ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1110 |
| Acc16I | TGCGCA | 2 cut(s) | 468, 1152 |
| Acc36I | ACCTGC | 1 cut(s) | 158 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 24 |
| AccI | GTMKAC | 1 cut(s) | 1182 |
| AccII | CGCG | 2 cut(s) | 208, 345 |
| AciI | CCGC | 6 cut(s) | 7, 299, 345, 439, 504, 1139 |
| AclWI | GGATC | 1 cut(s) | 365 |
| AcoI | YGGCCR | 1 cut(s) | 15 |
| AcsI | RAATTY | 2 cut(s) | 270, 395 |
| AcvI | CACGTG | 1 cut(s) | 1028 |
| AcyI | GRCGYC | 1 cut(s) | 1107 |
| AfaI | GTAC | 3 cut(s) | 227, 594, 955 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 13, 24, 422, 503, 517 |
| AflIII | ACRYGT | 1 cut(s) | 658 |
| AgsI | TTSAA | 3 cut(s) | 137, 217, 727 |
| AjnI | CCWGG | 4 cut(s) | 68, 281, 530, 932 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 418, 450 |
| AluBI | AGCT | 3 cut(s) | 613, 715, 762 |
| AluI | AGCT | 3 cut(s) | 613, 715, 762 |
| Alw21I | GWGCWC | 1 cut(s) | 577 |
| Alw26I | GTCTC | 1 cut(s) | 201 |
| AlwI | GGATC | 1 cut(s) | 365 |
| AoxI | GGCC | 2 cut(s) | 15, 492 |
| ApeKI | GCWGC | 6 cut(s) | 65, 507, 762, 1004, 1031, 1142 |
| ApoI | RAATTY | 2 cut(s) | 270, 395 |
| AspLEI | GCGC | 4 cut(s) | 208, 469, 838, 1153 |
| AspS9I | GGNCC | 1 cut(s) | 493 |
| AsuC2I | CCSGG | 2 cut(s) | 512, 843 |
| AsuHPI | GGTGA | 1 cut(s) | 359 |
| BalI | TGGCCA | 1 cut(s) | 17 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1047, 1079 |
| BbrPI | CACGTG | 1 cut(s) | 1028 |
| BbsI | GAAGAC | 1 cut(s) | 1067 |
| Bbv12I | GWGCWC | 1 cut(s) | 577 |
| BbvI | GCAGC | 6 cut(s) | 52, 494, 749, 991, 1018, 1129 |
| BccI | CCATC | 3 cut(s) | 416, 944, 977 |
| BciT130I | CCWGG | 4 cut(s) | 70, 283, 532, 934 |
| BciVI | GTATCC | 1 cut(s) | 318 |
| BclI | TGATCA | 2 cut(s) | 457, 819 |
| BcnI | CCSGG | 2 cut(s) | 512, 843 |
| BcoDI | GTCTC | 1 cut(s) | 201 |
| BfaI | CTAG | 4 cut(s) | 107, 614, 1014, 1173 |
| BfuAI | ACCTGC | 1 cut(s) | 158 |
| BfuI | GTATCC | 1 cut(s) | 318 |
| BisI | GCNGC | 8 cut(s) | 66, 505, 508, 763, 1005, 1032, 1140, 1143 |
| BlsI | GCNGC | 8 cut(s) | 67, 506, 509, 764, 1006, 1033, 1141, 1144 |
| BmcAI | AGTACT | 1 cut(s) | 227 |
| Bme1390I | CCNGG | 6 cut(s) | 70, 283, 512, 532, 843, 934 |
| BmgT120I | GGNCC | 1 cut(s) | 493 |
| BmiI | GGNNCC | 2 cut(s) | 113, 495 |
| BmrFI | CCNGG | 6 cut(s) | 70, 283, 512, 532, 843, 934 |
| BmrI | ACTGGG | 1 cut(s) | 187 |
| BmsI | GCATC | 4 cut(s) | 249, 454, 823, 919 |
| BmuI | ACTGGG | 1 cut(s) | 187 |
| BpiI | GAAGAC | 1 cut(s) | 1067 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 751, 783 |
| BpmI | CTGGAG | 2 cut(s) | 304, 955 |
| BpuMI | CCSGG | 2 cut(s) | 512, 843 |
