Reverse transcriptase-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 179 - 231 | 6.8e-08 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 627 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 423 |
| AccII | CGCG | 1 cut(s) | 719 |
| AciI | CCGC | 2 cut(s) | 651, 719 |
| AclWI | GGATC | 2 cut(s) | 25, 212 |
| AcuI | CTGAAG | 1 cut(s) | 59 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 364, 423, 515 |
| AflIII | ACRYGT | 2 cut(s) | 28, 640 |
| AgsI | TTSAA | 1 cut(s) | 128 |
| AjnI | CCWGG | 1 cut(s) | 567 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 484, 516 |
| AluBI | AGCT | 5 cut(s) | 158, 254, 524, 548, 703 |
| AluI | AGCT | 5 cut(s) | 158, 254, 524, 548, 703 |
| Alw21I | GWGCWC | 1 cut(s) | 705 |
| Alw26I | GTCTC | 2 cut(s) | 396, 588 |
| AlwI | GGATC | 2 cut(s) | 25, 212 |
| AoxI | GGCC | 1 cut(s) | 453 |
| ApeKI | GCWGC | 3 cut(s) | 167, 413, 473 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 137 |
| AspLEI | GCGC | 1 cut(s) | 628 |
| AspS9I | GGNCC | 1 cut(s) | 454 |
| AsuHPI | GGTGA | 2 cut(s) | 704, 742 |
| AsuII | TTCGAA | 1 cut(s) | 775 |
| BaeGI | GKGCMC | 1 cut(s) | 244 |
| BanII | GRGCYC | 2 cut(s) | 705, 825 |
| Bbv12I | GWGCWC | 1 cut(s) | 705 |
| BbvI | GCAGC | 3 cut(s) | 154, 425, 460 |
| BccI | CCATC | 2 cut(s) | 405, 536 |
| BciT130I | CCWGG | 1 cut(s) | 569 |
| BcoDI | GTCTC | 2 cut(s) | 396, 588 |
| BfaI | CTAG | 2 cut(s) | 171, 746 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 452 |
| BisI | GCNGC | 3 cut(s) | 168, 414, 474 |
| BlsI | GCNGC | 3 cut(s) | 169, 415, 475 |
| Bme1390I | CCNGG | 1 cut(s) | 569 |
| BmgT120I | GGNCC | 1 cut(s) | 454 |
| BmrFI | CCNGG | 1 cut(s) | 569 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 537, 569 |
| BpmI | CTGGAG | 1 cut(s) | 234 |
| Bpu14I | TTCGAA | 1 cut(s) | 775 |
| BpuEI | CTTGAG | 2 cut(s) | 87, 585 |
| Bsa29I | ATCGAT | 1 cut(s) | 761 |
| BsaJI | CCNNGG | 3 cut(s) | 417, 468, 568 |
| BsaWI | WCCGGW | 1 cut(s) | 357 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 289, 319 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 364, 423, 515 |
| Bse1I | ACTGG | 1 cut(s) | 288 |
| Bse3DI | GCAATG | 1 cut(s) | 408 |
| BseBI | CCWGG | 1 cut(s) | 569 |
| BseCI | ATCGAT | 1 cut(s) | 761 |
| BseDI | CCNNGG | 3 cut(s) | 417, 468, 568 |
| BseGI | GGATG | 2 cut(s) | 464, 547 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 364, 423, 515 |
| BseMI | GCAATG | 1 cut(s) | 408 |
| BseMII | CTCAG | 2 cut(s) | 100, 654 |
| BseNI | ACTGG | 1 cut(s) | 288 |
| BseSI | GKGCMC | 1 cut(s) | 244 |
| BseXI | GCAGC | 3 cut(s) | 154, 425, 460 |
| Bsh1236I | CGCG | 1 cut(s) | 719 |
| BshFI | GGCC | 1 cut(s) | 455 |
| BshVI | ATCGAT | 1 cut(s) | 761 |
| BsiHKAI | GWGCWC | 1 cut(s) | 705 |
| BsiSI | CCGG | 1 cut(s) | 358 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 364, 423, 515 |
| BsmAI | GTCTC | 2 cut(s) | 396, 588 |
