ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 353 |
| Acc65I | GGTACC | 1 cut(s) | 591 |
| AccB1I | GGYRCC | 1 cut(s) | 591 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 642 |
| AccBSI | CCGCTC | 1 cut(s) | 1015 |
| AciI | CCGC | 6 cut(s) | 304, 359, 654, 917, 1015, 1313 |
| AclWI | GGATC | 1 cut(s) | 975 |
| AcvI | CACGTG | 1 cut(s) | 258 |
| AfaI | GTAC | 5 cut(s) | 203, 403, 593, 835, 1284 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 642, 726, 1163 |
| AflII | CTTAAG | 1 cut(s) | 1172 |
| AflIII | ACRYGT | 2 cut(s) | 255, 838 |
| AgsI | TTSAA | 3 cut(s) | 892, 1049, 1097 |
| AjnI | CCWGG | 1 cut(s) | 123 |
| AluBI | AGCT | 1 cut(s) | 463 |
| AluI | AGCT | 1 cut(s) | 463 |
| AlwI | GGATC | 1 cut(s) | 975 |
| AoxI | GGCC | 4 cut(s) | 630, 693, 883, 1038 |
| ApaI | GGGCCC | 1 cut(s) | 697 |
| ApeKI | GCWGC | 3 cut(s) | 227, 361, 1262 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 701, 733 |
| AseI | ATTAAT | 1 cut(s) | 1179 |
| Asp718I | GGTACC | 1 cut(s) | 591 |
| AspS9I | GGNCC | 7 cut(s) | 355, 424, 693, 694, 793, 884, 1038 |
| AsuHPI | GGTGA | 4 cut(s) | 430, 500, 724, 1246 |
| AvaII | GGWCC | 3 cut(s) | 355, 424, 793 |
| AxyI | CCTNAGG | 1 cut(s) | 1137 |
| BaeGI | GKGCMC | 2 cut(s) | 535, 697 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 825, 858 |
| BanI | GGYRCC | 1 cut(s) | 591 |
| BanII | GRGCYC | 1 cut(s) | 697 |
| BbrPI | CACGTG | 1 cut(s) | 258 |
| BbvI | GCAGC | 3 cut(s) | 214, 373, 1249 |
| BccI | CCATC | 5 cut(s) | 46, 415, 1078, 1181, 1202 |
| BciT130I | CCWGG | 1 cut(s) | 125 |
| BfaI | CTAG | 3 cut(s) | 36, 950, 1272 |
| BfmI | CTRYAG | 1 cut(s) | 811 |
| BfrI | CTTAAG | 1 cut(s) | 1172 |
| BisI | GCNGC | 4 cut(s) | 228, 362, 655, 1263 |
| BlsI | GCNGC | 4 cut(s) | 229, 363, 656, 1264 |
| BmcAI | AGTACT | 1 cut(s) | 203 |
| Bme1390I | CCNGG | 1 cut(s) | 125 |
| Bme18I | GGWCC | 3 cut(s) | 355, 424, 793 |
| BmgT120I | GGNCC | 7 cut(s) | 355, 424, 693, 694, 793, 884, 1038 |
| BmiI | GGNNCC | 7 cut(s) | 356, 357, 593, 694, 695, 795, 1039 |
| BmrFI | CCNGG | 1 cut(s) | 125 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 17, 49 |
| BsaAI | YACGTR | 1 cut(s) | 258 |
| BsaJI | CCNNGG | 1 cut(s) | 350 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 617, 647, 1218, 1248 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 642, 726, 1163 |
| Bse1I | ACTGG | 2 cut(s) | 53, 1073 |
| Bse21I | CCTNAGG | 1 cut(s) | 1137 |
| Bse3DI | GCAATG | 1 cut(s) | 1157 |
| BseBI | CCWGG | 1 cut(s) | 125 |
| BseDI | CCNNGG | 1 cut(s) | 350 |
| BseGI | GGATG | 4 cut(s) | 28, 57, 823, 1213 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 642, 726, 1163 |
| BseMI | GCAATG | 1 cut(s) | 1157 |
| BseMII | CTCAG | 2 cut(s) | 458, 1002 |
| BseNI | ACTGG | 2 cut(s) | 53, 1073 |
