsuI | GTATCC | 1 cut(s) | 710 |
| BsuRI | GGCC | 1 cut(s) | 869 |
| BtsCI | GGATG | 4 cut(s) | 188, 631, 794, 889 |
| BtsI | GCAGTG | 1 cut(s) | 367 |
| BtsIMutI | CAGTG | 1 cut(s) | 367 |
| BtuMI | TCGCGA | 1 cut(s) | 209 |
| BveI | ACCTGC | 2 cut(s) | 520, 547 |
| Cac8I | GCNNGC | 3 cut(s) | 27, 544, 590 |
| CciI | TCATGA | 2 cut(s) | 808, 931 |
| CfoI | GCGC | 3 cut(s) | 25, 60, 178 |
| Cfr10I | RCCGGY | 2 cut(s) | 227, 441 |
| Cfr13I | GGNCC | 2 cut(s) | 155, 868 |
| CpoI | CGGWCCG | 1 cut(s) | 155 |
| CseI | GACGC | 2 cut(s) | 190, 338 |
| Csp6I | GTAC | 3 cut(s) | 583, 658, 668 |
| CspAI | ACCGGT | 1 cut(s) | 227 |
| CspI | CGGWCCG | 1 cut(s) | 155 |
| CviAII | CATG | 4 cut(s) | 19, 395, 809, 932 |
| CviQI | GTAC | 3 cut(s) | 583, 658, 668 |
| DdeI | CTNAG | 3 cut(s) | 384, 567, 593 |
| DpnI | GATC | 4 cut(s) | 167, 726, 819, 930 |
| DpnII | GATC | 4 cut(s) | 165, 724, 817, 928 |
| Eam1104I | CTCTTC | 3 cut(s) | 103, 570, 888 |
| EarI | CTCTTC | 3 cut(s) | 103, 570, 888 |
| EciI | GGCGGA | 1 cut(s) | 268 |
| Ecl136II | GAGCTC | 2 cut(s) | 235, 898 |
| Eco130I | CCWWGG | 1 cut(s) | 343 |
| Eco24I | GRGCYC | 2 cut(s) | 237, 900 |
| Eco31I | GGTCTC | 1 cut(s) | 218 |
| Eco47I | GGWCC | 1 cut(s) | 155 |
| Eco53kI | GAGCTC | 2 cut(s) | 235, 898 |
| Eco57I | CTGAAG | 1 cut(s) | 780 |
| EcoICRI | GAGCTC | 2 cut(s) | 235, 898 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 287 |
| EcoO109I | RGGNCCY | 1 cut(s) | 868 |
| EcoT14I | CCWWGG | 1 cut(s) | 343 |
| EcoT22I | ATGCAT | 1 cut(s) | 694 |
| EcoT38I | GRGCYC | 2 cut(s) | 237, 900 |
| ErhI | CCWWGG | 1 cut(s) | 343 |
| FaeI | CATG | 4 cut(s) | 22, 398, 812, 935 |
| FaqI | GGGAC | 1 cut(s) | 969 |
| FatI | CATG | 4 cut(s) | 18, 394, 808, 931 |
| FblI | GTMKAC | 2 cut(s) | 148, 373 |
| Fnu4HI | GCNGC | 2 cut(s) | 744, 765 |
| FokI | GGATG | 4 cut(s) | 175, 638, 781, 896 |
| FriOI | GRGCYC | 2 cut(s) | 237, 900 |
| Fsp4HI | GCNGC | 2 cut(s) | 744, 765 |
| GlaI | GCGC | 3 cut(s) | 24, 59, 177 |
| GluI | GCNGC | 2 cut(s) | 744, 765 |
| GsaI | CCCAGC | 1 cut(s) | 714 |
| HaeIII | GGCC | 1 cut(s) | 869 |
| HgaI | GACGC | 2 cut(s) | 190, 338 |
| HhaI | GCGC | 3 cut(s) | 25, 60, 178 |
| Hin1I | GRCGYC | 2 cut(s) | 201, 330 |
| Hin1II | CATG | 4 cut(s) | 22, 398, 812, 935 |