| BsaAI | YACGTR | 1 cut(s) | 1028 |
| BsaHI | GRCGYC | 1 cut(s) | 1107 |
| BsaJI | CCNNGG | 8 cut(s) | 39, 69, 374, 417, 531, 677, 702, 841 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 13, 24, 422, 503, 517 |
| Bse1I | ACTGG | 4 cut(s) | 184, 193, 479, 1014 |
| BseBI | CCWGG | 4 cut(s) | 70, 283, 532, 934 |
| BseDI | CCNNGG | 8 cut(s) | 39, 69, 374, 417, 531, 677, 702, 841 |
| BseGI | GGATG | 7 cut(s) | 373, 427, 790, 822, 838, 988, 999 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 13, 24, 422, 503, 517 |
| BseMII | CTCAG | 1 cut(s) | 328 |
| BseNI | ACTGG | 4 cut(s) | 184, 193, 479, 1014 |
| BseXI | GCAGC | 6 cut(s) | 52, 494, 749, 991, 1018, 1129 |
| BsgI | GTGCAG | 1 cut(s) | 990 |
| Bsh1236I | CGCG | 2 cut(s) | 208, 345 |
| BshFI | GGCC | 2 cut(s) | 17, 494 |
| BsiHKAI | GWGCWC | 1 cut(s) | 577 |
| BsiSI | CCGG | 3 cut(s) | 115, 512, 843 |
| BslFI | GGGAC | 3 cut(s) | 174, 354, 387 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 13, 24, 422, 503, 517 |
| BsmAI | GTCTC | 1 cut(s) | 201 |
| BsmFI | GGGAC | 3 cut(s) | 174, 354, 387 |
| BsmI | GAATGC | 1 cut(s) | 291 |
| BsnI | GGCC | 2 cut(s) | 17, 494 |
| Bsp1286I | GDGCHC | 1 cut(s) | 577 |
| Bsp143I | GATC | 3 cut(s) | 370, 457, 819 |
| Bsp19I | CCATGG | 1 cut(s) | 417 |
| BspACI | CCGC | 6 cut(s) | 7, 299, 345, 439, 504, 1139 |
| BspANI | GGCC | 2 cut(s) | 17, 494 |
| BspCNI | CTCAG | 1 cut(s) | 327 |
| BspFNI | CGCG | 2 cut(s) | 208, 345 |
| BspHI | TCATGA | 2 cut(s) | 460, 1090 |
| BspLI | GGNNCC | 2 cut(s) | 113, 495 |
| BspMI | ACCTGC | 1 cut(s) | 158 |
| BspPI | GGATC | 1 cut(s) | 365 |
| BsrI | ACTGG | 4 cut(s) | 184, 193, 479, 1014 |
| BssECI | CCNNGG | 8 cut(s) | 39, 69, 374, 417, 531, 677, 702, 841 |
| BssMI | GATC | 3 cut(s) | 370, 457, 819 |
| BssNI | GRCGYC | 1 cut(s) | 1107 |
| BssT1I | CCWWGG | 4 cut(s) | 39, 374, 417, 677 |
| Bst2UI | CCWGG | 4 cut(s) | 70, 283, 532, 934 |
| Bst4CI | ACNGT | 3 cut(s) | 330, 782, 1020 |
| BstACI | GRCGYC | 1 cut(s) | 1107 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 150 |
| BstBAI | YACGTR | 1 cut(s) | 1028 |
| BstC8I | GCNNGC | 1 cut(s) | 86 |
| BstDEI | CTNAG | 1 cut(s) | 314 |
| BstDSI | CCRYGG | 2 cut(s) | 417, 702 |
| BstF5I | GGATG | 7 cut(s) | 373, 427, 790, 822, 838, 988, 999 |
| BstFNI | CGCG | 2 cut(s) | 208, 345 |
| BstHHI | GCGC | 4 cut(s) | 208, 469, 838, 1153 |
| BstKTI | GATC | 3 cut(s) | 373, 460, 822 |
| BstMAI | GTCTC | 1 cut(s) | 201 |
| BstMBI | GATC | 3 cut(s) | 370, 457, 819 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 150, 164, 385, 1010, 1037, 1067, 1148 |
| BstNI | CCWGG | 4 cut(s) | 70, 283, 532, 934 |
