Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RVT | PF13966 | 60 - 127 | 9.2e-16 | zinc-binding in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 208, 342 |
| AciI | CCGC | 2 cut(s) | 14, 20 |
| AclWI | GGATC | 2 cut(s) | 11, 24 |
| AfaI | GTAC | 2 cut(s) | 93, 288 |
| AflII | CTTAAG | 1 cut(s) | 302 |
| AgsI | TTSAA | 1 cut(s) | 332 |
| AjnI | CCWGG | 1 cut(s) | 99 |
| AluBI | AGCT | 2 cut(s) | 193, 292 |
| AluI | AGCT | 2 cut(s) | 193, 292 |
| Alw26I | GTCTC | 1 cut(s) | 26 |
| AlwI | GGATC | 2 cut(s) | 11, 24 |
| ApeKI | GCWGC | 1 cut(s) | 292 |
| AsuHPI | GGTGA | 1 cut(s) | 256 |
| BamHI | GGATCC | 1 cut(s) | 16 |
| BanI | GGYRCC | 2 cut(s) | 208, 342 |
| BbvI | GCAGC | 1 cut(s) | 279 |
| BccI | CCATC | 2 cut(s) | 137, 162 |
| BceAI | ACGGC | 1 cut(s) | 285 |
| BciT130I | CCWGG | 1 cut(s) | 101 |
| BcoDI | GTCTC | 1 cut(s) | 26 |
| BfrI | CTTAAG | 1 cut(s) | 302 |
| BisI | GCNGC | 1 cut(s) | 293 |
| BlsI | GCNGC | 1 cut(s) | 294 |
| Bme1390I | CCNGG | 1 cut(s) | 101 |
| BmiI | GGNNCC | 3 cut(s) | 18, 210, 344 |
| BmrFI | CCNGG | 1 cut(s) | 101 |
| BmsI | GCATC | 1 cut(s) | 216 |
| BsaAI | YACGTR | 2 cut(s) | 91, 95 |
| Bse3DI | GCAATG | 1 cut(s) | 9 |
| BseBI | CCWGG | 1 cut(s) | 101 |
| BseGI | GGATG | 1 cut(s) | 173 |
| BseMI | GCAATG | 1 cut(s) | 9 |
| BseXI | GCAGC | 1 cut(s) | 279 |
| BshNI | GGYRCC | 2 cut(s) | 208, 342 |
| BsiWI | CGTACG | 1 cut(s) | 91 |
| BsmAI | GTCTC | 1 cut(s) | 26 |
| Bsp143I | GATC | 1 cut(s) | 16 |
| BspACI | CCGC | 2 cut(s) | 14, 20 |
| BspLI | GGNNCC | 3 cut(s) | 18, 210, 344 |
| BspPI | GGATC | 2 cut(s) | 11, 24 |
| BspT107I | GGYRCC | 2 cut(s) | 208, 342 |
| BspTI | CTTAAG | 1 cut(s) | 302 |
| BsrDI | GCAATG | 1 cut(s) | 9 |
| BssMI | GATC | 1 cut(s) | 16 |
| Bst2UI | CCWGG | 1 cut(s) | 101 |
| Bst4CI | ACNGT | 2 cut(s) | 73, 359 |
| BstAFI | CTTAAG | 1 cut(s) | 302 |
| BstBAI | YACGTR | 2 cut(s) | 91, 95 |
| BstF5I | GGATG | 1 cut(s) | 173 |
| BstKTI | GATC | 1 cut(s) | 19 |
| BstMAI | GTCTC | 1 cut(s) | 26 |
| BstMBI | GATC | 1 cut(s) | 16 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 45 |
| BstNI | CCWGG | 1 cut(s) | 101 |
| BstNSI | RCATGY | 1 cut(s) | 122 |
| BstSCI | CCNGG | 1 cut(s) | 99 |
| BstSNI | TACGTA | 1 cut(s) | 95 |
| BstV1I | GCAGC | 1 cut(s) | 279 |
| BstX2I | RGATCY | 1 cut(s) | 16 |
| BstYI | RGATCY | 1 cut(s) | 16 |
| BtsCI | GGATG | 1 cut(s) | 173 |
| BtsIMutI | CAGTG | 2 cut(s) | 48, 355 |
| Csp6I | GTAC | 2 cut(s) | 92, 287 |
| CviAII | CATG | 1 cut(s) | 119 |
| CviJI | RGCY | 4 cut(s) | 39, 99, 193, 292 |
| CviKI_1 | RGCY | 4 cut(s) | 39, 99, 193, 292 |
| CviQI | GTAC | 2 cut(s) | 92, 287 |
| DpnI | GATC | 1 cut(s) | 18 |
| DpnII | GATC | 1 cut(s) | 16 |
| EciI | GGCGGA | 1 cut(s) | 9 |
| Eco105I | TACGTA | 1 cut(s) | 95 |
| EcoRII | CCWGG | 1 cut(s) | 99 |
| EcoT22I | ATGCAT | 1 cut(s) | 231 |
| FaeI | CATG | 1 cut(s) | 122 |
| FaiI | YATR | 5 cut(s) | 69, 120, 196, 231, 321 |
