Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-FLZ | PF04570 | 79 - 122 | 8.9e-12 | zinc-finger of the FCS-type, C2-C2 |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 199 |
| Acc36I | ACCTGC | 1 cut(s) | 229 |
| AccB1I | GGYRCC | 1 cut(s) | 85 |
| AccII | CGCG | 4 cut(s) | 10, 113, 163, 230 |
| AclWI | GGATC | 3 cut(s) | 58, 277, 290 |
| AcoI | YGGCCR | 1 cut(s) | 179 |
| AcsI | RAATTY | 1 cut(s) | 351 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 47, 82, 105, 112 |
| AjnI | CCWGG | 1 cut(s) | 23 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 92, 124 |
| AluBI | AGCT | 3 cut(s) | 36, 45, 73 |
| AluI | AGCT | 3 cut(s) | 36, 45, 73 |
| Alw21I | GWGCWC | 1 cut(s) | 47 |
| AlwI | GGATC | 3 cut(s) | 58, 277, 290 |
| AoxI | GGCC | 2 cut(s) | 54, 179 |
| ApeKI | GCWGC | 1 cut(s) | 33 |
| ApoI | RAATTY | 1 cut(s) | 351 |
| AspLEI | GCGC | 2 cut(s) | 163, 238 |
| AspS9I | GGNCC | 1 cut(s) | 21 |
| AsuC2I | CCSGG | 1 cut(s) | 49 |
| AvaII | GGWCC | 1 cut(s) | 21 |
| BamHI | GGATCC | 1 cut(s) | 282 |
| BanI | GGYRCC | 1 cut(s) | 85 |
| BanII | GRGCYC | 2 cut(s) | 47, 228 |
| Bbv12I | GWGCWC | 1 cut(s) | 47 |
| BbvI | GCAGC | 1 cut(s) | 45 |
| BccI | CCATC | 2 cut(s) | 154, 413 |
| BceAI | ACGGC | 1 cut(s) | 427 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 309, 343 |
| BciT130I | CCWGG | 1 cut(s) | 25 |
| BclI | TGATCA | 1 cut(s) | 244 |
| BcnI | CCSGG | 1 cut(s) | 49 |
| BfaI | CTAG | 1 cut(s) | 396 |
| BfuAI | ACCTGC | 1 cut(s) | 229 |
| BisI | GCNGC | 4 cut(s) | 34, 114, 231, 234 |
| BlsI | GCNGC | 4 cut(s) | 35, 115, 232, 235 |
| Bme1390I | CCNGG | 2 cut(s) | 25, 49 |
| Bme18I | GGWCC | 1 cut(s) | 21 |
| BmgT120I | GGNCC | 1 cut(s) | 21 |
| BmiI | GGNNCC | 3 cut(s) | 87, 225, 284 |
| BmrFI | CCNGG | 2 cut(s) | 25, 49 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 271, 303 |
| BpuMI | CCSGG | 1 cut(s) | 49 |
| BsaJI | CCNNGG | 2 cut(s) | 48, 228 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 47, 82, 105, 112 |
| Bse118I | RCCGGY | 3 cut(s) | 56, 105, 181 |
| Bse3DI | GCAATG | 1 cut(s) | 430 |
| BseBI | CCWGG | 1 cut(s) | 25 |
| BseDI | CCNNGG | 2 cut(s) | 48, 228 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 47, 82, 105, 112 |
| BseMI | GCAATG | 1 cut(s) | 430 |
| BseRI | GAGGAG | 1 cut(s) | 170 |
| BseX3I | CGGCCG | 1 cut(s) | 179 |
| BseXI | GCAGC | 1 cut(s) | 45 |
| Bsh1236I | CGCG | 4 cut(s) | 10, 113, 163, 230 |
| Bsh1285I | CGRYCG | 1 cut(s) | 182 |
| BshFI | GGCC | 2 cut(s) | 56, 181 |
