ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 2203, 2494 |
| AatII | GACGTC | 2 cut(s) | 321, 1861 |
| Acc36I | ACCTGC | 2 cut(s) | 2203, 2494 |
| AccB1I | GGYRCC | 1 cut(s) | 59 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 75 |
| AccBSI | CCGCTC | 1 cut(s) | 110 |
| AccI | GTMKAC | 3 cut(s) | 409, 759, 1855 |
| AciI | CCGC | 8 cut(s) | 110, 167, 244, 1227, 1695, 2373, 2536, 2727 |
| AclI | AACGTT | 1 cut(s) | 2615 |
| AclWI | GGATC | 2 cut(s) | 1729, 2026 |
| AcoI | YGGCCR | 2 cut(s) | 66, 1188 |
| AcsI | RAATTY | 1 cut(s) | 1377 |
| AcuI | CTGAAG | 2 cut(s) | 221, 2393 |
| AcyI | GRCGYC | 3 cut(s) | 60, 318, 1858 |
| AdeI | CACNNNGTG | 1 cut(s) | 75 |
| AfaI | GTAC | 5 cut(s) | 189, 462, 527, 1774, 2238 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 75, 172, 831, 1528, 2072, 2233 |
| AflIII | ACRYGT | 1 cut(s) | 636 |
| AgeI | ACCGGT | 1 cut(s) | 1972 |
| AgsI | TTSAA | 9 cut(s) | 250, 281, 515, 895, 1091, 1298, 1815, 2088, 2562 |
| AjnI | CCWGG | 5 cut(s) | 566, 973, 1323, 2052, 2195 |
| Alw21I | GWGCWC | 6 cut(s) | 331, 823, 1340, 1494, 2464, 2485 |
| Alw26I | GTCTC | 2 cut(s) | 80, 2507 |
| Alw44I | GTGCAC | 3 cut(s) | 819, 1336, 2481 |
| AlwI | GGATC | 2 cut(s) | 1729, 2026 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2166 |
| Ama87I | CYCGRG | 2 cut(s) | 831, 2463 |
| AoxI | GGCC | 3 cut(s) | 66, 1188, 2199 |
| ApaLI | GTGCAC | 3 cut(s) | 819, 1336, 2481 |
| ApeKI | GCWGC | 4 cut(s) | 373, 1075, 1356, 2489 |
| ApoI | RAATTY | 1 cut(s) | 1377 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2506, 2538 |
| AsiGI | ACCGGT | 1 cut(s) | 1972 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1538 |
| AspLEI | GCGC | 1 cut(s) | 62 |
| AspS9I | GGNCC | 2 cut(s) | 1321, 2199 |
| AsuC2I | CCSGG | 1 cut(s) | 530 |
| AsuHPI | GGTGA | 4 cut(s) | 307, 497, 596, 848 |
| AsuNHI | GCTAGC | 1 cut(s) | 206 |
| AvaI | CYCGRG | 2 cut(s) | 831, 2463 |
| AvaII | GGWCC | 1 cut(s) | 1321 |
| AxyI | CCTNAGG | 1 cut(s) | 993 |
| BaeGI | GKGCMC | 3 cut(s) | 823, 1340, 2485 |
| BalI | TGGCCA | 2 cut(s) | 68, 1190 |
| BanI | GGYRCC | 1 cut(s) | 59 |
| BanII | GRGCYC | 1 cut(s) | 2464 |
| Bbv12I | GWGCWC | 6 cut(s) | 331, 823, 1340, 1494, 2464, 2485 |
| BbvI | GCAGC | 4 cut(s) | 385, 1062, 1368, 2501 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 96, 130, 2234, 2268 |
