ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4666 | PF15697 | 1 - 107 | 3.9e-35 | Domain of unknown function (DUF4666) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 216 |
| AccIII | TCCGGA | 1 cut(s) | 80 |
| AciI | CCGC | 3 cut(s) | 216, 223, 323 |
| AclWI | GGATC | 1 cut(s) | 192 |
| AcuI | CTGAAG | 1 cut(s) | 33 |
| AfaI | GTAC | 1 cut(s) | 186 |
| AgsI | TTSAA | 2 cut(s) | 24, 254 |
| AjnI | CCWGG | 1 cut(s) | 340 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 56, 88 |
| AluBI | AGCT | 3 cut(s) | 88, 123, 228 |
| AluI | AGCT | 3 cut(s) | 88, 123, 228 |
| Alw26I | GTCTC | 1 cut(s) | 277 |
| AlwI | GGATC | 1 cut(s) | 192 |
| Aor13HI | TCCGGA | 1 cut(s) | 80 |
| AoxI | GGCC | 1 cut(s) | 170 |
| ApeKI | GCWGC | 1 cut(s) | 225 |
| BbvI | GCAGC | 1 cut(s) | 237 |
| BciT130I | CCWGG | 1 cut(s) | 342 |
| BcoDI | GTCTC | 1 cut(s) | 277 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 169 |
| BglII | AGATCT | 2 cut(s) | 17, 237 |
| BisI | GCNGC | 2 cut(s) | 217, 226 |
| BlsI | GCNGC | 2 cut(s) | 218, 227 |
| Bme1390I | CCNGG | 1 cut(s) | 342 |
| BmrFI | CCNGG | 1 cut(s) | 342 |
| BsaI | GGTCTC | 1 cut(s) | 277 |
| BsaWI | WCCGGW | 1 cut(s) | 80 |
| Bse118I | RCCGGY | 1 cut(s) | 244 |
| BseAI | TCCGGA | 1 cut(s) | 80 |
| BseBI | CCWGG | 1 cut(s) | 342 |
| BseGI | GGATG | 2 cut(s) | 70, 160 |
| BseMII | CTCAG | 2 cut(s) | 117, 158 |
| BseRI | GAGGAG | 1 cut(s) | 143 |
| BseXI | GCAGC | 1 cut(s) | 237 |
| Bsh1236I | CGCG | 1 cut(s) | 216 |
| BshFI | GGCC | 1 cut(s) | 172 |
| BsiSI | CCGG | 2 cut(s) | 81, 245 |
| BsmAI | GTCTC | 1 cut(s) | 277 |
| BsnI | GGCC | 1 cut(s) | 172 |
| Bso31I | GGTCTC | 1 cut(s) | 277 |
| Bsp13I | TCCGGA | 1 cut(s) | 80 |
| Bsp1407I | TGTACA | 1 cut(s) | 184 |
| Bsp143I | GATC | 4 cut(s) | 17, 197, 237, 356 |
| BspACI | CCGC | 3 cut(s) | 216, 223, 323 |
| BspANI | GGCC | 1 cut(s) | 172 |
| BspCNI | CTCAG | 2 cut(s) | 118, 159 |
| BspEI | TCCGGA | 1 cut(s) | 80 |
| BspFNI | CGCG | 1 cut(s) | 216 |
| BspPI | GGATC | 1 cut(s) | 192 |
| BspQI | GCTCTTC | 1 cut(s) | 52 |
| BspTNI | GGTCTC | 1 cut(s) | 277 |
| BsrFI | RCCGGY | 1 cut(s) | 244 |
| BsrGI | TGTACA | 1 cut(s) | 184 |
| BssAI | RCCGGY | 1 cut(s) | 244 |
| BssMI | GATC | 4 cut(s) | 17, 197, 237, 356 |
