Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 982 |
| Acc36I | ACCTGC | 1 cut(s) | 982 |
| AccB1I | GGYRCC | 1 cut(s) | 283 |
| AccI | GTMKAC | 1 cut(s) | 754 |
| AccII | CGCG | 3 cut(s) | 23, 94, 127 |
| AciI | CCGC | 3 cut(s) | 26, 130, 234 |
| AclWI | GGATC | 3 cut(s) | 430, 1012, 1025 |
| AcoI | YGGCCR | 5 cut(s) | 30, 46, 134, 150, 306 |
| AcsI | RAATTY | 3 cut(s) | 54, 158, 290 |
| AdeI | CACNNNGTG | 1 cut(s) | 560 |
| AfaI | GTAC | 1 cut(s) | 884 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 315 |
| AgsI | TTSAA | 1 cut(s) | 193 |
| AjnI | CCWGG | 1 cut(s) | 1108 |
| AleI | CACNNNNGTG | 1 cut(s) | 252 |
| AluBI | AGCT | 1 cut(s) | 276 |
| AluI | AGCT | 1 cut(s) | 276 |
| Alw21I | GWGCWC | 1 cut(s) | 527 |
| Alw26I | GTCTC | 3 cut(s) | 1033, 1188, 1207 |
| Alw44I | GTGCAC | 1 cut(s) | 523 |
| AlwI | GGATC | 3 cut(s) | 430, 1012, 1025 |
| Ama87I | CYCGRG | 1 cut(s) | 225 |
| AoxI | GGCC | 9 cut(s) | 14, 30, 46, 118, 134, 150, 306, 807, 1079 |
| ApaI | GGGCCC | 2 cut(s) | 18, 122 |
| ApaLI | GTGCAC | 1 cut(s) | 523 |
| ApeKI | GCWGC | 4 cut(s) | 5, 109, 538, 701 |
| ApoI | RAATTY | 3 cut(s) | 54, 158, 290 |
| AseI | ATTAAT | 2 cut(s) | 186, 1137 |
| AspLEI | GCGC | 3 cut(s) | 25, 96, 129 |
| AspS9I | GGNCC | 8 cut(s) | 14, 15, 118, 119, 709, 742, 808, 1079 |
| AvaI | CYCGRG | 1 cut(s) | 225 |
| AvaII | GGWCC | 2 cut(s) | 709, 742 |
| BaeGI | GKGCMC | 3 cut(s) | 18, 122, 527 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 716, 749 |
| BalI | TGGCCA | 4 cut(s) | 32, 48, 136, 152 |
| BamHI | GGATCC | 1 cut(s) | 1017 |
| BanI | GGYRCC | 1 cut(s) | 283 |
| BanII | GRGCYC | 2 cut(s) | 18, 122 |
| BbsI | GAAGAC | 1 cut(s) | 590 |
| Bbv12I | GWGCWC | 1 cut(s) | 527 |
| BbvI | GCAGC | 4 cut(s) | 17, 121, 550, 713 |
| BccI | CCATC | 3 cut(s) | 38, 142, 303 |
| BciT130I | CCWGG | 1 cut(s) | 1110 |
| BciVI | GTATCC | 2 cut(s) | 717, 959 |
| BcoDI | GTCTC | 3 cut(s) | 1033, 1188, 1207 |
| BfaI | CTAG | 2 cut(s) | 414, 909 |
| BfuAI | ACCTGC | 1 cut(s) | 982 |
| BfuI | GTATCC | 2 cut(s) | 717, 959 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 815 |
| BisI | GCNGC | 6 cut(s) | 6, 26, 110, 130, 539, 702 |
| BlpI | GCTNAGC | 1 cut(s) | 819 |
| BlsI | GCNGC | 6 cut(s) | 7, 27, 111, 131, 540, 703 |
| BmcAI | AGTACT | 1 cut(s) | 884 |
| Bme1390I | CCNGG | 1 cut(s) | 1110 |
| Bme18I | GGWCC | 2 cut(s) | 709, 742 |
| BmeT110I | CYCGRG | 1 cut(s) | 225 |
| BmgT120I | GGNCC | 8 cut(s) | 14, 15, 118, 119, 709, 742, 808, 1079 |
| BmiI | GGNNCC | 7 cut(s) | 16, 17, 120, 121, 285, 743, 1019 |
| BmrFI | CCNGG | 1 cut(s) | 1110 |
| BmsI | GCATC | 3 cut(s) | 77, 181, 476 |
| BpiI | GAAGAC | 1 cut(s) | 590 |
