Reverse transcriptase-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 609 - 730 | 1.2e-23 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1842 |
| AccB1I | GGYRCC | 2 cut(s) | 734, 1746 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1757 |
| AccBSI | CCGCTC | 3 cut(s) | 193, 1018, 1938 |
| AccI | GTMKAC | 1 cut(s) | 2323 |
| AccII | CGCG | 2 cut(s) | 707, 1195 |
| AccIII | TCCGGA | 1 cut(s) | 2301 |
| AclWI | GGATC | 5 cut(s) | 128, 805, 928, 1232, 1308 |
| AcoI | YGGCCR | 1 cut(s) | 1444 |
| AcsI | RAATTY | 6 cut(s) | 1069, 1364, 1564, 2063, 2088, 2136 |
| AdeI | CACNNNGTG | 1 cut(s) | 1757 |
| AfaI | GTAC | 7 cut(s) | 164, 997, 1034, 1259, 1425, 1736, 1897 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1165, 1757, 1808 |
| AflII | CTTAAG | 1 cut(s) | 1817 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 201 |
| AjiI | CACGTC | 1 cut(s) | 481 |
| AjnI | CCWGG | 2 cut(s) | 302, 2311 |
| AluBI | AGCT | 8 cut(s) | 464, 1341, 1559, 1686, 1771, 1822, 1973, 1988 |
| AluI | AGCT | 8 cut(s) | 464, 1341, 1559, 1686, 1771, 1822, 1973, 1988 |
| Alw21I | GWGCWC | 2 cut(s) | 1546, 1596 |
| Alw26I | GTCTC | 6 cut(s) | 105, 609, 835, 1139, 1246, 1350 |
| Alw44I | GTGCAC | 1 cut(s) | 1592 |
| AlwI | GGATC | 5 cut(s) | 128, 805, 928, 1232, 1308 |
| Ama87I | CYCGRG | 1 cut(s) | 1460 |
| Aor13HI | TCCGGA | 1 cut(s) | 2301 |
| AoxI | GGCC | 7 cut(s) | 49, 236, 295, 1444, 1641, 2229, 2314 |
| ApaLI | GTGCAC | 1 cut(s) | 1592 |
| ApeKI | GCWGC | 2 cut(s) | 1771, 1907 |
| ApoI | RAATTY | 6 cut(s) | 1069, 1364, 1564, 2063, 2088, 2136 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 545, 577 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 89, 2067 |
| AspA2I | CCTAGG | 1 cut(s) | 1694 |
| AspLEI | GCGC | 1 cut(s) | 2185 |
| AspS9I | GGNCC | 9 cut(s) | 49, 184, 296, 377, 909, 1641, 2230, 2299, 2304 |
| AsuC2I | CCSGG | 1 cut(s) | 1855 |
| AsuHPI | GGTGA | 9 cut(s) | 134, 179, 266, 542, 592, 734, 1513, 1518, 2092 |
| AsuNHI | GCTAGC | 1 cut(s) | 1973 |
| AvaI | CYCGRG | 1 cut(s) | 1460 |
| AvaII | GGWCC | 5 cut(s) | 184, 377, 909, 2299, 2304 |
| AvrII | CCTAGG | 1 cut(s) | 1694 |
| BaeGI | GKGCMC | 1 cut(s) | 1596 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1887, 1920 |
| BalI | TGGCCA | 1 cut(s) | 1446 |
| BanI | GGYRCC | 2 cut(s) | 734, 1746 |
| BbsI | GAAGAC | 3 cut(s) | 197, 483, 723 |
| Bbv12I | GWGCWC | 2 cut(s) | 1546, 1596 |
| BbvI | GCAGC | 2 cut(s) | 1758, 1919 |