| BciT130I | CCWGG | 5 cut(s) | 568, 975, 1325, 2054, 2197 |
| BciVI | GTATCC | 1 cut(s) | 2399 |
| BclI | TGATCA | 1 cut(s) | 1833 |
| BcnI | CCSGG | 1 cut(s) | 530 |
| BcoDI | GTCTC | 2 cut(s) | 80, 2507 |
| BfaI | CTAG | 9 cut(s) | 101, 207, 438, 1430, 1662, 2072, 2081, 2454, 2660 |
| BfmI | CTRYAG | 6 cut(s) | 756, 1076, 1734, 1954, 2274, 2487 |
| BfoI | RGCGCY | 1 cut(s) | 63 |
| BfuAI | ACCTGC | 2 cut(s) | 2203, 2494 |
| BfuI | GTATCC | 1 cut(s) | 2399 |
| BisI | GCNGC | 6 cut(s) | 374, 1076, 1357, 2373, 2490, 2537 |
| BlsI | GCNGC | 6 cut(s) | 375, 1077, 1358, 2374, 2491, 2538 |
| Bme1390I | CCNGG | 6 cut(s) | 530, 568, 975, 1325, 2054, 2197 |
| Bme18I | GGWCC | 1 cut(s) | 1321 |
| BmeT110I | CYCGRG | 2 cut(s) | 831, 2463 |
| BmgT120I | GGNCC | 2 cut(s) | 1321, 2199 |
| BmiI | GGNNCC | 4 cut(s) | 61, 999, 1692, 2357 |
| BmrFI | CCNGG | 6 cut(s) | 530, 568, 975, 1325, 2054, 2197 |
| BmrI | ACTGGG | 2 cut(s) | 779, 1785 |
| BmsI | GCATC | 6 cut(s) | 964, 1161, 1552, 2408, 2509, 2634 |
| BmtI | GCTAGC | 1 cut(s) | 210 |
| BmuI | ACTGGG | 2 cut(s) | 779, 1785 |
| BoxI | GACNNNNGTC | 1 cut(s) | 317 |
| BpmI | CTGGAG | 4 cut(s) | 345, 464, 780, 2062 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1047, 1263 |
| BpuMI | CCSGG | 1 cut(s) | 530 |
| BsaBI | GATNNNNATC | 3 cut(s) | 2036, 2147, 2624 |
| BsaHI | GRCGYC | 3 cut(s) | 60, 318, 1858 |
| BsaJI | CCNNGG | 3 cut(s) | 55, 63, 2196 |
| BsaWI | WCCGGW | 2 cut(s) | 606, 1972 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 180, 210, 524, 554, 2294, 2324, 2405, 2435 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 75, 172, 831, 1528, 2072, 2233 |
| Bse118I | RCCGGY | 1 cut(s) | 1972 |
| Bse1I | ACTGG | 7 cut(s) | 447, 785, 1203, 1734, 1780, 1808, 2505 |
| Bse21I | CCTNAGG | 1 cut(s) | 993 |
| Bse3DI | GCAATG | 1 cut(s) | 1470 |
| Bse8I | GATNNNNATC | 3 cut(s) | 2036, 2147, 2624 |
| BseBI | CCWGG | 5 cut(s) | 568, 975, 1325, 2054, 2197 |
| BseDI | CCNNGG | 3 cut(s) | 55, 63, 2196 |
| BseGI | GGATG | 8 cut(s) | 667, 696, 874, 1033, 1087, 1567, 1660, 2265 |
| BseJI | GATNNNNATC | 3 cut(s) | 2036, 2147, 2624 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 75, 172, 831, 1528, 2072, 2233 |
| BseMI | GCAATG | 1 cut(s) | 1470 |
| BseMII | CTCAG | 4 cut(s) | 606, 984, 1061, 1277 |
| BseNI | ACTGG | 7 cut(s) | 447, 785, 1203, 1734, 1780, 1808, 2505 |