| Bst2UI | CCWGG | 1 cut(s) | 342 |
| Bst4CI | ACNGT | 3 cut(s) | 184, 206, 261 |
| Bst6I | CTCTTC | 1 cut(s) | 52 |
| BstAUI | TGTACA | 1 cut(s) | 184 |
| BstC8I | GCNNGC | 2 cut(s) | 246, 347 |
| BstDEI | CTNAG | 2 cut(s) | 126, 167 |
| BstF5I | GGATG | 2 cut(s) | 70, 160 |
| BstFNI | CGCG | 1 cut(s) | 216 |
| BstKTI | GATC | 4 cut(s) | 20, 200, 240, 359 |
| BstMAI | GTCTC | 1 cut(s) | 277 |
| BstMBI | GATC | 4 cut(s) | 17, 197, 237, 356 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 169, 222, 225, 346, 351 |
| BstNI | CCWGG | 1 cut(s) | 342 |
| BstNSI | RCATGY | 1 cut(s) | 282 |
| BstSCI | CCNGG | 1 cut(s) | 340 |
| BstUI | CGCG | 1 cut(s) | 216 |
| BstV1I | GCAGC | 1 cut(s) | 237 |
| BstX2I | RGATCY | 3 cut(s) | 17, 197, 237 |
| BstYI | RGATCY | 3 cut(s) | 17, 197, 237 |
| BsuRI | GGCC | 1 cut(s) | 172 |
| BtsCI | GGATG | 2 cut(s) | 70, 160 |
| BtsIMutI | CAGTG | 1 cut(s) | 164 |
| Cac8I | GCNNGC | 2 cut(s) | 246, 347 |
| Cfr10I | RCCGGY | 1 cut(s) | 244 |
| CseI | GACGC | 1 cut(s) | 222 |
| Csp6I | GTAC | 1 cut(s) | 185 |
| CviAII | CATG | 1 cut(s) | 279 |
| CviQI | GTAC | 1 cut(s) | 185 |
| DdeI | CTNAG | 2 cut(s) | 126, 167 |
| DpnI | GATC | 4 cut(s) | 19, 199, 239, 358 |
| DpnII | GATC | 4 cut(s) | 17, 197, 237, 356 |
| Eam1104I | CTCTTC | 1 cut(s) | 52 |
| EarI | CTCTTC | 1 cut(s) | 52 |
| Eco31I | GGTCTC | 1 cut(s) | 277 |
| Eco57I | CTGAAG | 1 cut(s) | 33 |
| EcoRII | CCWGG | 1 cut(s) | 340 |
| FaeI | CATG | 1 cut(s) | 282 |
| FaiI | YATR | 2 cut(s) | 146, 280 |
| FatI | CATG | 1 cut(s) | 278 |
| Fnu4HI | GCNGC | 2 cut(s) | 217, 226 |
| FokI | GGATG | 2 cut(s) | 77, 167 |
| Fsp4HI | GCNGC | 2 cut(s) | 217, 226 |
| GluI | GCNGC | 2 cut(s) | 217, 226 |
| HaeIII | GGCC | 1 cut(s) | 172 |
| HapII | CCGG | 2 cut(s) | 81, 245 |
| HgaI | GACGC | 1 cut(s) | 222 |
| Hin1II | CATG | 1 cut(s) | 282 |
| HpaII | CCGG | 2 cut(s) | 81, 245 |
| Hpy188I | TCNGA | 2 cut(s) | 35, 127 |
| Hpy188III | TCNNGA | 2 cut(s) | 81, 178 |
| Hpy99I | CGWCG | 1 cut(s) | 265 |
| HpyAV | CCTTC | 1 cut(s) | 30 |
| HpyCH4III | ACNGT | 3 cut(s) | 184, 206, 261 |
| HpyCH4IV | ACGT | 1 cut(s) | 361 |
| HpyCH4V | TGCA | 2 cut(s) | 13, 278 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 169, 222, 225, 346, 351 |
| HpyF3I | CTNAG | 2 cut(s) | 126, 167 |