| BstNSI | RCATGY | 2 cut(s) | 88, 662 |
| BstSCI | CCNGG | 6 cut(s) | 68, 281, 510, 530, 841, 932 |
| BstUI | CGCG | 2 cut(s) | 208, 345 |
| BstV1I | GCAGC | 6 cut(s) | 52, 494, 749, 991, 1018, 1129 |
| BstV2I | GAAGAC | 1 cut(s) | 1067 |
| BsuI | GTATCC | 1 cut(s) | 318 |
| BsuRI | GGCC | 2 cut(s) | 17, 494 |
| BtgI | CCRYGG | 2 cut(s) | 417, 702 |
| BtsCI | GGATG | 7 cut(s) | 373, 427, 790, 822, 838, 988, 999 |
| BtsIMutI | CAGTG | 2 cut(s) | 191, 1007 |
| BveI | ACCTGC | 1 cut(s) | 158 |
| Cac8I | GCNNGC | 1 cut(s) | 86 |
| CciI | TCATGA | 2 cut(s) | 460, 1090 |
| CfoI | GCGC | 4 cut(s) | 208, 469, 838, 1153 |
| Cfr13I | GGNCC | 1 cut(s) | 493 |
| CseI | GACGC | 1 cut(s) | 351 |
| Csp6I | GTAC | 3 cut(s) | 226, 593, 954 |
| CviAII | CATG | 9 cut(s) | 85, 247, 385, 418, 461, 578, 659, 1048, 1091 |
| CviQI | GTAC | 3 cut(s) | 226, 593, 954 |
| DdeI | CTNAG | 1 cut(s) | 314 |
| DpnI | GATC | 3 cut(s) | 372, 459, 821 |
| DpnII | GATC | 3 cut(s) | 370, 457, 819 |
| DraI | TTTAAA | 1 cut(s) | 777 |
| EaeI | YGGCCR | 1 cut(s) | 15 |
| Eco130I | CCWWGG | 4 cut(s) | 39, 374, 417, 677 |
| Eco72I | CACGTG | 1 cut(s) | 1028 |
| EcoRII | CCWGG | 4 cut(s) | 68, 281, 530, 932 |
| EcoT14I | CCWWGG | 4 cut(s) | 39, 374, 417, 677 |
| EcoT22I | ATGCAT | 1 cut(s) | 86 |
| ErhI | CCWWGG | 4 cut(s) | 39, 374, 417, 677 |
| FaeI | CATG | 9 cut(s) | 88, 250, 388, 421, 464, 581, 662, 1051, 1094 |
| FaqI | GGGAC | 3 cut(s) | 174, 354, 387 |
| FatI | CATG | 9 cut(s) | 84, 246, 384, 417, 460, 577, 658, 1047, 1090 |
| FauI | CCCGC | 2 cut(s) | 292, 432 |
| FbaI | TGATCA | 2 cut(s) | 457, 819 |
| FblI | GTMKAC | 1 cut(s) | 1182 |
| Fnu4HI | GCNGC | 8 cut(s) | 66, 505, 508, 763, 1005, 1032, 1140, 1143 |
| FokI | GGATG | 7 cut(s) | 380, 434, 777, 829, 845, 995, 1006 |
| Fsp4HI | GCNGC | 8 cut(s) | 66, 505, 508, 763, 1005, 1032, 1140, 1143 |
| FspAI | RTGCGCAY | 1 cut(s) | 468 |
| FspBI | CTAG | 4 cut(s) | 107, 614, 1014, 1173 |
| FspI | TGCGCA | 2 cut(s) | 468, 1152 |
| GlaI | GCGC | 4 cut(s) | 207, 468, 837, 1152 |
| GluI | GCNGC | 8 cut(s) | 66, 505, 508, 763, 1005, 1032, 1140, 1143 |
| GsuI | CTGGAG | 2 cut(s) | 304, 955 |
| HaeIII | GGCC | 2 cut(s) | 17, 494 |
| HapII | CCGG | 3 cut(s) | 115, 512, 843 |
| HgaI | GACGC | 1 cut(s) | 351 |
| HhaI | GCGC | 4 cut(s) | 208, 469, 838, 1153 |
| Hin1I | GRCGYC | 1 cut(s) | 1107 |
| Hin1II | CATG | 9 cut(s) | 88, 250, 388, 421, 464, 581, 662, 1051, 1094 |
| Hin6I | GCGC | 4 cut(s) | 206, 467, 836, 1151 |
| HinP1I | GCGC | 4 cut(s) | 206, 467, 836, 1151 |
| HincII | GTYRAC | 1 cut(s) | 1183 |
| HindII | GTYRAC | 1 cut(s) | 1183 |
| HinfI | GANTC | 5 cut(s) | 35, 55, 177, 920, 1087 |