| BseRI | GAGGAG | 4 cut(s) | 548, 990, 1612, 1754 |
| BseSI | GKGCMC | 3 cut(s) | 823, 1340, 2485 |
| BseXI | GCAGC | 4 cut(s) | 385, 1062, 1368, 2501 |
| BsgI | GTGCAG | 4 cut(s) | 100, 500, 2179, 2674 |
| BshFI | GGCC | 3 cut(s) | 68, 1190, 2201 |
| BshNI | GGYRCC | 1 cut(s) | 59 |
| BshTI | ACCGGT | 1 cut(s) | 1972 |
| BsiHKAI | GWGCWC | 6 cut(s) | 331, 823, 1340, 1494, 2464, 2485 |
| BsiHKCI | CYCGRG | 2 cut(s) | 831, 2463 |
| BsiSI | CCGG | 3 cut(s) | 530, 607, 1973 |
| BslFI | GGGAC | 3 cut(s) | 325, 1564, 2177 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 75, 172, 831, 1528, 2072, 2233 |
| BsmAI | GTCTC | 2 cut(s) | 80, 2507 |
| BsmFI | GGGAC | 3 cut(s) | 325, 1564, 2177 |
| BsmI | GAATGC | 1 cut(s) | 287 |
| BsnI | GGCC | 3 cut(s) | 68, 1190, 2201 |
| BsoBI | CYCGRG | 2 cut(s) | 831, 2463 |
| Bsp1286I | GDGCHC | 6 cut(s) | 331, 823, 1340, 1494, 2464, 2485 |
| Bsp143I | GATC | 5 cut(s) | 103, 1038, 1721, 1833, 2031 |
| Bsp19I | CCATGG | 2 cut(s) | 55, 63 |
| BspACI | CCGC | 8 cut(s) | 110, 167, 244, 1227, 1695, 2373, 2536, 2727 |
| BspANI | GGCC | 3 cut(s) | 68, 1190, 2201 |
| BspCNI | CTCAG | 4 cut(s) | 607, 985, 1060, 1276 |
| BspHI | TCATGA | 1 cut(s) | 1573 |
| BspLI | GGNNCC | 4 cut(s) | 61, 999, 1692, 2357 |
| BspMAI | CTGCAG | 2 cut(s) | 1080, 2491 |
| BspMI | ACCTGC | 2 cut(s) | 2203, 2494 |
| BspOI | GCTAGC | 1 cut(s) | 210 |
| BspPI | GGATC | 2 cut(s) | 1729, 2026 |
| BspQI | GCTCTTC | 1 cut(s) | 1096 |
| BspT107I | GGYRCC | 1 cut(s) | 59 |
| BsrBI | CCGCTC | 1 cut(s) | 110 |
| BsrDI | GCAATG | 1 cut(s) | 1470 |
| BsrFI | RCCGGY | 1 cut(s) | 1972 |
| BsrI | ACTGG | 7 cut(s) | 447, 785, 1203, 1734, 1780, 1808, 2505 |
| BssAI | RCCGGY | 1 cut(s) | 1972 |
| BssECI | CCNNGG | 3 cut(s) | 55, 63, 2196 |
| BssMI | GATC | 5 cut(s) | 103, 1038, 1721, 1833, 2031 |
| BssNI | GRCGYC | 3 cut(s) | 60, 318, 1858 |
| BssT1I | CCWWGG | 2 cut(s) | 55, 63 |
| Bst2UI | CCWGG | 5 cut(s) | 568, 975, 1325, 2054, 2197 |
| Bst4CI | ACNGT | 2 cut(s) | 1344, 2168 |
| Bst6I | CTCTTC | 2 cut(s) | 620, 1096 |
| BstACI | GRCGYC | 3 cut(s) | 60, 318, 1858 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1478 |
| BstC8I | GCNNGC | 6 cut(s) | 208, 1204, 1208, 1519, 2007, 2689 |
| BstDEI | CTNAG | 7 cut(s) | 46, 615, 993, 1047, 1263, 2028, 2696 |
| BstDSI | CCRYGG | 2 cut(s) | 55, 63 |