| BsnI | GGCC | 1 cut(s) | 455 |
| Bsp119I | TTCGAA | 1 cut(s) | 775 |
| Bsp1286I | GDGCHC | 3 cut(s) | 244, 705, 825 |
| Bsp143I | GATC | 2 cut(s) | 17, 217 |
| Bsp19I | CCATGG | 1 cut(s) | 417 |
| BspACI | CCGC | 2 cut(s) | 651, 719 |
| BspANI | GGCC | 1 cut(s) | 455 |
| BspCNI | CTCAG | 2 cut(s) | 99, 655 |
| BspDI | ATCGAT | 1 cut(s) | 761 |
| BspFNI | CGCG | 1 cut(s) | 719 |
| BspPI | GGATC | 2 cut(s) | 25, 212 |
| BspT104I | TTCGAA | 1 cut(s) | 775 |
| BsrDI | GCAATG | 1 cut(s) | 408 |
| BsrI | ACTGG | 1 cut(s) | 288 |
| BssECI | CCNNGG | 3 cut(s) | 417, 468, 568 |
| BssMI | GATC | 2 cut(s) | 17, 217 |
| BssT1I | CCWWGG | 1 cut(s) | 417 |
| Bst2UI | CCWGG | 1 cut(s) | 569 |
| Bst4CI | ACNGT | 1 cut(s) | 772 |
| BstBI | TTCGAA | 1 cut(s) | 775 |
| BstC8I | GCNNGC | 5 cut(s) | 39, 43, 619, 721, 782 |
| BstDEI | CTNAG | 2 cut(s) | 86, 663 |
| BstDSI | CCRYGG | 1 cut(s) | 417 |
| BstF5I | GGATG | 2 cut(s) | 464, 547 |
| BstFNI | CGCG | 1 cut(s) | 719 |
| BstHHI | GCGC | 1 cut(s) | 628 |
| BstKTI | GATC | 2 cut(s) | 20, 220 |
| BstMAI | GTCTC | 2 cut(s) | 396, 588 |
| BstMBI | GATC | 2 cut(s) | 17, 217 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 164, 452, 623, 659 |
| BstNI | CCWGG | 1 cut(s) | 569 |
| BstNSI | RCATGY | 3 cut(s) | 32, 41, 644 |
| BstSCI | CCNGG | 1 cut(s) | 567 |
| BstSLI | GKGCMC | 1 cut(s) | 244 |
| BstUI | CGCG | 1 cut(s) | 719 |
| BstV1I | GCAGC | 3 cut(s) | 154, 425, 460 |
| BstX2I | RGATCY | 1 cut(s) | 217 |
| BstYI | RGATCY | 1 cut(s) | 217 |
| Bsu15I | ATCGAT | 1 cut(s) | 761 |
| BsuRI | GGCC | 1 cut(s) | 455 |
| BsuTUI | ATCGAT | 1 cut(s) | 761 |
| BtgI | CCRYGG | 1 cut(s) | 417 |
| BtsCI | GGATG | 2 cut(s) | 464, 547 |
| BtsIMutI | CAGTG | 1 cut(s) | 768 |
| Cac8I | GCNNGC | 5 cut(s) | 39, 43, 619, 721, 782 |
| CfoI | GCGC | 1 cut(s) | 628 |
| Cfr13I | GGNCC | 1 cut(s) | 454 |
| ClaI | ATCGAT | 1 cut(s) | 761 |
| CviAII | CATG | 5 cut(s) | 29, 38, 418, 641, 659 |
| DdeI | CTNAG | 2 cut(s) | 86, 663 |
| DpnI | GATC | 2 cut(s) | 19, 219 |
| DpnII | GATC | 2 cut(s) | 17, 217 |
| EciI | GGCGGA | 1 cut(s) | 640 |
| Ecl136II | GAGCTC | 1 cut(s) | 703 |
| Eco130I | CCWWGG | 1 cut(s) | 417 |
| Eco24I | GRGCYC | 2 cut(s) | 705, 825 |
| Eco32I | GATATC | 1 cut(s) | 178 |
| Eco53kI | GAGCTC | 1 cut(s) | 703 |
| Eco57I | CTGAAG | 1 cut(s) | 59 |
| EcoICRI | GAGCTC | 1 cut(s) | 703 |
| EcoRII | CCWGG | 1 cut(s) | 567 |
| EcoRV | GATATC | 1 cut(s) | 178 |
| EcoT14I | CCWWGG | 1 cut(s) | 417 |
| EcoT38I | GRGCYC | 2 cut(s) | 705, 825 |
| ErhI | CCWWGG | 1 cut(s) | 417 |
| FaeI | CATG | 5 cut(s) | 32, 41, 421, 644, 662 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 96, 128 |
| FatI | CATG | 5 cut(s) | 28, 37, 417, 640, 658 |
| FauI | CCCGC | 1 cut(s) | 712 |
| Fnu4HI | GCNGC | 3 cut(s) | 168, 414, 474 |
| FokI | GGATG | 2 cut(s) | 451, 554 |
| FriOI | GRGCYC | 2 cut(s) | 705, 825 |
| Fsp4HI | GCNGC | 3 cut(s) | 168, 414, 474 |