| HpaII | CCGG | 3 cut(s) | 115, 512, 843 |
| HphI | GGTGA | 1 cut(s) | 359 |
| Hpy166II | GTNNAC | 2 cut(s) | 737, 1183 |
| Hpy188I | TCNGA | 4 cut(s) | 317, 787, 852, 1211 |
| Hpy188III | TCNNGA | 3 cut(s) | 461, 727, 1091 |
| Hpy8I | GTNNAC | 2 cut(s) | 737, 1183 |
| Hpy99I | CGWCG | 2 cut(s) | 259, 1112 |
| HpyAV | CCTTC | 5 cut(s) | 143, 415, 613, 883, 1088 |
| HpyCH4III | ACNGT | 3 cut(s) | 330, 782, 1020 |
| HpyCH4IV | ACGT | 4 cut(s) | 486, 595, 1027, 1107 |
| HpyCH4V | TGCA | 8 cut(s) | 4, 84, 128, 262, 1007, 1040, 1145, 1199 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 150, 164, 385, 1010, 1037, 1067, 1148 |
| HpyF3I | CTNAG | 1 cut(s) | 314 |
| HpySE526I | ACGT | 4 cut(s) | 486, 595, 1027, 1107 |
| Hsp92I | GRCGYC | 1 cut(s) | 1107 |
| Hsp92II | CATG | 9 cut(s) | 88, 250, 388, 421, 464, 581, 662, 1051, 1094 |
| HspAI | GCGC | 4 cut(s) | 206, 467, 836, 1151 |
| Ksp22I | TGATCA | 2 cut(s) | 457, 819 |
| Kzo9I | GATC | 3 cut(s) | 370, 457, 819 |
| LmnI | GCTCC | 2 cut(s) | 251, 843 |
| Lsp1109I | GCAGC | 6 cut(s) | 52, 494, 749, 991, 1018, 1129 |
| LweI | GCATC | 4 cut(s) | 249, 454, 823, 919 |
| MaeI | CTAG | 4 cut(s) | 107, 614, 1014, 1173 |
| MaeII | ACGT | 4 cut(s) | 486, 595, 1027, 1107 |
| MalI | GATC | 3 cut(s) | 372, 459, 821 |
| MboI | GATC | 3 cut(s) | 370, 457, 819 |
| MboII | GAAGA | 9 cut(s) | 64, 443, 516, 519, 574, 1064, 1067, 1067, 1175 |
| MfeI | CAATTG | 1 cut(s) | 1146 |
| MhlI | GDGCHC | 1 cut(s) | 577 |
| MlsI | TGGCCA | 1 cut(s) | 17 |
| MluCI | AATT | 6 cut(s) | 19, 137, 270, 395, 730, 1146 |
| MluNI | TGGCCA | 1 cut(s) | 17 |
| MlyI | GAGTC | 1 cut(s) | 171 |
| Mox20I | TGGCCA | 1 cut(s) | 17 |
| Mph1103I | ATGCAT | 1 cut(s) | 86 |
| MscI | TGGCCA | 1 cut(s) | 17 |
| MseI | TTAA | 3 cut(s) | 11, 357, 776 |
| MslI | CAYNNNNRTG | 2 cut(s) | 123, 1158 |
| Msp20I | TGGCCA | 1 cut(s) | 17 |
| MspI | CCGG | 3 cut(s) | 115, 512, 843 |
| MspR9I | CCNGG | 6 cut(s) | 70, 283, 512, 532, 843, 934 |
| MunI | CAATTG | 1 cut(s) | 1146 |
| Mva1269I | GAATGC | 1 cut(s) | 291 |
| MvaI | CCWGG | 4 cut(s) | 70, 283, 532, 934 |
| MvnI | CGCG | 2 cut(s) | 208, 345 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 150, 164, 385, 1010, 1037, 1067, 1148 |
| NciI | CCSGG | 2 cut(s) | 512, 843 |
| NcoI | CCATGG | 1 cut(s) | 417 |
| NdeII | GATC | 3 cut(s) | 370, 457, 819 |
| NlaIII | CATG | 9 cut(s) | 88, 250, 388, 421, 464, 581, 662, 1051, 1094 |
| NlaIV | GGNNCC | 2 cut(s) | 113, 495 |
| NsbI | TGCGCA | 2 cut(s) | 468, 1152 |
| NsiI | ATGCAT | 1 cut(s) | 86 |
| NspI | RCATGY | 2 cut(s) | 88, 662 |
| PaeI | GCATGC | 1 cut(s) | 88 |
| PagI | TCATGA | 2 cut(s) | 460, 1090 |