| BstEII | GGTNACC | 1 cut(s) | 562 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1526, 2070 |
| BstF5I | GGATG | 8 cut(s) | 667, 696, 874, 1033, 1087, 1567, 1660, 2265 |
| BstH2I | RGCGCY | 1 cut(s) | 63 |
| BstHHI | GCGC | 1 cut(s) | 62 |
| BstKTI | GATC | 5 cut(s) | 106, 1041, 1724, 1836, 2034 |
| BstMAI | GTCTC | 2 cut(s) | 80, 2507 |
| BstMBI | GATC | 5 cut(s) | 103, 1038, 1721, 1833, 2031 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 212, 235, 1469, 1478, 2119, 2489, 2652, 2750 |
| BstNI | CCWGG | 5 cut(s) | 568, 975, 1325, 2054, 2197 |
| BstNSI | RCATGY | 2 cut(s) | 640, 1481 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 317 |
| BstPI | GGTNACC | 1 cut(s) | 562 |
| BstSCI | CCNGG | 6 cut(s) | 528, 566, 973, 1323, 2052, 2195 |
| BstSFI | CTRYAG | 6 cut(s) | 756, 1076, 1734, 1954, 2274, 2487 |
| BstSLI | GKGCMC | 3 cut(s) | 823, 1340, 2485 |
| BstV1I | GCAGC | 4 cut(s) | 385, 1062, 1368, 2501 |
| BstX2I | RGATCY | 1 cut(s) | 2031 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1198 |
| BstYI | RGATCY | 1 cut(s) | 2031 |
| Bsu36I | CCTNAGG | 1 cut(s) | 993 |
| BsuI | GTATCC | 1 cut(s) | 2399 |
| BsuRI | GGCC | 3 cut(s) | 68, 1190, 2201 |
| BtgI | CCRYGG | 2 cut(s) | 55, 63 |
| BtgZI | GCGATG | 2 cut(s) | 300, 941 |
| BtsCI | GGATG | 8 cut(s) | 667, 696, 874, 1033, 1087, 1567, 1660, 2265 |
| BtsI | GCAGTG | 1 cut(s) | 2367 |
| BtsIMutI | CAGTG | 4 cut(s) | 792, 2275, 2367, 2635 |
| BveI | ACCTGC | 2 cut(s) | 2203, 2494 |
| Cac8I | GCNNGC | 6 cut(s) | 208, 1204, 1208, 1519, 2007, 2689 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2166 |
| CciI | TCATGA | 1 cut(s) | 1573 |
| CfoI | GCGC | 1 cut(s) | 62 |
| Cfr10I | RCCGGY | 1 cut(s) | 1972 |
| Cfr13I | GGNCC | 2 cut(s) | 1321, 2199 |
| CseI | GACGC | 1 cut(s) | 1095 |
| Csp6I | GTAC | 5 cut(s) | 188, 461, 526, 1773, 2237 |
| CspAI | ACCGGT | 1 cut(s) | 1972 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 453, 488 |
| CviQI | GTAC | 5 cut(s) | 188, 461, 526, 1773, 2237 |
| DdeI | CTNAG | 7 cut(s) | 46, 615, 993, 1047, 1263, 2028, 2696 |
| DinI | GGCGCC | 1 cut(s) | 61 |
| DpnI | GATC | 5 cut(s) | 105, 1040, 1723, 1835, 2033 |
| DpnII | GATC | 5 cut(s) | 103, 1038, 1721, 1833, 2031 |
| DraIII | CACNNNGTG | 1 cut(s) | 75 |
| EaeI | YGGCCR | 2 cut(s) | 66, 1188 |
| Eam1104I | CTCTTC | 2 cut(s) | 620, 1096 |