| BccI | CCATC | 5 cut(s) | 35, 313, 889, 1826, 2011 |
| BceAI | ACGGC | 1 cut(s) | 223 |
| BciT130I | CCWGG | 2 cut(s) | 304, 2313 |
| BciVI | GTATCC | 1 cut(s) | 1512 |
| BcnI | CCSGG | 1 cut(s) | 1855 |
| BcoDI | GTCTC | 6 cut(s) | 105, 609, 835, 1139, 1246, 1350 |
| BfaI | CTAG | 6 cut(s) | 1134, 1181, 1358, 1695, 1779, 1974 |
| BfrI | CTTAAG | 1 cut(s) | 1817 |
| BfuI | GTATCC | 1 cut(s) | 1512 |
| BglII | AGATCT | 1 cut(s) | 653 |
| BisI | GCNGC | 4 cut(s) | 605, 947, 1772, 1908 |
| BlnI | CCTAGG | 1 cut(s) | 1694 |
| BlsI | GCNGC | 4 cut(s) | 606, 948, 1773, 1909 |
| BmcAI | AGTACT | 1 cut(s) | 1034 |
| Bme1390I | CCNGG | 3 cut(s) | 304, 1855, 2313 |
| Bme18I | GGWCC | 5 cut(s) | 184, 377, 909, 2299, 2304 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 201 |
| BmeT110I | CYCGRG | 1 cut(s) | 1460 |
| BmgBI | CACGTC | 1 cut(s) | 481 |
| BmgT120I | GGNCC | 9 cut(s) | 49, 184, 296, 377, 909, 1641, 2230, 2299, 2304 |
| BmiI | GGNNCC | 9 cut(s) | 570, 736, 910, 1216, 1748, 1800, 2232, 2300, 2306 |
| BmrFI | CCNGG | 3 cut(s) | 304, 1855, 2313 |
| BmsI | GCATC | 1 cut(s) | 650 |
| BmtI | GCTAGC | 1 cut(s) | 1977 |
| BpiI | GAAGAC | 3 cut(s) | 197, 483, 723 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 1330, 1362, 2012, 2044, 2311, 2343 |
| BpmI | CTGGAG | 1 cut(s) | 1370 |
| BpuEI | CTTGAG | 1 cut(s) | 713 |
| BpuMI | CCSGG | 1 cut(s) | 1855 |
| Bsa29I | ATCGAT | 1 cut(s) | 1323 |
| BsaAI | YACGTR | 1 cut(s) | 359 |
| BsaI | GGTCTC | 1 cut(s) | 1350 |
| BsaJI | CCNNGG | 6 cut(s) | 239, 302, 311, 1241, 1694, 1996 |
| BsaWI | WCCGGW | 1 cut(s) | 2301 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 618, 648 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1165, 1757, 1808 |
| Bse1I | ACTGG | 3 cut(s) | 849, 1280, 1769 |
| Bse3DI | GCAATG | 1 cut(s) | 1713 |
| BseAI | TCCGGA | 1 cut(s) | 2301 |
| BseBI | CCWGG | 2 cut(s) | 304, 2313 |
| BseCI | ATCGAT | 1 cut(s) | 1323 |
| BseDI | CCNNGG | 6 cut(s) | 239, 302, 311, 1241, 1694, 1996 |
| BseGI | GGATG | 5 cut(s) | 529, 665, 881, 2254, 2388 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1165, 1757, 1808 |
| BseMI | GCAATG | 1 cut(s) | 1713 |
| BseMII | CTCAG | 3 cut(s) | 990, 2300, 2309 |
| BseNI | ACTGG | 3 cut(s) | 849, 1280, 1769 |
| BseRI | GAGGAG | 9 cut(s) | 80, 639, 642, 645, 698, 1486, 1667, 1791, 1899 |
| BseSI | GKGCMC | 1 cut(s) | 1596 |
| BseXI | GCAGC | 2 cut(s) | 1758, 1919 |
| Bsh1236I | CGCG | 2 cut(s) | 707, 1195 |
| Bsh1285I | CGRYCG | 1 cut(s) | 711 |
