Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF3082 | PF11282 | 161 - 239 | 1e-27 | Protein of unknown function (DUF3082) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 638 |
| AatII | GACGTC | 1 cut(s) | 364 |
| AccB1I | GGYRCC | 1 cut(s) | 206 |
| AciI | CCGC | 2 cut(s) | 195, 577 |
| AclWI | GGATC | 1 cut(s) | 840 |
| AcoI | YGGCCR | 1 cut(s) | 706 |
| AcsI | RAATTY | 1 cut(s) | 389 |
| AcuI | CTGAAG | 1 cut(s) | 441 |
| AcyI | GRCGYC | 1 cut(s) | 361 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 197 |
| AgsI | TTSAA | 4 cut(s) | 421, 445, 470, 786 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 51, 83 |
| AluBI | AGCT | 3 cut(s) | 385, 441, 712 |
| AluI | AGCT | 3 cut(s) | 385, 441, 712 |
| AlwI | GGATC | 1 cut(s) | 840 |
| AoxI | GGCC | 1 cut(s) | 706 |
| ApoI | RAATTY | 1 cut(s) | 389 |
| AspLEI | GCGC | 1 cut(s) | 145 |
| AspS9I | GGNCC | 4 cut(s) | 163, 233, 462, 630 |
| AsuHPI | GGTGA | 3 cut(s) | 87, 477, 768 |
| AvaII | GGWCC | 4 cut(s) | 163, 233, 462, 630 |
| BalI | TGGCCA | 1 cut(s) | 708 |
| BanI | GGYRCC | 1 cut(s) | 206 |
| BccI | CCATC | 4 cut(s) | 47, 128, 338, 445 |
| Bme18I | GGWCC | 4 cut(s) | 163, 233, 462, 630 |
| BmgT120I | GGNCC | 4 cut(s) | 163, 233, 462, 630 |
| BmiI | GGNNCC | 6 cut(s) | 202, 208, 234, 235, 328, 463 |
| BmsI | GCATC | 2 cut(s) | 575, 684 |
| BpmI | CTGGAG | 2 cut(s) | 246, 345 |
| BsaHI | GRCGYC | 1 cut(s) | 361 |
| BsaWI | WCCGGW | 1 cut(s) | 160 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 6, 36, 116, 146 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 197 |
| Bse118I | RCCGGY | 1 cut(s) | 203 |
| Bse1I | ACTGG | 5 cut(s) | 263, 276, 309, 328, 766 |
| Bse3DI | GCAATG | 1 cut(s) | 525 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 197 |
| BseMI | GCAATG | 1 cut(s) | 525 |
| BseMII | CTCAG | 2 cut(s) | 153, 738 |
| BseNI | ACTGG | 5 cut(s) | 263, 276, 309, 328, 766 |
| BseRI | GAGGAG | 6 cut(s) | 11, 42, 79, 82, 308, 440 |
| Bsh1285I | CGRYCG | 1 cut(s) | 792 |
| BshFI | GGCC | 1 cut(s) | 708 |
| BshNI | GGYRCC | 1 cut(s) | 206 |
| BsiEI | CGRYCG | 1 cut(s) | 792 |
| BsiSI | CCGG | 4 cut(s) | 161, 198, 204, 519 |
| BslFI | GGGAC | 2 cut(s) | 219, 783 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 197 |
| BsmFI | GGGAC | 2 cut(s) | 219, 783 |
| BsnI | GGCC | 1 cut(s) | 708 |
| Bsp143I | GATC | 1 cut(s) | 832 |
| BspACI | CCGC | 2 cut(s) | 195, 577 |
| BspANI | GGCC | 1 cut(s) | 708 |
| BspCNI | CTCAG | 2 cut(s) | 152, 739 |