| EarI | CTCTTC | 2 cut(s) | 620, 1096 |
| Ecl136II | GAGCTC | 1 cut(s) | 2462 |
| Eco130I | CCWWGG | 2 cut(s) | 55, 63 |
| Eco24I | GRGCYC | 1 cut(s) | 2464 |
| Eco32I | GATATC | 1 cut(s) | 1243 |
| Eco47I | GGWCC | 1 cut(s) | 1321 |
| Eco53kI | GAGCTC | 1 cut(s) | 2462 |
| Eco57I | CTGAAG | 2 cut(s) | 221, 2393 |
| Eco81I | CCTNAGG | 1 cut(s) | 993 |
| Eco88I | CYCGRG | 2 cut(s) | 831, 2463 |
| Eco91I | GGTNACC | 1 cut(s) | 562 |
| EcoICRI | GAGCTC | 1 cut(s) | 2462 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1526, 2070 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1321 |
| EcoO65I | GGTNACC | 1 cut(s) | 562 |
| EcoRII | CCWGG | 5 cut(s) | 566, 973, 1323, 2052, 2195 |
| EcoRV | GATATC | 1 cut(s) | 1243 |
| EcoT14I | CCWWGG | 2 cut(s) | 55, 63 |
| EcoT22I | ATGCAT | 2 cut(s) | 957, 1567 |
| EcoT38I | GRGCYC | 1 cut(s) | 2464 |
| EgeI | GGCGCC | 1 cut(s) | 61 |
| EheI | GGCGCC | 1 cut(s) | 61 |
| ErhI | CCWWGG | 2 cut(s) | 55, 63 |
| FaqI | GGGAC | 3 cut(s) | 325, 1564, 2177 |
| FauI | CCCGC | 3 cut(s) | 174, 1702, 2734 |
| FauNDI | CATATG | 1 cut(s) | 1279 |
| FbaI | TGATCA | 1 cut(s) | 1833 |
| FblI | GTMKAC | 3 cut(s) | 409, 759, 1855 |
| Fnu4HI | GCNGC | 6 cut(s) | 374, 1076, 1357, 2373, 2490, 2537 |
| FokI | GGATG | 8 cut(s) | 674, 703, 881, 1040, 1094, 1574, 1667, 2272 |
| FriOI | GRGCYC | 1 cut(s) | 2464 |
| Fsp4HI | GCNGC | 6 cut(s) | 374, 1076, 1357, 2373, 2490, 2537 |
| FspBI | CTAG | 9 cut(s) | 101, 207, 438, 1430, 1662, 2072, 2081, 2454, 2660 |
| GlaI | GCGC | 1 cut(s) | 61 |
| GluI | GCNGC | 6 cut(s) | 374, 1076, 1357, 2373, 2490, 2537 |
| GsuI | CTGGAG | 4 cut(s) | 345, 464, 780, 2062 |
| HaeII | RGCGCY | 1 cut(s) | 63 |
| HaeIII | GGCC | 3 cut(s) | 68, 1190, 2201 |
| HapII | CCGG | 3 cut(s) | 530, 607, 1973 |
| HgaI | GACGC | 1 cut(s) | 1095 |
| HhaI | GCGC | 1 cut(s) | 62 |
| Hin1I | GRCGYC | 3 cut(s) | 60, 318, 1858 |
| Hin6I | GCGC | 1 cut(s) | 60 |
| HinP1I | GCGC | 1 cut(s) | 60 |
| HincII | GTYRAC | 1 cut(s) | 812 |
| HindII | GTYRAC | 1 cut(s) | 812 |
| HindIII | AAGCTT | 3 cut(s) | 509, 1135, 1398 |
| HpaII | CCGG | 3 cut(s) | 530, 607, 1973 |
| HphI | GGTGA | 4 cut(s) | 307, 497, 596, 848 |
| Hpy99I | CGWCG | 3 cut(s) | 323, 1111, 1863 |
| HpyCH4III | ACNGT | 2 cut(s) | 1344, 2168 |
| HpyCH4IV | ACGT | 4 cut(s) | 318, 1858, 2615, 2672 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 212, 235, 1469, 1478, 2119, 2489, 2652, 2750 |