| BseRI | GAGGAG | 3 cut(s) | 258, 277, 422 |
| BseSI | GKGCMC | 2 cut(s) | 535, 697 |
| BseXI | GCAGC | 3 cut(s) | 214, 373, 1249 |
| BseYI | CCCAGC | 1 cut(s) | 913 |
| BshFI | GGCC | 4 cut(s) | 632, 695, 885, 1040 |
| BshNI | GGYRCC | 1 cut(s) | 591 |
| BslFI | GGGAC | 2 cut(s) | 341, 1253 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 642, 726, 1163 |
| BsmFI | GGGAC | 2 cut(s) | 341, 1253 |
| BsmI | GAATGC | 1 cut(s) | 510 |
| BsnI | GGCC | 4 cut(s) | 632, 695, 885, 1040 |
| Bsp120I | GGGCCC | 1 cut(s) | 693 |
| Bsp1286I | GDGCHC | 2 cut(s) | 535, 697 |
| Bsp1407I | TGTACA | 1 cut(s) | 1282 |
| Bsp143I | GATC | 2 cut(s) | 538, 967 |
| BspACI | CCGC | 6 cut(s) | 304, 359, 654, 917, 1015, 1313 |
| BspANI | GGCC | 4 cut(s) | 632, 695, 885, 1040 |
| BspCNI | CTCAG | 2 cut(s) | 459, 1003 |
| BspLI | GGNNCC | 7 cut(s) | 356, 357, 593, 694, 695, 795, 1039 |
| BspMAI | CTGCAG | 1 cut(s) | 815 |
| BspPI | GGATC | 1 cut(s) | 975 |
| BspT107I | GGYRCC | 1 cut(s) | 591 |
| BspTI | CTTAAG | 1 cut(s) | 1172 |
| BsrBI | CCGCTC | 1 cut(s) | 1015 |
| BsrDI | GCAATG | 1 cut(s) | 1157 |
| BsrGI | TGTACA | 1 cut(s) | 1282 |
| BsrI | ACTGG | 2 cut(s) | 53, 1073 |
| BssECI | CCNNGG | 1 cut(s) | 350 |
| BssMI | GATC | 2 cut(s) | 538, 967 |
| Bst2UI | CCWGG | 1 cut(s) | 125 |
| Bst4CI | ACNGT | 4 cut(s) | 9, 323, 578, 964 |
| BstAFI | CTTAAG | 1 cut(s) | 1172 |
| BstAUI | TGTACA | 1 cut(s) | 1282 |
| BstBAI | YACGTR | 1 cut(s) | 258 |
| BstC8I | GCNNGC | 1 cut(s) | 508 |
| BstDEI | CTNAG | 3 cut(s) | 467, 1011, 1137 |
| BstDSI | CCRYGG | 1 cut(s) | 350 |
| BstF5I | GGATG | 4 cut(s) | 28, 57, 823, 1213 |
| BstKTI | GATC | 2 cut(s) | 541, 970 |
| BstMBI | GATC | 2 cut(s) | 538, 967 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 134, 736, 1268, 1325 |
| BstNI | CCWGG | 1 cut(s) | 125 |
| BstNSI | RCATGY | 3 cut(s) | 510, 842, 1289 |
| BstSCI | CCNGG | 1 cut(s) | 123 |
| BstSFI | CTRYAG | 1 cut(s) | 811 |
| BstSLI | GKGCMC | 2 cut(s) | 535, 697 |
| BstV1I | GCAGC | 3 cut(s) | 214, 373, 1249 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1137 |
| BsuRI | GGCC | 4 cut(s) | 632, 695, 885, 1040 |
| BtgI | CCRYGG | 1 cut(s) | 350 |
| BtsCI | GGATG | 4 cut(s) | 28, 57, 823, 1213 |
| BtsIMutI | CAGTG | 3 cut(s) | 46, 583, 1066 |
| Cac8I | GCNNGC | 1 cut(s) | 508 |
| Cfr13I | GGNCC | 7 cut(s) | 355, 424, 693, 694, 793, 884, 1038 |
| Csp6I | GTAC | 5 cut(s) | 202, 402, 592, 834, 1283 |
| CviQI | GTAC | 5 cut(s) | 202, 402, 592, 834, 1283 |
| DdeI | CTNAG | 3 cut(s) | 467, 1011, 1137 |
| DpnI | GATC | 2 cut(s) | 540, 969 |
| DpnII | GATC | 2 cut(s) | 538, 967 |
| DraI | TTTAAA | 1 cut(s) | 847 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 353 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 353 |