| BshNI | GGYRCC | 1 cut(s) | 85 |
| BsiEI | CGRYCG | 1 cut(s) | 182 |
| BsiHKAI | GWGCWC | 1 cut(s) | 47 |
| BsiSI | CCGG | 7 cut(s) | 48, 57, 89, 106, 152, 182, 206 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 47, 82, 105, 112 |
| BsmI | GAATGC | 2 cut(s) | 266, 320 |
| BsnI | GGCC | 2 cut(s) | 56, 181 |
| Bsp1286I | GDGCHC | 2 cut(s) | 47, 228 |
| Bsp143I | GATC | 4 cut(s) | 63, 169, 244, 282 |
| BspANI | GGCC | 2 cut(s) | 56, 181 |
| BspFNI | CGCG | 4 cut(s) | 10, 113, 163, 230 |
| BspHI | TCATGA | 1 cut(s) | 437 |
| BspLI | GGNNCC | 3 cut(s) | 87, 225, 284 |
| BspMI | ACCTGC | 1 cut(s) | 229 |
| BspPI | GGATC | 3 cut(s) | 58, 277, 290 |
| BspQI | GCTCTTC | 1 cut(s) | 413 |
| BspT107I | GGYRCC | 1 cut(s) | 85 |
| BsrDI | GCAATG | 1 cut(s) | 430 |
| BsrFI | RCCGGY | 3 cut(s) | 56, 105, 181 |
| BssAI | RCCGGY | 3 cut(s) | 56, 105, 181 |
| BssECI | CCNNGG | 2 cut(s) | 48, 228 |
| BssMI | GATC | 4 cut(s) | 63, 169, 244, 282 |
| Bst2UI | CCWGG | 1 cut(s) | 25 |
| Bst6I | CTCTTC | 2 cut(s) | 272, 413 |
| BstC8I | GCNNGC | 7 cut(s) | 12, 38, 58, 71, 183, 228, 378 |
| BstDSI | CCRYGG | 1 cut(s) | 228 |
| BstFNI | CGCG | 4 cut(s) | 10, 113, 163, 230 |
| BstHHI | GCGC | 2 cut(s) | 163, 238 |
| BstKTI | GATC | 4 cut(s) | 66, 172, 247, 285 |
| BstMBI | GATC | 4 cut(s) | 63, 169, 244, 282 |
| BstMCI | CGRYCG | 1 cut(s) | 182 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 16, 42, 66, 85, 182, 270, 377, 420 |
| BstNI | CCWGG | 1 cut(s) | 25 |
| BstSCI | CCNGG | 2 cut(s) | 23, 47 |
| BstUI | CGCG | 4 cut(s) | 10, 113, 163, 230 |
| BstV1I | GCAGC | 1 cut(s) | 45 |
| BstX2I | RGATCY | 1 cut(s) | 282 |
| BstYI | RGATCY | 1 cut(s) | 282 |
| BstZI | CGGCCG | 1 cut(s) | 179 |
| BsuRI | GGCC | 2 cut(s) | 56, 181 |
| BtgI | CCRYGG | 1 cut(s) | 228 |
| BtgZI | GCGATG | 1 cut(s) | 132 |
| BveI | ACCTGC | 1 cut(s) | 229 |
| Cac8I | GCNNGC | 7 cut(s) | 12, 38, 58, 71, 183, 228, 378 |
| CciI | TCATGA | 1 cut(s) | 437 |
| CfoI | GCGC | 2 cut(s) | 163, 238 |
| Cfr10I | RCCGGY | 3 cut(s) | 56, 105, 181 |
| Cfr13I | GGNCC | 1 cut(s) | 21 |
| Cfr42I | CCGCGG | 1 cut(s) | 231 |
| CviAII | CATG | 2 cut(s) | 173, 438 |
| CviJI | RGCY | 9 cut(s) | 36, 45, 56, 73, 116, 145, 181, 226, 435 |
| CviKI_1 | RGCY | 9 cut(s) | 36, 45, 56, 73, 116, 145, 181, 226, 435 |
| DpnI | GATC | 4 cut(s) | 65, 171, 246, 284 |
| DpnII | GATC | 4 cut(s) | 63, 169, 244, 282 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 199 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 199 |