| BshFI | GGCC | 7 cut(s) | 51, 238, 297, 1446, 1643, 2231, 2316 |
| BshNI | GGYRCC | 2 cut(s) | 734, 1746 |
| BshVI | ATCGAT | 1 cut(s) | 1323 |
| BsiEI | CGRYCG | 1 cut(s) | 711 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1546, 1596 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1460 |
| BsiSI | CCGG | 2 cut(s) | 1854, 2302 |
| BslFI | GGGAC | 4 cut(s) | 702, 850, 863, 922 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1165, 1757, 1808 |
| BsmAI | GTCTC | 6 cut(s) | 105, 609, 835, 1139, 1246, 1350 |
| BsmBI | CGTCTC | 1 cut(s) | 609 |
| BsmFI | GGGAC | 4 cut(s) | 702, 850, 863, 922 |
| BsmI | GAATGC | 1 cut(s) | 1126 |
| BsnI | GGCC | 7 cut(s) | 51, 238, 297, 1446, 1643, 2231, 2316 |
| Bso31I | GGTCTC | 1 cut(s) | 1350 |
| BsoBI | CYCGRG | 1 cut(s) | 1460 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1546, 1596 |
| Bsp13I | TCCGGA | 1 cut(s) | 2301 |
| Bsp1407I | TGTACA | 1 cut(s) | 1257 |
| Bsp19I | CCATGG | 1 cut(s) | 1241 |
| BspANI | GGCC | 7 cut(s) | 51, 238, 297, 1446, 1643, 2231, 2316 |
| BspCNI | CTCAG | 3 cut(s) | 991, 2299, 2310 |
| BspDI | ATCGAT | 1 cut(s) | 1323 |
| BspEI | TCCGGA | 1 cut(s) | 2301 |
| BspFNI | CGCG | 2 cut(s) | 707, 1195 |
| BspHI | TCATGA | 1 cut(s) | 1161 |
| BspLI | GGNNCC | 9 cut(s) | 570, 736, 910, 1216, 1748, 1800, 2232, 2300, 2306 |
| BspOI | GCTAGC | 1 cut(s) | 1977 |
| BspPI | GGATC | 5 cut(s) | 128, 805, 928, 1232, 1308 |
| BspQI | GCTCTTC | 2 cut(s) | 1148, 1950 |
| BspT107I | GGYRCC | 2 cut(s) | 734, 1746 |
| BspTI | CTTAAG | 1 cut(s) | 1817 |
| BspTNI | GGTCTC | 1 cut(s) | 1350 |
| BsrBI | CCGCTC | 3 cut(s) | 193, 1018, 1938 |
| BsrDI | GCAATG | 1 cut(s) | 1713 |
| BsrGI | TGTACA | 1 cut(s) | 1257 |
| BsrI | ACTGG | 3 cut(s) | 849, 1280, 1769 |
| BssECI | CCNNGG | 6 cut(s) | 239, 302, 311, 1241, 1694, 1996 |
| BssNAI | GTATAC | 1 cut(s) | 2324 |
| BssT1I | CCWWGG | 3 cut(s) | 1241, 1694, 1996 |
| Bst1107I | GTATAC | 1 cut(s) | 2324 |
| Bst2UI | CCWGG | 2 cut(s) | 304, 2313 |
| Bst4CI | ACNGT | 6 cut(s) | 113, 167, 530, 722, 752, 1257 |
| Bst6I | CTCTTC | 8 cut(s) | 548, 777, 1097, 1148, 1374, 1605, 1950, 2261 |
| BstAFI | CTTAAG | 1 cut(s) | 1817 |
| BstAUI | TGTACA | 1 cut(s) | 1257 |
| BstBAI | YACGTR | 1 cut(s) | 359 |
| BstC8I | GCNNGC | 4 cut(s) | 1510, 1542, 1975, 1979 |
| BstDEI | CTNAG | 7 cut(s) | 272, 333, 999, 1754, 2286, 2318, 2392 |
| BstDSI | CCRYGG | 2 cut(s) | 239, 1241 |
| BstEII | GGTNACC | 1 cut(s) | 530 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1163 |