| BpmI | CTGGAG | 1 cut(s) | 961 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 819 |
| BpuEI | CTTGAG | 1 cut(s) | 689 |
| BsaI | GGTCTC | 1 cut(s) | 1033 |
| BsaJI | CCNNGG | 2 cut(s) | 759, 1108 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 315 |
| Bse118I | RCCGGY | 1 cut(s) | 280 |
| Bse1I | ACTGG | 1 cut(s) | 1006 |
| BseBI | CCWGG | 1 cut(s) | 1110 |
| BseDI | CCNNGG | 2 cut(s) | 759, 1108 |
| BseGI | GGATG | 1 cut(s) | 1204 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 315 |
| BseMII | CTCAG | 3 cut(s) | 446, 962, 1028 |
| BseNI | ACTGG | 1 cut(s) | 1006 |
| BseRI | GAGGAG | 5 cut(s) | 76, 278, 281, 437, 988 |
| BseSI | GKGCMC | 3 cut(s) | 18, 122, 527 |
| BseXI | GCAGC | 4 cut(s) | 17, 121, 550, 713 |
| BsgI | GTGCAG | 1 cut(s) | 720 |
| Bsh1236I | CGCG | 3 cut(s) | 23, 94, 127 |
| BshFI | GGCC | 9 cut(s) | 16, 32, 48, 120, 136, 152, 308, 809, 1081 |
| BshNI | GGYRCC | 1 cut(s) | 283 |
| BsiHKAI | GWGCWC | 1 cut(s) | 527 |
| BsiHKCI | CYCGRG | 1 cut(s) | 225 |
| BsiSI | CCGG | 2 cut(s) | 281, 309 |
| BslFI | GGGAC | 2 cut(s) | 755, 1012 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 315 |
| BsmAI | GTCTC | 3 cut(s) | 1033, 1188, 1207 |
| BsmFI | GGGAC | 2 cut(s) | 755, 1012 |
| BsnI | GGCC | 9 cut(s) | 16, 32, 48, 120, 136, 152, 308, 809, 1081 |
| Bso31I | GGTCTC | 1 cut(s) | 1033 |
| BsoBI | CYCGRG | 1 cut(s) | 225 |
| Bsp120I | GGGCCC | 2 cut(s) | 14, 118 |
| Bsp1286I | GDGCHC | 3 cut(s) | 18, 122, 527 |
| Bsp143I | GATC | 3 cut(s) | 435, 1017, 1207 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 819 |
| BspACI | CCGC | 3 cut(s) | 26, 130, 234 |
| BspANI | GGCC | 9 cut(s) | 16, 32, 48, 120, 136, 152, 308, 809, 1081 |
| BspCNI | CTCAG | 3 cut(s) | 445, 963, 1029 |
| BspFNI | CGCG | 3 cut(s) | 23, 94, 127 |
| BspLI | GGNNCC | 7 cut(s) | 16, 17, 120, 121, 285, 743, 1019 |
| BspMI | ACCTGC | 1 cut(s) | 982 |
| BspPI | GGATC | 3 cut(s) | 430, 1012, 1025 |
| BspT107I | GGYRCC | 1 cut(s) | 283 |
| BspTNI | GGTCTC | 1 cut(s) | 1033 |
| BsrFI | RCCGGY | 1 cut(s) | 280 |
| BsrI | ACTGG | 1 cut(s) | 1006 |
| BssAI | RCCGGY | 1 cut(s) | 280 |
| BssECI | CCNNGG | 2 cut(s) | 759, 1108 |
| BssMI | GATC | 3 cut(s) | 435, 1017, 1207 |
| BssT1I | CCWWGG | 1 cut(s) | 759 |
| Bst2UI | CCWGG | 1 cut(s) | 1110 |
| Bst6I | CTCTTC | 2 cut(s) | 343, 1079 |
| BstC8I | GCNNGC | 6 cut(s) | 30, 134, 274, 278, 937, 1071 |
| BstDEI | CTNAG | 9 cut(s) | 432, 492, 692, 819, 879, 971, 1037, 1187, 1260 |
| BstF5I | GGATG | 1 cut(s) | 1204 |
| BstFNI | CGCG | 3 cut(s) | 23, 94, 127 |
| BstHHI | GCGC | 3 cut(s) | 25, 96, 129 |
| BstKTI | GATC | 3 cut(s) | 438, 1020, 1210 |