| Hin6I | GCGC | 3 cut(s) | 23, 58, 176 |
| HinP1I | GCGC | 3 cut(s) | 23, 58, 176 |
| HincII | GTYRAC | 2 cut(s) | 149, 374 |
| HindII | GTYRAC | 2 cut(s) | 149, 374 |
| HinfI | GANTC | 6 cut(s) | 11, 139, 185, 390, 679, 755 |
| HphI | GGTGA | 3 cut(s) | 172, 242, 257 |
| Hpy166II | GTNNAC | 2 cut(s) | 149, 374 |
| Hpy188I | TCNGA | 5 cut(s) | 165, 170, 311, 568, 760 |
| Hpy188III | TCNNGA | 9 cut(s) | 208, 223, 501, 524, 554, 809, 875, 901, 932 |
| Hpy8I | GTNNAC | 2 cut(s) | 149, 374 |
| Hpy99I | CGWCG | 1 cut(s) | 332 |
| HpyAV | CCTTC | 6 cut(s) | 124, 279, 530, 859, 881, 881 |
| HpyCH4V | TGCA | 5 cut(s) | 360, 692, 851, 920, 978 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 303, 512 |
| HpyF3I | CTNAG | 3 cut(s) | 384, 567, 593 |
| Hsp92I | GRCGYC | 2 cut(s) | 201, 330 |
| Hsp92II | CATG | 4 cut(s) | 22, 398, 812, 935 |
| HspAI | GCGC | 3 cut(s) | 23, 58, 176 |
| Kpn2I | TCCGGA | 2 cut(s) | 553, 900 |
| Kzo9I | GATC | 4 cut(s) | 165, 724, 817, 928 |
| LguI | GCTCTTC | 1 cut(s) | 888 |
| LmnI | GCTCC | 2 cut(s) | 503, 903 |
| Lsp1109I | GCAGC | 2 cut(s) | 751, 755 |
| LweI | GCATC | 3 cut(s) | 844, 907, 925 |
| MaeIII | GTNAC | 1 cut(s) | 954 |
| MalI | GATC | 4 cut(s) | 167, 726, 819, 930 |
| MboI | GATC | 4 cut(s) | 165, 724, 817, 928 |
| MboII | GAAGA | 4 cut(s) | 90, 196, 587, 905 |
| MfeI | CAATTG | 1 cut(s) | 979 |
| MhlI | GDGCHC | 2 cut(s) | 237, 900 |
| MluCI | AATT | 1 cut(s) | 979 |
| MlyI | GAGTC | 2 cut(s) | 20, 194 |
| MmeI | TCCRAC | 1 cut(s) | 559 |
| MnlI | CCTC | 8 cut(s) | 171, 191, 293, 317, 343, 358, 571, 757 |
| Mph1103I | ATGCAT | 1 cut(s) | 694 |
| MroI | TCCGGA | 2 cut(s) | 553, 900 |
| MseI | TTAA | 3 cut(s) | 65, 687, 1006 |
| MslI | CAYNNNNRTG | 1 cut(s) | 813 |
| MspR9I | CCNGG | 6 cut(s) | 144, 153, 193, 214, 676, 988 |
| MunI | CAATTG | 1 cut(s) | 979 |
| Mva1269I | GAATGC | 1 cut(s) | 604 |
| MvnI | CGCG | 3 cut(s) | 25, 58, 209 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 303, 512 |
| NciI | CCSGG | 6 cut(s) | 144, 153, 193, 214, 676, 988 |
| NdeII | GATC | 4 cut(s) | 165, 724, 817, 928 |
| NlaIII | CATG | 4 cut(s) | 22, 398, 812, 935 |
| NmeAIII | GCCGAG | 1 cut(s) | 919 |
| NmuCI | GTSAC | 1 cut(s) | 954 |
| NruI | TCGCGA | 1 cut(s) | 209 |
| NsiI | ATGCAT | 1 cut(s) | 694 |