| BstF5I | GGATG | 5 cut(s) | 529, 665, 881, 2254, 2388 |
| BstFNI | CGCG | 2 cut(s) | 707, 1195 |
| BstHHI | GCGC | 1 cut(s) | 2185 |
| BstMAI | GTCTC | 6 cut(s) | 105, 609, 835, 1139, 1246, 1350 |
| BstMCI | CGRYCG | 1 cut(s) | 711 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 604, 1970 |
| BstNI | CCWGG | 2 cut(s) | 304, 2313 |
| BstNSI | RCATGY | 4 cut(s) | 1512, 1516, 1703, 1968 |
| BstPI | GGTNACC | 1 cut(s) | 530 |
| BstSCI | CCNGG | 3 cut(s) | 302, 1853, 2311 |
| BstSLI | GKGCMC | 1 cut(s) | 1596 |
| BstUI | CGCG | 2 cut(s) | 707, 1195 |
| BstV1I | GCAGC | 2 cut(s) | 1758, 1919 |
| BstV2I | GAAGAC | 3 cut(s) | 197, 483, 723 |
| BstX2I | RGATCY | 2 cut(s) | 653, 1300 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 144 |
| BstYI | RGATCY | 2 cut(s) | 653, 1300 |
| BstZ17I | GTATAC | 1 cut(s) | 2324 |
| Bsu15I | ATCGAT | 1 cut(s) | 1323 |
| BsuI | GTATCC | 1 cut(s) | 1512 |
| BsuRI | GGCC | 7 cut(s) | 51, 238, 297, 1446, 1643, 2231, 2316 |
| BsuTUI | ATCGAT | 1 cut(s) | 1323 |
| BtgI | CCRYGG | 2 cut(s) | 239, 1241 |
| BtrI | CACGTC | 1 cut(s) | 481 |
| BtsCI | GGATG | 5 cut(s) | 529, 665, 881, 2254, 2388 |
| BtsI | GCAGTG | 1 cut(s) | 2043 |
| BtsIMutI | CAGTG | 2 cut(s) | 1083, 2043 |
| Cac8I | GCNNGC | 4 cut(s) | 1510, 1542, 1975, 1979 |
| CciI | TCATGA | 1 cut(s) | 1161 |
| CfoI | GCGC | 1 cut(s) | 2185 |
| Cfr13I | GGNCC | 9 cut(s) | 49, 184, 296, 377, 909, 1641, 2230, 2299, 2304 |
| ClaI | ATCGAT | 1 cut(s) | 1323 |
| Csp6I | GTAC | 7 cut(s) | 163, 996, 1033, 1258, 1424, 1735, 1896 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2148, 2183 |
| CviQI | GTAC | 7 cut(s) | 163, 996, 1033, 1258, 1424, 1735, 1896 |
| DdeI | CTNAG | 7 cut(s) | 272, 333, 999, 1754, 2286, 2318, 2392 |
| DraI | TTTAAA | 1 cut(s) | 1267 |
| DraIII | CACNNNGTG | 1 cut(s) | 1757 |
| DriI | GACNNNNNGTC | 1 cut(s) | 201 |
| EaeI | YGGCCR | 1 cut(s) | 1444 |
| Eam1104I | CTCTTC | 8 cut(s) | 548, 777, 1097, 1148, 1374, 1605, 1950, 2261 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 201 |
| EarI | CTCTTC | 8 cut(s) | 548, 777, 1097, 1148, 1374, 1605, 1950, 2261 |
| EciI | GGCGGA | 1 cut(s) | 2319 |
| Eco130I | CCWWGG | 3 cut(s) | 1241, 1694, 1996 |
| Eco147I | AGGCCT | 1 cut(s) | 2316 |
| Eco31I | GGTCTC | 1 cut(s) | 1350 |
| Eco47I | GGWCC | 5 cut(s) | 184, 377, 909, 2299, 2304 |
| Eco88I | CYCGRG | 1 cut(s) | 1460 |
| Eco91I | GGTNACC | 1 cut(s) | 530 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1163 |