| BstMAI | GTCTC | 3 cut(s) | 1033, 1188, 1207 |
| BstMBI | GATC | 3 cut(s) | 435, 1017, 1207 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 22, 29, 126, 133, 815 |
| BstNI | CCWGG | 1 cut(s) | 1110 |
| BstNSI | RCATGY | 2 cut(s) | 939, 1073 |
| BstSCI | CCNGG | 1 cut(s) | 1108 |
| BstSLI | GKGCMC | 3 cut(s) | 18, 122, 527 |
| BstUI | CGCG | 3 cut(s) | 23, 94, 127 |
| BstV1I | GCAGC | 4 cut(s) | 17, 121, 550, 713 |
| BstV2I | GAAGAC | 1 cut(s) | 590 |
| BstX2I | RGATCY | 2 cut(s) | 435, 1017 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1029 |
| BstYI | RGATCY | 2 cut(s) | 435, 1017 |
| BsuI | GTATCC | 2 cut(s) | 717, 959 |
| BsuRI | GGCC | 9 cut(s) | 16, 32, 48, 120, 136, 152, 308, 809, 1081 |
| BtsCI | GGATG | 1 cut(s) | 1204 |
| BtsI | GCAGTG | 1 cut(s) | 214 |
| BtsIMutI | CAGTG | 1 cut(s) | 214 |
| BveI | ACCTGC | 1 cut(s) | 982 |
| Cac8I | GCNNGC | 6 cut(s) | 30, 134, 274, 278, 937, 1071 |
| CfoI | GCGC | 3 cut(s) | 25, 96, 129 |
| Cfr10I | RCCGGY | 1 cut(s) | 280 |
| Cfr13I | GGNCC | 8 cut(s) | 14, 15, 118, 119, 709, 742, 808, 1079 |
| Csp6I | GTAC | 1 cut(s) | 883 |
| CviAII | CATG | 5 cut(s) | 581, 775, 936, 953, 1070 |
| CviQI | GTAC | 1 cut(s) | 883 |
| DdeI | CTNAG | 9 cut(s) | 432, 492, 692, 819, 879, 971, 1037, 1187, 1260 |
| DpnI | GATC | 3 cut(s) | 437, 1019, 1209 |
| DpnII | GATC | 3 cut(s) | 435, 1017, 1207 |
| DraI | TTTAAA | 1 cut(s) | 657 |
| DraIII | CACNNNGTG | 1 cut(s) | 560 |
| EaeI | YGGCCR | 5 cut(s) | 30, 46, 134, 150, 306 |
| Eam1104I | CTCTTC | 2 cut(s) | 343, 1079 |
| EarI | CTCTTC | 2 cut(s) | 343, 1079 |
| Eco130I | CCWWGG | 1 cut(s) | 759 |
| Eco24I | GRGCYC | 2 cut(s) | 18, 122 |
| Eco31I | GGTCTC | 1 cut(s) | 1033 |
| Eco47I | GGWCC | 2 cut(s) | 709, 742 |
| Eco88I | CYCGRG | 1 cut(s) | 225 |
| EcoO109I | RGGNCCY | 3 cut(s) | 15, 119, 709 |
| EcoRI | GAATTC | 1 cut(s) | 290 |
| EcoRII | CCWGG | 1 cut(s) | 1108 |
| EcoT14I | CCWWGG | 1 cut(s) | 759 |
| EcoT38I | GRGCYC | 2 cut(s) | 18, 122 |
| ErhI | CCWWGG | 1 cut(s) | 759 |
| FaeI | CATG | 5 cut(s) | 584, 778, 939, 956, 1073 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 470, 502 |
| FaqI | GGGAC | 2 cut(s) | 755, 1012 |
| FatI | CATG | 5 cut(s) | 580, 774, 935, 952, 1069 |
| FauNDI | CATATG | 1 cut(s) | 892 |
| FblI | GTMKAC | 1 cut(s) | 754 |
| Fnu4HI | GCNGC | 6 cut(s) | 6, 26, 110, 130, 539, 702 |
| FokI | GGATG | 1 cut(s) | 1211 |
| FriOI | GRGCYC | 2 cut(s) | 18, 122 |
| Fsp4HI | GCNGC | 6 cut(s) | 6, 26, 110, 130, 539, 702 |
| FspBI | CTAG | 2 cut(s) | 414, 909 |
| GlaI | GCGC | 3 cut(s) | 24, 95, 128 |
| GluI | GCNGC | 6 cut(s) | 6, 26, 110, 130, 539, 702 |
| GsuI | CTGGAG | 1 cut(s) | 961 |