| HpyF3I | CTNAG | 7 cut(s) | 46, 615, 993, 1047, 1263, 2028, 2696 |
| HpySE526I | ACGT | 4 cut(s) | 318, 1858, 2615, 2672 |
| Hsp92I | GRCGYC | 3 cut(s) | 60, 318, 1858 |
| HspAI | GCGC | 1 cut(s) | 60 |
| KasI | GGCGCC | 1 cut(s) | 59 |
| Ksp22I | TGATCA | 1 cut(s) | 1833 |
| Kzo9I | GATC | 5 cut(s) | 103, 1038, 1721, 1833, 2031 |
| LguI | GCTCTTC | 1 cut(s) | 1096 |
| LmnI | GCTCC | 8 cut(s) | 201, 326, 1003, 1599, 1979, 2110, 2302, 2335 |
| Lsp1109I | GCAGC | 4 cut(s) | 385, 1062, 1368, 2501 |
| LweI | GCATC | 6 cut(s) | 964, 1161, 1552, 2408, 2509, 2634 |
| MaeI | CTAG | 9 cut(s) | 101, 207, 438, 1430, 1662, 2072, 2081, 2454, 2660 |
| MaeII | ACGT | 4 cut(s) | 318, 1858, 2615, 2672 |
| MaeIII | GTNAC | 9 cut(s) | 343, 562, 639, 703, 790, 969, 1159, 1631, 1757 |
| MalI | GATC | 5 cut(s) | 105, 1040, 1723, 1835, 2033 |
| MbiI | CCGCTC | 1 cut(s) | 110 |
| MboI | GATC | 5 cut(s) | 103, 1038, 1721, 1833, 2031 |
| MfeI | CAATTG | 2 cut(s) | 413, 1684 |
| MflI | RGATCY | 1 cut(s) | 2031 |
| MhlI | GDGCHC | 6 cut(s) | 331, 823, 1340, 1494, 2464, 2485 |
| MlsI | TGGCCA | 2 cut(s) | 68, 1190 |
| MluNI | TGGCCA | 2 cut(s) | 68, 1190 |
| Mly113I | GGCGCC | 1 cut(s) | 60 |
| MlyI | GAGTC | 3 cut(s) | 1586, 2086, 2099 |
| MmeI | TCCRAC | 5 cut(s) | 21, 204, 1763, 1862, 2589 |
| Mox20I | TGGCCA | 2 cut(s) | 68, 1190 |
| Mph1103I | ATGCAT | 2 cut(s) | 957, 1567 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1538 |
| MscI | TGGCCA | 2 cut(s) | 68, 1190 |
| MseI | TTAA | 8 cut(s) | 500, 1122, 1223, 1455, 1796, 1800, 1914, 2288 |
| MslI | CAYNNNNRTG | 6 cut(s) | 672, 678, 1253, 1463, 1591, 2630 |
| Msp20I | TGGCCA | 2 cut(s) | 68, 1190 |
| MspA1I | CMGCKG | 1 cut(s) | 2492 |
| MspI | CCGG | 3 cut(s) | 530, 607, 1973 |
| MspR9I | CCNGG | 6 cut(s) | 530, 568, 975, 1325, 2054, 2197 |
| MunI | CAATTG | 2 cut(s) | 413, 1684 |
| Mva1269I | GAATGC | 1 cut(s) | 287 |
| MvaI | CCWGG | 5 cut(s) | 568, 975, 1325, 2054, 2197 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 212, 235, 1469, 1478, 2119, 2489, 2652, 2750 |
| NarI | GGCGCC | 1 cut(s) | 60 |
| NciI | CCSGG | 1 cut(s) | 530 |
| NcoI | CCATGG | 2 cut(s) | 55, 63 |
| NdeI | CATATG | 1 cut(s) | 1279 |
| NdeII | GATC | 5 cut(s) | 103, 1038, 1721, 1833, 2031 |
| NheI | GCTAGC | 1 cut(s) | 206 |