| EcoO109I | RGGNCCY | 2 cut(s) | 296, 2230 |
| EcoO65I | GGTNACC | 1 cut(s) | 530 |
| EcoRII | CCWGG | 2 cut(s) | 302, 2311 |
| EcoT14I | CCWWGG | 3 cut(s) | 1241, 1694, 1996 |
| EcoT22I | ATGCAT | 1 cut(s) | 1514 |
| ErhI | CCWWGG | 3 cut(s) | 1241, 1694, 1996 |
| Esp3I | CGTCTC | 1 cut(s) | 609 |
| FaqI | GGGAC | 4 cut(s) | 702, 850, 863, 922 |
| FauI | CCCGC | 1 cut(s) | 632 |
| FblI | GTMKAC | 1 cut(s) | 2323 |
| Fnu4HI | GCNGC | 4 cut(s) | 605, 947, 1772, 1908 |
| FokI | GGATG | 5 cut(s) | 536, 672, 868, 2261, 2395 |
| Fsp4HI | GCNGC | 4 cut(s) | 605, 947, 1772, 1908 |
| FspBI | CTAG | 6 cut(s) | 1134, 1181, 1358, 1695, 1779, 1974 |
| GlaI | GCGC | 1 cut(s) | 2184 |
| GluI | GCNGC | 4 cut(s) | 605, 947, 1772, 1908 |
| GsuI | CTGGAG | 1 cut(s) | 1370 |
| HaeIII | GGCC | 7 cut(s) | 51, 238, 297, 1446, 1643, 2231, 2316 |
| HapII | CCGG | 2 cut(s) | 1854, 2302 |
| HhaI | GCGC | 1 cut(s) | 2185 |
| Hin6I | GCGC | 1 cut(s) | 2183 |
| HinP1I | GCGC | 1 cut(s) | 2183 |
| HincII | GTYRAC | 2 cut(s) | 215, 2212 |
| HindII | GTYRAC | 2 cut(s) | 215, 2212 |
| HindIII | AAGCTT | 3 cut(s) | 462, 1557, 1684 |
| HinfI | GANTC | 9 cut(s) | 202, 633, 927, 955, 1331, 2027, 2083, 2113, 2264 |
| HpaII | CCGG | 2 cut(s) | 1854, 2302 |
| HphI | GGTGA | 9 cut(s) | 134, 179, 266, 542, 592, 734, 1513, 1518, 2092 |
| Hpy166II | GTNNAC | 8 cut(s) | 125, 170, 215, 996, 1260, 1594, 2212, 2324 |
| Hpy188I | TCNGA | 6 cut(s) | 312, 547, 573, 960, 1338, 2343 |
| Hpy8I | GTNNAC | 8 cut(s) | 125, 170, 215, 996, 1260, 1594, 2212, 2324 |
| Hpy99I | CGWCG | 2 cut(s) | 113, 668 |
| HpyCH4III | ACNGT | 6 cut(s) | 113, 167, 530, 722, 752, 1257 |
| HpyCH4IV | ACGT | 2 cut(s) | 358, 480 |
| HpyCH4V | TGCA | 8 cut(s) | 393, 1124, 1454, 1508, 1512, 1594, 1981, 2103 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 604, 1970 |
| HpyF3I | CTNAG | 7 cut(s) | 272, 333, 999, 1754, 2286, 2318, 2392 |
| HpySE526I | ACGT | 2 cut(s) | 358, 480 |
| HspAI | GCGC | 1 cut(s) | 2183 |
| Kpn2I | TCCGGA | 1 cut(s) | 2301 |
| LguI | GCTCTTC | 2 cut(s) | 1148, 1950 |
| LmnI | GCTCC | 2 cut(s) | 1338, 1804 |
| Lsp1109I | GCAGC | 2 cut(s) | 1758, 1919 |
| LweI | GCATC | 1 cut(s) | 650 |
| MaeI | CTAG | 6 cut(s) | 1134, 1181, 1358, 1695, 1779, 1974 |
| MaeII | ACGT | 2 cut(s) | 358, 480 |
| MaeIII | GTNAC | 7 cut(s) | 76, 260, 350, 530, 1105, 2024, 2041 |
| MbiI | CCGCTC | 3 cut(s) | 193, 1018, 1938 |
| MfeI | CAATTG | 1 cut(s) | 1530 |