| HaeIII | GGCC | 9 cut(s) | 16, 32, 48, 120, 136, 152, 308, 809, 1081 |
| HapII | CCGG | 2 cut(s) | 281, 309 |
| HhaI | GCGC | 3 cut(s) | 25, 96, 129 |
| Hin1II | CATG | 5 cut(s) | 584, 778, 939, 956, 1073 |
| Hin6I | GCGC | 3 cut(s) | 23, 94, 127 |
| HinP1I | GCGC | 3 cut(s) | 23, 94, 127 |
| HinfI | GANTC | 4 cut(s) | 202, 551, 1033, 1123 |
| HpaII | CCGG | 2 cut(s) | 281, 309 |
| Hpy166II | GTNNAC | 3 cut(s) | 484, 525, 755 |
| Hpy188I | TCNGA | 9 cut(s) | 43, 147, 327, 435, 477, 972, 1038, 1096, 1207 |
| Hpy188III | TCNNGA | 2 cut(s) | 225, 785 |
| Hpy8I | GTNNAC | 3 cut(s) | 484, 525, 755 |
| HpyAV | CCTTC | 7 cut(s) | 308, 365, 407, 472, 700, 722, 1053 |
| HpyCH4V | TGCA | 7 cut(s) | 219, 525, 548, 701, 797, 935, 1009 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 22, 29, 126, 133, 815 |
| HpyF3I | CTNAG | 9 cut(s) | 432, 492, 692, 819, 879, 971, 1037, 1187, 1260 |
| Hsp92II | CATG | 5 cut(s) | 584, 778, 939, 956, 1073 |
| HspAI | GCGC | 3 cut(s) | 23, 94, 127 |
| Kzo9I | GATC | 3 cut(s) | 435, 1017, 1207 |
| LmnI | GCTCC | 1 cut(s) | 89 |
| Lsp1109I | GCAGC | 4 cut(s) | 17, 121, 550, 713 |
| LweI | GCATC | 3 cut(s) | 77, 181, 476 |
| MaeI | CTAG | 2 cut(s) | 414, 909 |
| MaeIII | GTNAC | 3 cut(s) | 254, 687, 1101 |
| MalI | GATC | 3 cut(s) | 437, 1019, 1209 |
| MboI | GATC | 3 cut(s) | 435, 1017, 1207 |
| MfeI | CAATTG | 1 cut(s) | 866 |
| MflI | RGATCY | 2 cut(s) | 435, 1017 |
| MhlI | GDGCHC | 3 cut(s) | 18, 122, 527 |
| MlsI | TGGCCA | 4 cut(s) | 32, 48, 136, 152 |
| MluCI | AATT | 6 cut(s) | 54, 158, 187, 290, 802, 866 |
| MluNI | TGGCCA | 4 cut(s) | 32, 48, 136, 152 |
| MlyI | GAGTC | 1 cut(s) | 545 |
| MmeI | TCCRAC | 2 cut(s) | 432, 809 |
| Mox20I | TGGCCA | 4 cut(s) | 32, 48, 136, 152 |
| MscI | TGGCCA | 4 cut(s) | 32, 48, 136, 152 |
| MseI | TTAA | 3 cut(s) | 186, 656, 1137 |
| MslI | CAYNNNNRTG | 3 cut(s) | 252, 1074, 1197 |
| Msp20I | TGGCCA | 4 cut(s) | 32, 48, 136, 152 |
| MspA1I | CMGCKG | 2 cut(s) | 28, 132 |
| MspI | CCGG | 2 cut(s) | 281, 309 |
| MspR9I | CCNGG | 1 cut(s) | 1110 |
| MunI | CAATTG | 1 cut(s) | 866 |
| MvaI | CCWGG | 1 cut(s) | 1110 |
| MvnI | CGCG | 3 cut(s) | 23, 94, 127 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 22, 29, 126, 133, 815 |
| NdeI | CATATG | 1 cut(s) | 892 |
| NdeII | GATC | 3 cut(s) | 435, 1017, 1207 |
| NlaIII | CATG | 5 cut(s) | 584, 778, 939, 956, 1073 |
| NlaIV | GGNNCC | 7 cut(s) | 16, 17, 120, 121, 285, 743, 1019 |
| NmuCI | GTSAC | 1 cut(s) | 254 |
| NspI | RCATGY | 2 cut(s) | 939, 1073 |
| OliI | CACNNNNGTG | 1 cut(s) | 252 |
| PaeI | GCATGC | 2 cut(s) | 939, 1073 |
| PaqCI | CACCTGC | 1 cut(s) | 982 |