| NlaIV | GGNNCC | 4 cut(s) | 61, 999, 1692, 2357 |
| NmeAIII | GCCGAG | 1 cut(s) | 1192 |
| NmuCI | GTSAC | 4 cut(s) | 343, 703, 1159, 1757 |
| NsiI | ATGCAT | 2 cut(s) | 957, 1567 |
| NspI | RCATGY | 2 cut(s) | 640, 1481 |
| PacI | TTAATTAA | 1 cut(s) | 1800 |
| PaeR7I | CTCGAG | 1 cut(s) | 2463 |
| PagI | TCATGA | 1 cut(s) | 1573 |
| PaqCI | CACCTGC | 2 cut(s) | 2203, 2494 |
| PciI | ACATGT | 1 cut(s) | 636 |
| PciSI | GCTCTTC | 1 cut(s) | 1096 |
| PctI | GAATGC | 1 cut(s) | 287 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1538 |
| PfeI | GAWTC | 9 cut(s) | 51, 176, 430, 683, 1843, 2014, 2131, 2583, 2705 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 75 |
| PinAI | ACCGGT | 1 cut(s) | 1972 |
| PkrI | GCNGC | 6 cut(s) | 375, 1077, 1358, 2374, 2491, 2538 |
| PleI | GAGTC | 3 cut(s) | 1585, 2085, 2099 |
| PluTI | GGCGCC | 1 cut(s) | 63 |
| PpsI | GAGTC | 3 cut(s) | 1585, 2085, 2099 |
| PpuMI | RGGWCCY | 1 cut(s) | 1321 |
| PscI | ACATGT | 1 cut(s) | 636 |
| PshAI | GACNNNNGTC | 1 cut(s) | 317 |
| Psp124BI | GAGCTC | 1 cut(s) | 2464 |
| Psp1406I | AACGTT | 1 cut(s) | 2615 |
| Psp5II | RGGWCCY | 1 cut(s) | 1321 |
| Psp6I | CCWGG | 5 cut(s) | 566, 973, 1323, 2052, 2195 |
| PspEI | GGTNACC | 1 cut(s) | 562 |
| PspGI | CCWGG | 5 cut(s) | 566, 973, 1323, 2052, 2195 |
| PspN4I | GGNNCC | 4 cut(s) | 61, 999, 1692, 2357 |
| PspPI | GGNCC | 2 cut(s) | 1321, 2199 |
| PspPPI | RGGWCCY | 1 cut(s) | 1321 |
| PspXI | VCTCGAGB | 1 cut(s) | 2463 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1728, 1760 |
| PstI | CTGCAG | 2 cut(s) | 1080, 2491 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2166 |
| PsuI | RGATCY | 1 cut(s) | 2031 |
| PvuII | CAGCTG | 1 cut(s) | 2492 |
| RsaI | GTAC | 5 cut(s) | 189, 462, 527, 1774, 2238 |
| RsaNI | GTAC | 5 cut(s) | 188, 461, 526, 1773, 2237 |
| RseI | CAYNNNNRTG | 6 cut(s) | 672, 678, 1253, 1463, 1591, 2630 |
| SacI | GAGCTC | 1 cut(s) | 2464 |
| SapI | GCTCTTC | 1 cut(s) | 1096 |
| SaqAI | TTAA | 8 cut(s) | 500, 1122, 1223, 1455, 1796, 1800, 1914, 2288 |
| SatI | GCNGC | 6 cut(s) | 374, 1076, 1357, 2373, 2490, 2537 |
| Sau3AI | GATC | 5 cut(s) | 103, 1038, 1721, 1833, 2031 |
| Sau96I | GGNCC | 2 cut(s) | 1321, 2199 |
| SchI | GAGTC | 3 cut(s) | 1586, 2086, 2099 |
| ScrFI | CCNGG | 6 cut(s) | 530, 568, 975, 1325, 2054, 2197 |