| Eco147I | AGGCCT | 1 cut(s) | 632 |
| Eco24I | GRGCYC | 1 cut(s) | 697 |
| Eco47I | GGWCC | 3 cut(s) | 355, 424, 793 |
| Eco72I | CACGTG | 1 cut(s) | 258 |
| Eco81I | CCTNAGG | 1 cut(s) | 1137 |
| EcoO109I | RGGNCCY | 3 cut(s) | 355, 693, 793 |
| EcoRII | CCWGG | 1 cut(s) | 123 |
| EcoT22I | ATGCAT | 1 cut(s) | 512 |
| EcoT38I | GRGCYC | 1 cut(s) | 697 |
| FaqI | GGGAC | 2 cut(s) | 341, 1253 |
| FauI | CCCGC | 2 cut(s) | 366, 910 |
| Fnu4HI | GCNGC | 4 cut(s) | 228, 362, 655, 1263 |
| FokI | GGATG | 4 cut(s) | 35, 64, 830, 1220 |
| FriOI | GRGCYC | 1 cut(s) | 697 |
| Fsp4HI | GCNGC | 4 cut(s) | 228, 362, 655, 1263 |
| FspBI | CTAG | 3 cut(s) | 36, 950, 1272 |
| GluI | GCNGC | 4 cut(s) | 228, 362, 655, 1263 |
| GsaI | CCCAGC | 1 cut(s) | 917 |
| HaeIII | GGCC | 4 cut(s) | 632, 695, 885, 1040 |
| HincII | GTYRAC | 1 cut(s) | 439 |
| HindII | GTYRAC | 1 cut(s) | 439 |
| HinfI | GANTC | 6 cut(s) | 32, 43, 99, 248, 286, 1057 |
| HphI | GGTGA | 4 cut(s) | 430, 500, 724, 1246 |
| Hpy166II | GTNNAC | 5 cut(s) | 115, 439, 480, 664, 836 |
| Hpy188I | TCNGA | 5 cut(s) | 104, 291, 468, 972, 1161 |
| Hpy188III | TCNNGA | 2 cut(s) | 36, 1006 |
| Hpy8I | GTNNAC | 5 cut(s) | 115, 439, 480, 664, 836 |
| Hpy99I | CGWCG | 1 cut(s) | 175 |
| HpyAV | CCTTC | 6 cut(s) | 76, 80, 229, 768, 1027, 1161 |
| HpyCH4III | ACNGT | 4 cut(s) | 9, 323, 578, 964 |
| HpyCH4IV | ACGT | 2 cut(s) | 170, 257 |
| HpyCH4V | TGCA | 8 cut(s) | 182, 230, 506, 510, 739, 813, 860, 1289 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 134, 736, 1268, 1325 |
| HpyF3I | CTNAG | 3 cut(s) | 467, 1011, 1137 |
| HpySE526I | ACGT | 2 cut(s) | 170, 257 |
| KflI | GGGWCCC | 1 cut(s) | 355 |
| KpnI | GGTACC | 1 cut(s) | 595 |
| Kzo9I | GATC | 2 cut(s) | 538, 967 |
| LmnI | GCTCC | 1 cut(s) | 460 |
| Lsp1109I | GCAGC | 3 cut(s) | 214, 373, 1249 |
| MaeI | CTAG | 3 cut(s) | 36, 950, 1272 |
| MaeII | ACGT | 2 cut(s) | 170, 257 |
| MalI | GATC | 2 cut(s) | 540, 969 |
| MbiI | CCGCTC | 1 cut(s) | 1015 |
| MboI | GATC | 2 cut(s) | 538, 967 |
| MboII | GAAGA | 2 cut(s) | 91, 790 |
| MhlI | GDGCHC | 2 cut(s) | 535, 697 |
| MluCI | AATT | 7 cut(s) | 153, 293, 501, 821, 848, 893, 1042 |
| MlyI | GAGTC | 1 cut(s) | 26 |
| Mph1103I | ATGCAT | 1 cut(s) | 512 |
| MspA1I | CMGCKG | 1 cut(s) | 917 |
| MspCI | CTTAAG | 1 cut(s) | 1172 |
| MspR9I | CCNGG | 1 cut(s) | 125 |
| Mva1269I | GAATGC | 1 cut(s) | 510 |
| MvaI | CCWGG | 1 cut(s) | 125 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 134, 736, 1268, 1325 |
| NdeII | GATC | 2 cut(s) | 538, 967 |
| NlaIV | GGNNCC | 7 cut(s) | 356, 357, 593, 694, 695, 795, 1039 |
| NsiI | ATGCAT | 1 cut(s) | 512 |
| NspI | RCATGY | 3 cut(s) | 510, 842, 1289 |
| PaeI | GCATGC | 1 cut(s) | 510 |
| PceI | AGGCCT | 1 cut(s) | 632 |
| PciI | ACATGT | 1 cut(s) | 838 |