| MflI | RGATCY | 2 cut(s) | 653, 1300 |
| MhlI | GDGCHC | 2 cut(s) | 1546, 1596 |
| MlsI | TGGCCA | 1 cut(s) | 1446 |
| MluNI | TGGCCA | 1 cut(s) | 1446 |
| MlyI | GAGTC | 4 cut(s) | 211, 642, 2021, 2092 |
| MmeI | TCCRAC | 4 cut(s) | 453, 1008, 1560, 1982 |
| Mox20I | TGGCCA | 1 cut(s) | 1446 |
| Mph1103I | ATGCAT | 1 cut(s) | 1514 |
| MroI | TCCGGA | 1 cut(s) | 2301 |
| MroXI | GAANNNNTTC | 2 cut(s) | 89, 2067 |
| MscI | TGGCCA | 1 cut(s) | 1446 |
| MseI | TTAA | 5 cut(s) | 963, 1185, 1266, 1689, 1818 |
| MslI | CAYNNNNRTG | 5 cut(s) | 142, 1513, 1551, 1789, 2108 |
| Msp20I | TGGCCA | 1 cut(s) | 1446 |
| MspCI | CTTAAG | 1 cut(s) | 1817 |
| MspI | CCGG | 2 cut(s) | 1854, 2302 |
| MspR9I | CCNGG | 3 cut(s) | 304, 1855, 2313 |
| MunI | CAATTG | 1 cut(s) | 1530 |
| Mva1269I | GAATGC | 1 cut(s) | 1126 |
| MvaI | CCWGG | 2 cut(s) | 304, 2313 |
| MvnI | CGCG | 2 cut(s) | 707, 1195 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 604, 1970 |
| NciI | CCSGG | 1 cut(s) | 1855 |
| NcoI | CCATGG | 1 cut(s) | 1241 |
| NheI | GCTAGC | 1 cut(s) | 1973 |
| NlaIV | GGNNCC | 9 cut(s) | 570, 736, 910, 1216, 1748, 1800, 2232, 2300, 2306 |
| NmeAIII | GCCGAG | 2 cut(s) | 1076, 1275 |
| NmuCI | GTSAC | 3 cut(s) | 530, 2024, 2041 |
| NsiI | ATGCAT | 1 cut(s) | 1514 |
| NspI | RCATGY | 4 cut(s) | 1512, 1516, 1703, 1968 |
| PaeI | GCATGC | 1 cut(s) | 1512 |
| PagI | TCATGA | 1 cut(s) | 1161 |
| PceI | AGGCCT | 1 cut(s) | 2316 |
| PciSI | GCTCTTC | 2 cut(s) | 1148, 1950 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 569 |
| PctI | GAATGC | 1 cut(s) | 1126 |
| PdmI | GAANNNNTTC | 2 cut(s) | 89, 2067 |
| PfeI | GAWTC | 5 cut(s) | 927, 955, 1331, 2113, 2264 |
| PflFI | GACNNNGTC | 1 cut(s) | 668 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1757 |
| PkrI | GCNGC | 4 cut(s) | 606, 948, 1773, 1909 |
| PleI | GAGTC | 4 cut(s) | 210, 641, 2021, 2091 |
| PpsI | GAGTC | 4 cut(s) | 210, 641, 2021, 2091 |
| Ppu21I | YACGTR | 1 cut(s) | 359 |
| PsiI | TTATAA | 1 cut(s) | 1842 |
| Psp6I | CCWGG | 2 cut(s) | 302, 2311 |
| PspEI | GGTNACC | 1 cut(s) | 530 |
| PspGI | CCWGG | 2 cut(s) | 302, 2311 |
| PspN4I | GGNNCC | 9 cut(s) | 570, 736, 910, 1216, 1748, 1800, 2232, 2300, 2306 |
| PspPI | GGNCC | 9 cut(s) | 49, 184, 296, 377, 909, 1641, 2230, 2299, 2304 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2263, 2295 |
| PsuI | RGATCY | 2 cut(s) | 653, 1300 |
| PsyI | GACNNNGTC | 1 cut(s) | 668 |