| PagI | TCATGA | 2 cut(s) | 808, 931 |
| PaqCI | CACCTGC | 1 cut(s) | 520 |
| PciSI | GCTCTTC | 1 cut(s) | 888 |
| PctI | GAATGC | 1 cut(s) | 604 |
| PfeI | GAWTC | 4 cut(s) | 139, 390, 679, 755 |
| PinAI | ACCGGT | 1 cut(s) | 227 |
| PkrI | GCNGC | 2 cut(s) | 745, 766 |
| PleI | GAGTC | 2 cut(s) | 19, 193 |
| PpsI | GAGTC | 2 cut(s) | 19, 193 |
| PshBI | ATTAAT | 1 cut(s) | 687 |
| PsiI | TTATAA | 1 cut(s) | 804 |
| Psp124BI | GAGCTC | 2 cut(s) | 237, 900 |
| PspFI | CCCAGC | 1 cut(s) | 710 |
| PspPI | GGNCC | 2 cut(s) | 155, 868 |
| RruI | TCGCGA | 1 cut(s) | 209 |
| RsaI | GTAC | 3 cut(s) | 584, 659, 669 |
| RsaNI | GTAC | 3 cut(s) | 583, 658, 668 |
| RseI | CAYNNNNRTG | 1 cut(s) | 813 |
| Rsr2I | CGGWCCG | 1 cut(s) | 155 |
| RsrII | CGGWCCG | 1 cut(s) | 155 |
| SacI | GAGCTC | 2 cut(s) | 237, 900 |
| SalI | GTCGAC | 2 cut(s) | 147, 372 |
| SapI | GCTCTTC | 1 cut(s) | 888 |
| SaqAI | TTAA | 3 cut(s) | 65, 687, 1006 |
| SatI | GCNGC | 2 cut(s) | 744, 765 |
| Sau3AI | GATC | 4 cut(s) | 165, 724, 817, 928 |
| Sau96I | GGNCC | 2 cut(s) | 155, 868 |
| SchI | GAGTC | 2 cut(s) | 20, 194 |
| ScrFI | CCNGG | 6 cut(s) | 144, 153, 193, 214, 676, 988 |
| SduI | GDGCHC | 2 cut(s) | 237, 900 |
| SfaNI | GCATC | 3 cut(s) | 844, 907, 925 |
| SfcI | CTRYAG | 1 cut(s) | 750 |
| SinI | GGWCC | 1 cut(s) | 155 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 813 |
| Sse9I | AATT | 1 cut(s) | 979 |
| SsiI | CCGC | 7 cut(s) | 102, 108, 123, 158, 246, 279, 478 |
| SstI | GAGCTC | 2 cut(s) | 237, 900 |
| StyD4I | CCNGG | 6 cut(s) | 142, 151, 191, 212, 674, 986 |
| StyI | CCWWGG | 1 cut(s) | 343 |
| TaqI | TCGA | 4 cut(s) | 71, 148, 222, 373 |
| TasI | AATT | 1 cut(s) | 979 |
| TfiI | GAWTC | 4 cut(s) | 139, 390, 679, 755 |
| Tru1I | TTAA | 3 cut(s) | 65, 687, 1006 |
| Tru9I | TTAA | 3 cut(s) | 65, 687, 1006 |
| TscAI | CASTG | 1 cut(s) | 367 |
| TseFI | GTSAC | 1 cut(s) | 954 |
| TseI | GCWGC | 2 cut(s) | 743, 764 |
| Tsp45I | GTSAC | 1 cut(s) | 954 |
| TspDTI | ATGAA | 2 cut(s) | 642, 900 |
| TspGWI | ACGGA | 2 cut(s) | 26, 638 |
| TspRI | CASTG | 1 cut(s) | 367 |
| VpaK11BI | GGWCC | 1 cut(s) | 155 |
| VspI | ATTAAT | 1 cut(s) | 687 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 287 |
| XmiI | GTMKAC | 2 cut(s) | 148, 373 |
| Zsp2I | ATGCAT | 1 cut(s) | 694 |