| HpySE526I | ACGT | 1 cut(s) | 361 |
| Hsp92II | CATG | 1 cut(s) | 282 |
| Kpn2I | TCCGGA | 1 cut(s) | 80 |
| KroI | GCCGGC | 1 cut(s) | 244 |
| KroNI | GCCGGC | 1 cut(s) | 246 |
| Kzo9I | GATC | 4 cut(s) | 17, 197, 237, 356 |
| LguI | GCTCTTC | 1 cut(s) | 52 |
| LmnI | GCTCC | 1 cut(s) | 332 |
| LpnPI | CCDG | 8 cut(s) | 36, 55, 94, 117, 216, 258, 327, 354 |
| Lsp1109I | GCAGC | 1 cut(s) | 237 |
| MaeII | ACGT | 1 cut(s) | 361 |
| MaeIII | GTNAC | 1 cut(s) | 362 |
| MalI | GATC | 4 cut(s) | 19, 199, 239, 358 |
| MboI | GATC | 4 cut(s) | 17, 197, 237, 356 |
| MboII | GAAGA | 3 cut(s) | 12, 39, 247 |
| MflI | RGATCY | 3 cut(s) | 17, 197, 237 |
| MmeI | TCCRAC | 1 cut(s) | 225 |
| MnlI | CCTC | 4 cut(s) | 121, 162, 203, 319 |
| MroI | TCCGGA | 1 cut(s) | 80 |
| MroNI | GCCGGC | 1 cut(s) | 244 |
| MseI | TTAA | 2 cut(s) | 150, 159 |
| MspI | CCGG | 2 cut(s) | 81, 245 |
| MspR9I | CCNGG | 1 cut(s) | 342 |
| MvaI | CCWGG | 1 cut(s) | 342 |
| MvnI | CGCG | 1 cut(s) | 216 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 169, 222, 225, 346, 351 |
| NaeI | GCCGGC | 1 cut(s) | 246 |
| NdeII | GATC | 4 cut(s) | 17, 197, 237, 356 |
| NgoMIV | GCCGGC | 1 cut(s) | 244 |
| NlaIII | CATG | 1 cut(s) | 282 |
| NspI | RCATGY | 1 cut(s) | 282 |
| PciSI | GCTCTTC | 1 cut(s) | 52 |
| PdiI | GCCGGC | 1 cut(s) | 246 |
| PkrI | GCNGC | 2 cut(s) | 218, 227 |
| Psp6I | CCWGG | 1 cut(s) | 340 |
| PspGI | CCWGG | 1 cut(s) | 340 |
| PsuI | RGATCY | 3 cut(s) | 17, 197, 237 |
| RsaI | GTAC | 1 cut(s) | 186 |
| RsaNI | GTAC | 1 cut(s) | 185 |
| SapI | GCTCTTC | 1 cut(s) | 52 |
| SaqAI | TTAA | 2 cut(s) | 150, 159 |
| SatI | GCNGC | 2 cut(s) | 217, 226 |
| Sau3AI | GATC | 4 cut(s) | 17, 197, 237, 356 |
| ScrFI | CCNGG | 1 cut(s) | 342 |
| SetI | ASST | 6 cut(s) | 74, 90, 125, 230, 273, 364 |
| SsiI | CCGC | 3 cut(s) | 216, 223, 323 |
| StyD4I | CCNGG | 1 cut(s) | 340 |
| TaaI | ACNGT | 3 cut(s) | 184, 206, 261 |
| TaiI | ACGT | 1 cut(s) | 364 |
| TatI | WGTACW | 1 cut(s) | 184 |
| TauI | GCSGC | 1 cut(s) | 219 |
| Tru1I | TTAA | 2 cut(s) | 150, 159 |
| Tru9I | TTAA | 2 cut(s) | 150, 159 |
| TscAI | CASTG | 1 cut(s) | 171 |
| TseI | GCWGC | 1 cut(s) | 225 |
| TspRI | CASTG | 1 cut(s) | 171 |
| XceI | RCATGY | 1 cut(s) | 282 |