| RsaI | GTAC | 7 cut(s) | 164, 997, 1034, 1259, 1425, 1736, 1897 |
| RsaNI | GTAC | 7 cut(s) | 163, 996, 1033, 1258, 1424, 1735, 1896 |
| RseI | CAYNNNNRTG | 5 cut(s) | 142, 1513, 1551, 1789, 2108 |
| SapI | GCTCTTC | 2 cut(s) | 1148, 1950 |
| SaqAI | TTAA | 5 cut(s) | 963, 1185, 1266, 1689, 1818 |
| SatI | GCNGC | 4 cut(s) | 605, 947, 1772, 1908 |
| Sau96I | GGNCC | 9 cut(s) | 49, 184, 296, 377, 909, 1641, 2230, 2299, 2304 |
| ScaI | AGTACT | 1 cut(s) | 1034 |
| SchI | GAGTC | 4 cut(s) | 211, 642, 2021, 2092 |
| ScrFI | CCNGG | 3 cut(s) | 304, 1855, 2313 |
| SduI | GDGCHC | 2 cut(s) | 1546, 1596 |
| SfaNI | GCATC | 1 cut(s) | 650 |
| SinI | GGWCC | 5 cut(s) | 184, 377, 909, 2299, 2304 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 142, 1513, 1551, 1789, 2108 |
| SmlI | CTYRAG | 2 cut(s) | 692, 1817 |
| SmoI | CTYRAG | 2 cut(s) | 692, 1817 |
| SphI | GCATGC | 1 cut(s) | 1512 |
| SseBI | AGGCCT | 1 cut(s) | 2316 |
| SspMI | CTAG | 6 cut(s) | 1134, 1181, 1358, 1695, 1779, 1974 |
| StuI | AGGCCT | 1 cut(s) | 2316 |
| StyD4I | CCNGG | 3 cut(s) | 302, 1853, 2311 |
| StyI | CCWWGG | 3 cut(s) | 1241, 1694, 1996 |
| TaaI | ACNGT | 6 cut(s) | 113, 167, 530, 722, 752, 1257 |
| TaiI | ACGT | 2 cut(s) | 361, 483 |
| TaqII | GACCGA | 2 cut(s) | 201, 926 |
| TatI | WGTACW | 3 cut(s) | 995, 1032, 1257 |
| TauI | GCSGC | 2 cut(s) | 607, 949 |
| TfiI | GAWTC | 5 cut(s) | 927, 955, 1331, 2113, 2264 |
| Tru1I | TTAA | 5 cut(s) | 963, 1185, 1266, 1689, 1818 |
| Tru9I | TTAA | 5 cut(s) | 963, 1185, 1266, 1689, 1818 |
| TscAI | CASTG | 2 cut(s) | 1090, 2050 |
| TseFI | GTSAC | 3 cut(s) | 530, 2024, 2041 |
| TseI | GCWGC | 2 cut(s) | 1771, 1907 |
| Tsp45I | GTSAC | 3 cut(s) | 530, 2024, 2041 |
| TspGWI | ACGGA | 1 cut(s) | 369 |
| TspRI | CASTG | 2 cut(s) | 1090, 2050 |
| Tth111I | GACNNNGTC | 1 cut(s) | 668 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1757 |
| Vha464I | CTTAAG | 1 cut(s) | 1817 |
| VneI | GTGCAC | 1 cut(s) | 1592 |
| VpaK11BI | GGWCC | 5 cut(s) | 184, 377, 909, 2299, 2304 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1163 |
| XapI | RAATTY | 6 cut(s) | 1069, 1364, 1564, 2063, 2088, 2136 |
| XbaI | TCTAGA | 1 cut(s) | 1778 |
| XceI | RCATGY | 4 cut(s) | 1512, 1516, 1703, 1968 |
| XmaJI | CCTAGG | 1 cut(s) | 1694 |
| XmiI | GTMKAC | 1 cut(s) | 2323 |
| XmnI | GAANNNNTTC | 2 cut(s) | 89, 2067 |
| XspI | CTAG | 6 cut(s) | 1134, 1181, 1358, 1695, 1779, 1974 |
| ZrmI | AGTACT | 1 cut(s) | 1034 |
| Zsp2I | ATGCAT | 1 cut(s) | 1514 |