| EaeI | YGGCCR | 1 cut(s) | 179 |
| EagI | CGGCCG | 1 cut(s) | 179 |
| Eam1104I | CTCTTC | 2 cut(s) | 272, 413 |
| EarI | CTCTTC | 2 cut(s) | 272, 413 |
| EciI | GGCGGA | 1 cut(s) | 56 |
| Ecl136II | GAGCTC | 1 cut(s) | 45 |
| EclXI | CGGCCG | 1 cut(s) | 179 |
| Eco24I | GRGCYC | 2 cut(s) | 47, 228 |
| Eco47I | GGWCC | 1 cut(s) | 21 |
| Eco52I | CGGCCG | 1 cut(s) | 179 |
| Eco53kI | GAGCTC | 1 cut(s) | 45 |
| EcoICRI | GAGCTC | 1 cut(s) | 45 |
| EcoRII | CCWGG | 1 cut(s) | 23 |
| EcoT38I | GRGCYC | 2 cut(s) | 47, 228 |
| FaeI | CATG | 2 cut(s) | 176, 441 |
| FaiI | YATR | 3 cut(s) | 174, 308, 439 |
| FatI | CATG | 2 cut(s) | 172, 437 |
| FauI | CCCGC | 3 cut(s) | 3, 84, 235 |
| FbaI | TGATCA | 1 cut(s) | 244 |
| Fnu4HI | GCNGC | 4 cut(s) | 34, 114, 231, 234 |
| FriOI | GRGCYC | 2 cut(s) | 47, 228 |
| Fsp4HI | GCNGC | 4 cut(s) | 34, 114, 231, 234 |
| FspBI | CTAG | 1 cut(s) | 396 |
| GlaI | GCGC | 2 cut(s) | 162, 237 |
| GluI | GCNGC | 4 cut(s) | 34, 114, 231, 234 |
| HaeIII | GGCC | 2 cut(s) | 56, 181 |
| HapII | CCGG | 7 cut(s) | 48, 57, 89, 106, 152, 182, 206 |
| HhaI | GCGC | 2 cut(s) | 163, 238 |
| Hin1II | CATG | 2 cut(s) | 176, 441 |
| Hin6I | GCGC | 2 cut(s) | 161, 236 |
| HinP1I | GCGC | 2 cut(s) | 161, 236 |
| HinfI | GANTC | 2 cut(s) | 187, 342 |
| HpaII | CCGG | 7 cut(s) | 48, 57, 89, 106, 152, 182, 206 |
| Hpy188I | TCNGA | 3 cut(s) | 122, 192, 331 |
| Hpy188III | TCNNGA | 1 cut(s) | 438 |
| Hpy99I | CGWCG | 2 cut(s) | 205, 260 |
| HpyAV | CCTTC | 1 cut(s) | 76 |
| HpyCH4IV | ACGT | 1 cut(s) | 194 |
| HpyCH4V | TGCA | 2 cut(s) | 33, 320 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 16, 42, 66, 85, 182, 270, 377, 420 |
| HpySE526I | ACGT | 1 cut(s) | 194 |
| Hsp92II | CATG | 2 cut(s) | 176, 441 |
| HspAI | GCGC | 2 cut(s) | 161, 236 |
| KroI | GCCGGC | 2 cut(s) | 56, 181 |
| KroNI | GCCGGC | 2 cut(s) | 58, 183 |
| Ksp22I | TGATCA | 1 cut(s) | 244 |
| KspI | CCGCGG | 1 cut(s) | 231 |
| Kzo9I | GATC | 4 cut(s) | 63, 169, 244, 282 |
| LguI | GCTCTTC | 1 cut(s) | 413 |
| LmnI | GCTCC | 5 cut(s) | 50, 78, 91, 223, 373 |
| Lsp1109I | GCAGC | 1 cut(s) | 45 |
| MaeI | CTAG | 1 cut(s) | 396 |
| MaeII | ACGT | 1 cut(s) | 194 |
| MalI | GATC | 4 cut(s) | 65, 171, 246, 284 |
| MboI | GATC | 4 cut(s) | 63, 169, 244, 282 |
| MboII | GAAGA | 2 cut(s) | 289, 430 |
| MfeI | CAATTG | 1 cut(s) | 100 |
| MflI | RGATCY | 1 cut(s) | 282 |
| MhlI | GDGCHC | 2 cut(s) | 47, 228 |
| MluCI | AATT | 2 cut(s) | 100, 351 |