| PciI | ACATGT | 1 cut(s) | 658 |
| PctI | GAATGC | 1 cut(s) | 291 |
| PfeI | GAWTC | 4 cut(s) | 35, 55, 920, 1087 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 24 |
| PkrI | GCNGC | 8 cut(s) | 67, 506, 509, 764, 1006, 1033, 1141, 1144 |
| PleI | GAGTC | 1 cut(s) | 171 |
| PmaCI | CACGTG | 1 cut(s) | 1028 |
| PmlI | CACGTG | 1 cut(s) | 1028 |
| PpsI | GAGTC | 1 cut(s) | 171 |
| Ppu21I | YACGTR | 1 cut(s) | 1028 |
| PscI | ACATGT | 1 cut(s) | 658 |
| Psp6I | CCWGG | 4 cut(s) | 68, 281, 530, 932 |
| PspCI | CACGTG | 1 cut(s) | 1028 |
| PspGI | CCWGG | 4 cut(s) | 68, 281, 530, 932 |
| PspN4I | GGNNCC | 2 cut(s) | 113, 495 |
| PspPI | GGNCC | 1 cut(s) | 493 |
| RsaI | GTAC | 3 cut(s) | 227, 594, 955 |
| RsaNI | GTAC | 3 cut(s) | 226, 593, 954 |
| RseI | CAYNNNNRTG | 2 cut(s) | 123, 1158 |
| SalI | GTCGAC | 1 cut(s) | 1181 |
| SaqAI | TTAA | 3 cut(s) | 11, 357, 776 |
| SatI | GCNGC | 8 cut(s) | 66, 505, 508, 763, 1005, 1032, 1140, 1143 |
| Sau3AI | GATC | 3 cut(s) | 370, 457, 819 |
| Sau96I | GGNCC | 1 cut(s) | 493 |
| ScaI | AGTACT | 1 cut(s) | 227 |
| SchI | GAGTC | 1 cut(s) | 171 |
| ScrFI | CCNGG | 6 cut(s) | 70, 283, 512, 532, 843, 934 |
| SduI | GDGCHC | 1 cut(s) | 577 |
| SfaNI | GCATC | 4 cut(s) | 249, 454, 823, 919 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 123, 1158 |
| SphI | GCATGC | 1 cut(s) | 88 |
| Sse9I | AATT | 6 cut(s) | 19, 137, 270, 395, 730, 1146 |
| SsiI | CCGC | 6 cut(s) | 7, 299, 345, 439, 504, 1139 |
| SspI | AATATT | 2 cut(s) | 355, 826 |
| SspMI | CTAG | 4 cut(s) | 107, 614, 1014, 1173 |
| StyD4I | CCNGG | 6 cut(s) | 68, 281, 510, 530, 841, 932 |
| StyI | CCWWGG | 4 cut(s) | 39, 374, 417, 677 |
| TaaI | ACNGT | 3 cut(s) | 330, 782, 1020 |
| TaiI | ACGT | 4 cut(s) | 489, 598, 1030, 1110 |
| TaqI | TCGA | 3 cut(s) | 669, 1110, 1182 |
| TasI | AATT | 6 cut(s) | 19, 137, 270, 395, 730, 1146 |
| TatI | WGTACW | 1 cut(s) | 225 |
| TauI | GCSGC | 2 cut(s) | 507, 1142 |
| TfiI | GAWTC | 4 cut(s) | 35, 55, 920, 1087 |
| Tru1I | TTAA | 3 cut(s) | 11, 357, 776 |
| Tru9I | TTAA | 3 cut(s) | 11, 357, 776 |
| TscAI | CASTG | 2 cut(s) | 191, 1014 |
| TseI | GCWGC | 6 cut(s) | 65, 507, 762, 1004, 1031, 1142 |
| TspDTI | ATGAA | 6 cut(s) | 47, 235, 707, 1079, 1107, 1176 |
| TspGWI | ACGGA | 1 cut(s) | 389 |
| TspRI | CASTG | 2 cut(s) | 191, 1014 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 24 |
| XapI | RAATTY | 2 cut(s) | 270, 395 |
| XceI | RCATGY | 2 cut(s) | 88, 662 |
| XmiI | GTMKAC | 1 cut(s) | 1182 |
| XspI | CTAG | 4 cut(s) | 107, 614, 1014, 1173 |
| ZraI | GACGTC | 1 cut(s) | 1108 |
| ZrmI | AGTACT | 1 cut(s) | 227 |
| Zsp2I | ATGCAT | 1 cut(s) | 86 |