| FatI | CATG | 1 cut(s) | 118 |
| Fnu4HI | GCNGC | 1 cut(s) | 293 |
| FokI | GGATG | 1 cut(s) | 180 |
| Fsp4HI | GCNGC | 1 cut(s) | 293 |
| GluI | GCNGC | 1 cut(s) | 293 |
| Hin1II | CATG | 1 cut(s) | 122 |
| HphI | GGTGA | 1 cut(s) | 256 |
| Hpy188I | TCNGA | 1 cut(s) | 163 |
| Hpy188III | TCNNGA | 3 cut(s) | 29, 60, 133 |
| HpyAV | CCTTC | 3 cut(s) | 158, 199, 241 |
| HpyCH4III | ACNGT | 2 cut(s) | 73, 359 |
| HpyCH4IV | ACGT | 2 cut(s) | 90, 94 |
| HpyCH4V | TGCA | 3 cut(s) | 122, 229, 355 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 45 |
| HpySE526I | ACGT | 2 cut(s) | 90, 94 |
| Hsp92II | CATG | 1 cut(s) | 122 |
| Kzo9I | GATC | 1 cut(s) | 16 |
| LpnPI | CCDG | 6 cut(s) | 14, 21, 45, 86, 113, 325 |
| Lsp1109I | GCAGC | 1 cut(s) | 279 |
| LweI | GCATC | 1 cut(s) | 216 |
| MaeII | ACGT | 2 cut(s) | 90, 94 |
| MaeIII | GTNAC | 1 cut(s) | 273 |
| MalI | GATC | 1 cut(s) | 18 |
| MboI | GATC | 1 cut(s) | 16 |
| MboII | GAAGA | 3 cut(s) | 75, 88, 344 |
| MflI | RGATCY | 1 cut(s) | 16 |
| MluCI | AATT | 1 cut(s) | 325 |
| MnlI | CCTC | 3 cut(s) | 152, 222, 356 |
| Mph1103I | ATGCAT | 1 cut(s) | 231 |
| MseI | TTAA | 3 cut(s) | 108, 222, 303 |
| MspA1I | CMGCKG | 1 cut(s) | 292 |
| MspCI | CTTAAG | 1 cut(s) | 302 |
| MspR9I | CCNGG | 1 cut(s) | 101 |
| MvaI | CCWGG | 1 cut(s) | 101 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 45 |
| NdeII | GATC | 1 cut(s) | 16 |
| NlaIII | CATG | 1 cut(s) | 122 |
| NlaIV | GGNNCC | 3 cut(s) | 18, 210, 344 |
| NsiI | ATGCAT | 1 cut(s) | 231 |
| NspI | RCATGY | 1 cut(s) | 122 |
| Pfl23II | CGTACG | 1 cut(s) | 91 |
| PkrI | GCNGC | 1 cut(s) | 294 |
| Ppu21I | YACGTR | 2 cut(s) | 91, 95 |
| Psp6I | CCWGG | 1 cut(s) | 99 |
| PspGI | CCWGG | 1 cut(s) | 99 |
| PspLI | CGTACG | 1 cut(s) | 91 |
| PspN4I | GGNNCC | 3 cut(s) | 18, 210, 344 |
| PsuI | RGATCY | 1 cut(s) | 16 |
| PvuII | CAGCTG | 1 cut(s) | 292 |
| RsaI | GTAC | 2 cut(s) | 93, 288 |
| RsaNI | GTAC | 2 cut(s) | 92, 287 |
| SaqAI | TTAA | 3 cut(s) | 108, 222, 303 |
| SatI | GCNGC | 1 cut(s) | 293 |
| Sau3AI | GATC | 1 cut(s) | 16 |
| ScrFI | CCNGG | 1 cut(s) | 101 |
| SetI | ASST | 8 cut(s) | 93, 97, 105, 144, 195, 210, 294, 348 |
| SfaNI | GCATC | 1 cut(s) | 216 |
| SmlI | CTYRAG | 1 cut(s) | 302 |
| SmoI | CTYRAG | 1 cut(s) | 302 |
| SnaBI | TACGTA | 1 cut(s) | 95 |
| Sse9I | AATT | 1 cut(s) | 325 |
| SsiI | CCGC | 2 cut(s) | 14, 20 |
| SspI | AATATT | 1 cut(s) | 255 |
| StyD4I | CCNGG | 1 cut(s) | 99 |
| TaaI | ACNGT | 2 cut(s) | 73, 359 |
| TaiI | ACGT | 2 cut(s) | 93, 97 |
| TasI | AATT | 1 cut(s) | 325 |
| TatI | WGTACW | 1 cut(s) | 286 |
| Tru1I | TTAA | 3 cut(s) | 108, 222, 303 |
| Tru9I | TTAA | 3 cut(s) | 108, 222, 303 |
| TscAI | CASTG | 2 cut(s) | 55, 362 |
| TseI | GCWGC | 1 cut(s) | 292 |
| TspRI | CASTG | 2 cut(s) | 55, 362 |
| Vha464I | CTTAAG | 1 cut(s) | 302 |
| XceI | RCATGY | 1 cut(s) | 122 |
| Zsp2I | ATGCAT | 1 cut(s) | 231 |