| PfeI | GAWTC | 3 cut(s) | 202, 1033, 1123 |
| PkrI | GCNGC | 6 cut(s) | 7, 27, 111, 131, 540, 703 |
| PleI | GAGTC | 1 cut(s) | 545 |
| PpsI | GAGTC | 1 cut(s) | 545 |
| PpuMI | RGGWCCY | 1 cut(s) | 709 |
| PshBI | ATTAAT | 2 cut(s) | 186, 1137 |
| Psp5II | RGGWCCY | 1 cut(s) | 709 |
| Psp6I | CCWGG | 1 cut(s) | 1108 |
| PspGI | CCWGG | 1 cut(s) | 1108 |
| PspN4I | GGNNCC | 7 cut(s) | 16, 17, 120, 121, 285, 743, 1019 |
| PspOMI | GGGCCC | 2 cut(s) | 14, 118 |
| PspPI | GGNCC | 8 cut(s) | 14, 15, 118, 119, 709, 742, 808, 1079 |
| PspPPI | RGGWCCY | 1 cut(s) | 709 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 835, 867 |
| PsuI | RGATCY | 2 cut(s) | 435, 1017 |
| RsaI | GTAC | 1 cut(s) | 884 |
| RsaNI | GTAC | 1 cut(s) | 883 |
| RseI | CAYNNNNRTG | 3 cut(s) | 252, 1074, 1197 |
| SaqAI | TTAA | 3 cut(s) | 186, 656, 1137 |
| SatI | GCNGC | 6 cut(s) | 6, 26, 110, 130, 539, 702 |
| Sau3AI | GATC | 3 cut(s) | 435, 1017, 1207 |
| Sau96I | GGNCC | 8 cut(s) | 14, 15, 118, 119, 709, 742, 808, 1079 |
| ScaI | AGTACT | 1 cut(s) | 884 |
| SchI | GAGTC | 1 cut(s) | 545 |
| ScrFI | CCNGG | 1 cut(s) | 1110 |
| SduI | GDGCHC | 3 cut(s) | 18, 122, 527 |
| SfaNI | GCATC | 3 cut(s) | 77, 181, 476 |
| SinI | GGWCC | 2 cut(s) | 709, 742 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 252, 1074, 1197 |
| SmlI | CTYRAG | 1 cut(s) | 668 |
| SmoI | CTYRAG | 1 cut(s) | 668 |
| SphI | GCATGC | 2 cut(s) | 939, 1073 |
| Sse9I | AATT | 6 cut(s) | 54, 158, 187, 290, 802, 866 |
| SsiI | CCGC | 3 cut(s) | 26, 130, 234 |
| SspI | AATATT | 2 cut(s) | 502, 1145 |
| SspMI | CTAG | 2 cut(s) | 414, 909 |
| StyD4I | CCNGG | 1 cut(s) | 1108 |
| StyI | CCWWGG | 1 cut(s) | 759 |
| TaqI | TCGA | 3 cut(s) | 200, 205, 784 |
| TaqII | GACCGA | 1 cut(s) | 360 |
| TasI | AATT | 6 cut(s) | 54, 158, 187, 290, 802, 866 |
| TatI | WGTACW | 1 cut(s) | 882 |
| TauI | GCSGC | 2 cut(s) | 28, 132 |
| TfiI | GAWTC | 3 cut(s) | 202, 1033, 1123 |
| Tru1I | TTAA | 3 cut(s) | 186, 656, 1137 |
| Tru9I | TTAA | 3 cut(s) | 186, 656, 1137 |
| TscAI | CASTG | 1 cut(s) | 221 |
| TseFI | GTSAC | 1 cut(s) | 254 |
| TseI | GCWGC | 4 cut(s) | 5, 109, 538, 701 |
| Tsp45I | GTSAC | 1 cut(s) | 254 |
| TspDTI | ATGAA | 3 cut(s) | 48, 152, 597 |
| TspGWI | ACGGA | 1 cut(s) | 1211 |
| TspRI | CASTG | 1 cut(s) | 221 |
| VneI | GTGCAC | 1 cut(s) | 523 |
| VpaK11BI | GGWCC | 2 cut(s) | 709, 742 |
| VspI | ATTAAT | 2 cut(s) | 186, 1137 |
| XapI | RAATTY | 3 cut(s) | 54, 158, 290 |
| XceI | RCATGY | 2 cut(s) | 939, 1073 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1116 |
| XmiI | GTMKAC | 1 cut(s) | 754 |
| XspI | CTAG | 2 cut(s) | 414, 909 |
| ZrmI | AGTACT | 1 cut(s) | 884 |