| SduI | GDGCHC | 6 cut(s) | 331, 823, 1340, 1494, 2464, 2485 |
| SfaNI | GCATC | 6 cut(s) | 964, 1161, 1552, 2408, 2509, 2634 |
| SfcI | CTRYAG | 6 cut(s) | 756, 1076, 1734, 1954, 2274, 2487 |
| SfoI | GGCGCC | 1 cut(s) | 61 |
| Sfr274I | CTCGAG | 1 cut(s) | 2463 |
| SinI | GGWCC | 1 cut(s) | 1321 |
| SlaI | CTCGAG | 1 cut(s) | 2463 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 672, 678, 1253, 1463, 1591, 2630 |
| SmlI | CTYRAG | 1 cut(s) | 2463 |
| SmoI | CTYRAG | 1 cut(s) | 2463 |
| SsiI | CCGC | 8 cut(s) | 110, 167, 244, 1227, 1695, 2373, 2536, 2727 |
| SspDI | GGCGCC | 1 cut(s) | 59 |
| SspI | AATATT | 1 cut(s) | 1538 |
| SspMI | CTAG | 9 cut(s) | 101, 207, 438, 1430, 1662, 2072, 2081, 2454, 2660 |
| SstI | GAGCTC | 1 cut(s) | 2464 |
| StyD4I | CCNGG | 6 cut(s) | 528, 566, 973, 1323, 2052, 2195 |
| StyI | CCWWGG | 2 cut(s) | 55, 63 |
| TaaI | ACNGT | 2 cut(s) | 1344, 2168 |
| TaiI | ACGT | 4 cut(s) | 321, 1861, 2618, 2675 |
| TaqI | TCGA | 4 cut(s) | 106, 1949, 2012, 2464 |
| TaqII | GACCGA | 1 cut(s) | 423 |
| TauI | GCSGC | 2 cut(s) | 2375, 2539 |
| TfiI | GAWTC | 9 cut(s) | 51, 176, 430, 683, 1843, 2014, 2131, 2583, 2705 |
| Tru1I | TTAA | 8 cut(s) | 500, 1122, 1223, 1455, 1796, 1800, 1914, 2288 |
| Tru9I | TTAA | 8 cut(s) | 500, 1122, 1223, 1455, 1796, 1800, 1914, 2288 |
| TscAI | CASTG | 4 cut(s) | 792, 2275, 2374, 2635 |
| TseFI | GTSAC | 4 cut(s) | 343, 703, 1159, 1757 |
| TseI | GCWGC | 4 cut(s) | 373, 1075, 1356, 2489 |
| Tsp45I | GTSAC | 4 cut(s) | 343, 703, 1159, 1757 |
| TspDTI | ATGAA | 8 cut(s) | 149, 718, 818, 874, 885, 1044, 1370, 2414 |
| TspGWI | ACGGA | 1 cut(s) | 1427 |
| TspRI | CASTG | 4 cut(s) | 792, 2275, 2374, 2635 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 75 |
| VneI | GTGCAC | 3 cut(s) | 819, 1336, 2481 |
| VpaK11BI | GGWCC | 1 cut(s) | 1321 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1526, 2070 |
| XapI | RAATTY | 1 cut(s) | 1377 |
| XbaI | TCTAGA | 2 cut(s) | 100, 437 |
| XceI | RCATGY | 2 cut(s) | 640, 1481 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1590 |
| XhoI | CTCGAG | 1 cut(s) | 2463 |
| XmiI | GTMKAC | 3 cut(s) | 409, 759, 1855 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1538 |
| XspI | CTAG | 9 cut(s) | 101, 207, 438, 1430, 1662, 2072, 2081, 2454, 2660 |
| ZraI | GACGTC | 2 cut(s) | 319, 1859 |
| Zsp2I | ATGCAT | 2 cut(s) | 957, 1567 |