| BspLI | GGNNCC | 6 cut(s) | 202, 208, 234, 235, 328, 463 |
| BspPI | GGATC | 1 cut(s) | 840 |
| BspT107I | GGYRCC | 1 cut(s) | 206 |
| BsrDI | GCAATG | 1 cut(s) | 525 |
| BsrFI | RCCGGY | 1 cut(s) | 203 |
| BsrI | ACTGG | 5 cut(s) | 263, 276, 309, 328, 766 |
| BssAI | RCCGGY | 1 cut(s) | 203 |
| BssMI | GATC | 1 cut(s) | 832 |
| BssNI | GRCGYC | 1 cut(s) | 361 |
| Bst4CI | ACNGT | 4 cut(s) | 337, 790, 809, 821 |
| Bst6I | CTCTTC | 1 cut(s) | 222 |
| BstACI | GRCGYC | 1 cut(s) | 361 |
| BstC8I | GCNNGC | 5 cut(s) | 174, 353, 375, 706, 710 |
| BstDEI | CTNAG | 2 cut(s) | 139, 747 |
| BstHHI | GCGC | 1 cut(s) | 145 |
| BstKTI | GATC | 1 cut(s) | 835 |
| BstMBI | GATC | 1 cut(s) | 832 |
| BstMCI | CGRYCG | 1 cut(s) | 792 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 374 |
| BsuRI | GGCC | 1 cut(s) | 708 |
| BtsIMutI | CAGTG | 6 cut(s) | 270, 283, 316, 321, 333, 814 |
| Cac8I | GCNNGC | 5 cut(s) | 174, 353, 375, 706, 710 |
| CfoI | GCGC | 1 cut(s) | 145 |
| Cfr10I | RCCGGY | 1 cut(s) | 203 |
| Cfr13I | GGNCC | 4 cut(s) | 163, 233, 462, 630 |
| DdeI | CTNAG | 2 cut(s) | 139, 747 |
| DpnI | GATC | 1 cut(s) | 834 |
| DpnII | GATC | 1 cut(s) | 832 |
| DraI | TTTAAA | 1 cut(s) | 733 |
| EaeI | YGGCCR | 1 cut(s) | 706 |
| Eam1104I | CTCTTC | 1 cut(s) | 222 |
| EarI | CTCTTC | 1 cut(s) | 222 |
| EciI | GGCGGA | 1 cut(s) | 184 |
| Eco47I | GGWCC | 4 cut(s) | 163, 233, 462, 630 |
| Eco57I | CTGAAG | 1 cut(s) | 441 |
| EcoO109I | RGGNCCY | 1 cut(s) | 233 |
| FaiI | YATR | 3 cut(s) | 213, 638, 702 |
| FaqI | GGGAC | 2 cut(s) | 219, 783 |
| GlaI | GCGC | 1 cut(s) | 144 |
| GsuI | CTGGAG | 2 cut(s) | 246, 345 |
| HaeIII | GGCC | 1 cut(s) | 708 |
| HapII | CCGG | 4 cut(s) | 161, 198, 204, 519 |
| HhaI | GCGC | 1 cut(s) | 145 |
| Hin1I | GRCGYC | 1 cut(s) | 361 |
| Hin6I | GCGC | 1 cut(s) | 143 |
| HinP1I | GCGC | 1 cut(s) | 143 |
| HinfI | GANTC | 7 cut(s) | 217, 251, 257, 470, 522, 751, 796 |
| HpaII | CCGG | 4 cut(s) | 161, 198, 204, 519 |
| HphI | GGTGA | 3 cut(s) | 87, 477, 768 |
| Hpy166II | GTNNAC | 2 cut(s) | 549, 817 |
| Hpy188I | TCNGA | 4 cut(s) | 256, 592, 612, 844 |
| Hpy188III | TCNNGA | 3 cut(s) | 185, 221, 793 |
| Hpy8I | GTNNAC | 2 cut(s) | 549, 817 |
| Hpy99I | CGWCG | 2 cut(s) | 363, 366 |
| HpyAV | CCTTC | 4 cut(s) | 201, 297, 415, 492 |
| HpyCH4III | ACNGT | 4 cut(s) | 337, 790, 809, 821 |
| HpyCH4IV | ACGT | 1 cut(s) | 361 |
| HpyCH4V | TGCA | 4 cut(s) | 7, 377, 530, 659 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 374 |