| PctI | GAATGC | 1 cut(s) | 510 |
| PfeI | GAWTC | 5 cut(s) | 43, 99, 248, 286, 1057 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 642 |
| PkrI | GCNGC | 4 cut(s) | 229, 363, 656, 1264 |
| PleI | GAGTC | 1 cut(s) | 26 |
| PmaCI | CACGTG | 1 cut(s) | 258 |
| PmlI | CACGTG | 1 cut(s) | 258 |
| PpsI | GAGTC | 1 cut(s) | 26 |
| Ppu21I | YACGTR | 1 cut(s) | 258 |
| PpuMI | RGGWCCY | 2 cut(s) | 355, 793 |
| PscI | ACATGT | 1 cut(s) | 838 |
| PshBI | ATTAAT | 1 cut(s) | 1179 |
| Psp5II | RGGWCCY | 2 cut(s) | 355, 793 |
| Psp6I | CCWGG | 1 cut(s) | 123 |
| PspCI | CACGTG | 1 cut(s) | 258 |
| PspFI | CCCAGC | 1 cut(s) | 913 |
| PspGI | CCWGG | 1 cut(s) | 123 |
| PspN4I | GGNNCC | 7 cut(s) | 356, 357, 593, 694, 695, 795, 1039 |
| PspOMI | GGGCCC | 1 cut(s) | 693 |
| PspPI | GGNCC | 7 cut(s) | 355, 424, 693, 694, 793, 884, 1038 |
| PspPPI | RGGWCCY | 2 cut(s) | 355, 793 |
| PstI | CTGCAG | 1 cut(s) | 815 |
| RsaI | GTAC | 5 cut(s) | 203, 403, 593, 835, 1284 |
| RsaNI | GTAC | 5 cut(s) | 202, 402, 592, 834, 1283 |
| SatI | GCNGC | 4 cut(s) | 228, 362, 655, 1263 |
| Sau3AI | GATC | 2 cut(s) | 538, 967 |
| Sau96I | GGNCC | 7 cut(s) | 355, 424, 693, 694, 793, 884, 1038 |
| ScaI | AGTACT | 1 cut(s) | 203 |
| SchI | GAGTC | 1 cut(s) | 26 |
| ScrFI | CCNGG | 1 cut(s) | 125 |
| SduI | GDGCHC | 2 cut(s) | 535, 697 |
| SfcI | CTRYAG | 1 cut(s) | 811 |
| SinI | GGWCC | 3 cut(s) | 355, 424, 793 |
| SmlI | CTYRAG | 1 cut(s) | 1172 |
| SmoI | CTYRAG | 1 cut(s) | 1172 |
| SphI | GCATGC | 1 cut(s) | 510 |
| Sse9I | AATT | 7 cut(s) | 153, 293, 501, 821, 848, 893, 1042 |
| SseBI | AGGCCT | 1 cut(s) | 632 |
| SsiI | CCGC | 6 cut(s) | 304, 359, 654, 917, 1015, 1313 |
| SspI | AATATT | 3 cut(s) | 331, 674, 1024 |
| SspMI | CTAG | 3 cut(s) | 36, 950, 1272 |
| StuI | AGGCCT | 1 cut(s) | 632 |
| StyD4I | CCNGG | 1 cut(s) | 123 |
| TaaI | ACNGT | 4 cut(s) | 9, 323, 578, 964 |
| TaiI | ACGT | 2 cut(s) | 173, 260 |
| TaqI | TCGA | 1 cut(s) | 77 |
| TasI | AATT | 7 cut(s) | 153, 293, 501, 821, 848, 893, 1042 |
| TatI | WGTACW | 2 cut(s) | 201, 1282 |
| TauI | GCSGC | 1 cut(s) | 657 |
| TfiI | GAWTC | 5 cut(s) | 43, 99, 248, 286, 1057 |
| TscAI | CASTG | 3 cut(s) | 53, 583, 1073 |
| TseI | GCWGC | 3 cut(s) | 227, 361, 1262 |
| TspDTI | ATGAA | 5 cut(s) | 211, 462, 834, 854, 1070 |
| TspGWI | ACGGA | 1 cut(s) | 497 |
| TspRI | CASTG | 3 cut(s) | 53, 583, 1073 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 642 |
| Vha464I | CTTAAG | 1 cut(s) | 1172 |
| VpaK11BI | GGWCC | 3 cut(s) | 355, 424, 793 |
| VspI | ATTAAT | 1 cut(s) | 1179 |
| XbaI | TCTAGA | 1 cut(s) | 35 |
| XceI | RCATGY | 3 cut(s) | 510, 842, 1289 |
| XspI | CTAG | 3 cut(s) | 36, 950, 1272 |
| ZrmI | AGTACT | 1 cut(s) | 203 |
| Zsp2I | ATGCAT | 1 cut(s) | 512 |