| MnlI | CCTC | 6 cut(s) | 46, 148, 151, 263, 273, 297 |
| MroNI | GCCGGC | 2 cut(s) | 56, 181 |
| MseI | TTAA | 1 cut(s) | 387 |
| MspA1I | CMGCKG | 1 cut(s) | 230 |
| MspI | CCGG | 7 cut(s) | 48, 57, 89, 106, 152, 182, 206 |
| MspR9I | CCNGG | 2 cut(s) | 25, 49 |
| MunI | CAATTG | 1 cut(s) | 100 |
| Mva1269I | GAATGC | 2 cut(s) | 266, 320 |
| MvaI | CCWGG | 1 cut(s) | 25 |
| MvnI | CGCG | 4 cut(s) | 10, 113, 163, 230 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 16, 42, 66, 85, 182, 270, 377, 420 |
| NaeI | GCCGGC | 2 cut(s) | 58, 183 |
| NciI | CCSGG | 1 cut(s) | 49 |
| NdeII | GATC | 4 cut(s) | 63, 169, 244, 282 |
| NgoMIV | GCCGGC | 2 cut(s) | 56, 181 |
| NlaIII | CATG | 2 cut(s) | 176, 441 |
| NlaIV | GGNNCC | 3 cut(s) | 87, 225, 284 |
| NmeAIII | GCCGAG | 2 cut(s) | 66, 157 |
| PagI | TCATGA | 1 cut(s) | 437 |
| PciSI | GCTCTTC | 1 cut(s) | 413 |
| PctI | GAATGC | 2 cut(s) | 266, 320 |
| PdiI | GCCGGC | 2 cut(s) | 58, 183 |
| PfeI | GAWTC | 2 cut(s) | 187, 342 |
| PflFI | GACNNNGTC | 1 cut(s) | 196 |
| PkrI | GCNGC | 4 cut(s) | 35, 115, 232, 235 |
| Psp124BI | GAGCTC | 1 cut(s) | 47 |
| Psp6I | CCWGG | 1 cut(s) | 23 |
| PspGI | CCWGG | 1 cut(s) | 23 |
| PspN4I | GGNNCC | 3 cut(s) | 87, 225, 284 |
| PspPI | GGNCC | 1 cut(s) | 21 |
| PsuI | RGATCY | 1 cut(s) | 282 |
| PsyI | GACNNNGTC | 1 cut(s) | 196 |
| SacI | GAGCTC | 1 cut(s) | 47 |
| SacII | CCGCGG | 1 cut(s) | 231 |
| SapI | GCTCTTC | 1 cut(s) | 413 |
| SaqAI | TTAA | 1 cut(s) | 387 |
| SatI | GCNGC | 4 cut(s) | 34, 114, 231, 234 |
| Sau3AI | GATC | 4 cut(s) | 63, 169, 244, 282 |
| Sau96I | GGNCC | 1 cut(s) | 21 |
| ScrFI | CCNGG | 2 cut(s) | 25, 49 |
| SduI | GDGCHC | 2 cut(s) | 47, 228 |
| SetI | ASST | 7 cut(s) | 38, 47, 75, 87, 197, 243, 369 |
| Sfr303I | CCGCGG | 1 cut(s) | 231 |
| SgrBI | CCGCGG | 1 cut(s) | 231 |
| SinI | GGWCC | 1 cut(s) | 21 |
| Sse9I | AATT | 2 cut(s) | 100, 351 |
| SspMI | CTAG | 1 cut(s) | 396 |
| SstI | GAGCTC | 1 cut(s) | 47 |
| StyD4I | CCNGG | 2 cut(s) | 23, 47 |
| TaiI | ACGT | 1 cut(s) | 197 |
| TaqI | TCGA | 1 cut(s) | 255 |
| TasI | AATT | 2 cut(s) | 100, 351 |
| TauI | GCSGC | 3 cut(s) | 116, 233, 236 |
| TfiI | GAWTC | 2 cut(s) | 187, 342 |
| Tru1I | TTAA | 1 cut(s) | 387 |
| Tru9I | TTAA | 1 cut(s) | 387 |
| TseI | GCWGC | 1 cut(s) | 33 |
| TspDTI | ATGAA | 1 cut(s) | 295 |
| Tth111I | GACNNNGTC | 1 cut(s) | 196 |
| VpaK11BI | GGWCC | 1 cut(s) | 21 |
| XapI | RAATTY | 1 cut(s) | 351 |
| XspI | CTAG | 1 cut(s) | 396 |