| HpyF3I | CTNAG | 2 cut(s) | 139, 747 |
| HpySE526I | ACGT | 1 cut(s) | 361 |
| Hsp92I | GRCGYC | 1 cut(s) | 361 |
| HspAI | GCGC | 1 cut(s) | 143 |
| KflI | GGGWCCC | 1 cut(s) | 233 |
| Kzo9I | GATC | 1 cut(s) | 832 |
| LmnI | GCTCC | 2 cut(s) | 326, 404 |
| LweI | GCATC | 2 cut(s) | 575, 684 |
| MaeII | ACGT | 1 cut(s) | 361 |
| MaeIII | GTNAC | 1 cut(s) | 758 |
| MalI | GATC | 1 cut(s) | 834 |
| MboI | GATC | 1 cut(s) | 832 |
| MboII | GAAGA | 2 cut(s) | 239, 421 |
| MfeI | CAATTG | 1 cut(s) | 558 |
| MlsI | TGGCCA | 1 cut(s) | 708 |
| MluCI | AATT | 3 cut(s) | 389, 558, 595 |
| MluNI | TGGCCA | 1 cut(s) | 708 |
| MlyI | GAGTC | 2 cut(s) | 531, 805 |
| Mox20I | TGGCCA | 1 cut(s) | 708 |
| MscI | TGGCCA | 1 cut(s) | 708 |
| MseI | TTAA | 1 cut(s) | 732 |
| Msp20I | TGGCCA | 1 cut(s) | 708 |
| MspI | CCGG | 4 cut(s) | 161, 198, 204, 519 |
| MunI | CAATTG | 1 cut(s) | 558 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 374 |
| NdeII | GATC | 1 cut(s) | 832 |
| NlaIV | GGNNCC | 6 cut(s) | 202, 208, 234, 235, 328, 463 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 355, 370 |
| PfeI | GAWTC | 5 cut(s) | 217, 251, 257, 470, 751 |
| PleI | GAGTC | 2 cut(s) | 530, 804 |
| PpsI | GAGTC | 2 cut(s) | 530, 804 |
| PpuMI | RGGWCCY | 1 cut(s) | 233 |
| PsiI | TTATAA | 1 cut(s) | 638 |
| Psp5II | RGGWCCY | 1 cut(s) | 233 |
| PspN4I | GGNNCC | 6 cut(s) | 202, 208, 234, 235, 328, 463 |
| PspPI | GGNCC | 4 cut(s) | 163, 233, 462, 630 |
| PspPPI | RGGWCCY | 1 cut(s) | 233 |
| SaqAI | TTAA | 1 cut(s) | 732 |
| Sau3AI | GATC | 1 cut(s) | 832 |
| Sau96I | GGNCC | 4 cut(s) | 163, 233, 462, 630 |
| SchI | GAGTC | 2 cut(s) | 531, 805 |
| SfaNI | GCATC | 2 cut(s) | 575, 684 |
| SinI | GGWCC | 4 cut(s) | 163, 233, 462, 630 |
| Sse9I | AATT | 3 cut(s) | 389, 558, 595 |
| SsiI | CCGC | 2 cut(s) | 195, 577 |
| TaaI | ACNGT | 4 cut(s) | 337, 790, 809, 821 |
| TaiI | ACGT | 1 cut(s) | 364 |
| TaqI | TCGA | 1 cut(s) | 792 |
| TasI | AATT | 3 cut(s) | 389, 558, 595 |
| TfiI | GAWTC | 5 cut(s) | 217, 251, 257, 470, 751 |
| Tru1I | TTAA | 1 cut(s) | 732 |
| Tru9I | TTAA | 1 cut(s) | 732 |
| TscAI | CASTG | 6 cut(s) | 270, 283, 316, 328, 340, 814 |
| TspDTI | ATGAA | 1 cut(s) | 706 |
| TspGWI | ACGGA | 1 cut(s) | 14 |
| TspRI | CASTG | 6 cut(s) | 270, 283, 316, 328, 340, 814 |
| VpaK11BI | GGWCC | 4 cut(s) | 163, 233, 462, 630 |
| XapI | RAATTY | 1 cut(s) | 389 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 244 |
| ZraI | GACGTC | 1 cut(s) | 362 |