| FspBI | CTAG | 2 cut(s) | 171, 746 |
| FspI | TGCGCA | 1 cut(s) | 627 |
| GlaI | GCGC | 1 cut(s) | 627 |
| GluI | GCNGC | 3 cut(s) | 168, 414, 474 |
| GsuI | CTGGAG | 1 cut(s) | 234 |
| HaeIII | GGCC | 1 cut(s) | 455 |
| HapII | CCGG | 1 cut(s) | 358 |
| HhaI | GCGC | 1 cut(s) | 628 |
| Hin1II | CATG | 5 cut(s) | 32, 41, 421, 644, 662 |
| Hin6I | GCGC | 1 cut(s) | 626 |
| HinP1I | GCGC | 1 cut(s) | 626 |
| HincII | GTYRAC | 1 cut(s) | 691 |
| HindII | GTYRAC | 1 cut(s) | 691 |
| HinfI | GANTC | 4 cut(s) | 79, 596, 758, 811 |
| HpaII | CCGG | 1 cut(s) | 358 |
| HphI | GGTGA | 2 cut(s) | 704, 742 |
| Hpy166II | GTNNAC | 1 cut(s) | 691 |
| Hpy188I | TCNGA | 2 cut(s) | 78, 827 |
| Hpy188III | TCNNGA | 3 cut(s) | 104, 593, 815 |
| Hpy8I | GTNNAC | 1 cut(s) | 691 |
| HpyAV | CCTTC | 2 cut(s) | 6, 486 |
| HpyCH4III | ACNGT | 1 cut(s) | 772 |
| HpyCH4V | TGCA | 3 cut(s) | 37, 62, 413 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 164, 452, 623, 659 |
| HpyF3I | CTNAG | 2 cut(s) | 86, 663 |
| Hsp92II | CATG | 5 cut(s) | 32, 41, 421, 644, 662 |
| HspAI | GCGC | 1 cut(s) | 626 |
| Kzo9I | GATC | 2 cut(s) | 17, 217 |
| LmnI | GCTCC | 1 cut(s) | 545 |
| Lsp1109I | GCAGC | 3 cut(s) | 154, 425, 460 |
| MaeI | CTAG | 2 cut(s) | 171, 746 |
| MaeIII | GTNAC | 6 cut(s) | 279, 295, 333, 710, 748, 788 |
| MalI | GATC | 2 cut(s) | 19, 219 |
| MboI | GATC | 2 cut(s) | 17, 217 |
| MboII | GAAGA | 2 cut(s) | 65, 105 |
| MfeI | CAATTG | 1 cut(s) | 793 |
| MflI | RGATCY | 1 cut(s) | 217 |
| MhlI | GDGCHC | 3 cut(s) | 244, 705, 825 |
| MluCI | AATT | 3 cut(s) | 402, 728, 793 |
| MlyI | GAGTC | 2 cut(s) | 590, 820 |
| MmeI | TCCRAC | 1 cut(s) | 648 |
| MroXI | GAANNNNTTC | 1 cut(s) | 137 |
| MseI | TTAA | 1 cut(s) | 534 |
| MspI | CCGG | 1 cut(s) | 358 |
| MspR9I | CCNGG | 1 cut(s) | 569 |
| MunI | CAATTG | 1 cut(s) | 793 |
| MvaI | CCWGG | 1 cut(s) | 569 |
| MvnI | CGCG | 1 cut(s) | 719 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 164, 452, 623, 659 |
| NcoI | CCATGG | 1 cut(s) | 417 |
| NdeII | GATC | 2 cut(s) | 17, 217 |
| NlaIII | CATG | 5 cut(s) | 32, 41, 421, 644, 662 |
| NmeAIII | GCCGAG | 1 cut(s) | 449 |
| NmuCI | GTSAC | 2 cut(s) | 710, 748 |
| NsbI | TGCGCA | 1 cut(s) | 627 |
| NspI | RCATGY | 3 cut(s) | 32, 41, 644 |
| NspV | TTCGAA | 1 cut(s) | 775 |
| PaeI | GCATGC | 1 cut(s) | 41 |
| PciI | ACATGT | 2 cut(s) | 28, 640 |
| PdmI | GAANNNNTTC | 1 cut(s) | 137 |
| PfeI | GAWTC | 2 cut(s) | 79, 758 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 423 |
| PkrI | GCNGC | 3 cut(s) | 169, 415, 475 |
| PleI | GAGTC | 2 cut(s) | 590, 819 |
| PpsI | GAGTC | 2 cut(s) | 590, 819 |
| PscI | ACATGT | 2 cut(s) | 28, 640 |
| Psp124BI | GAGCTC | 1 cut(s) | 705 |
| Psp6I | CCWGG | 1 cut(s) | 567 |
| PspGI | CCWGG | 1 cut(s) | 567 |
| PspPI | GGNCC | 1 cut(s) | 454 |
| PsuI | RGATCY | 1 cut(s) | 217 |
| SacI | GAGCTC | 1 cut(s) | 705 |
| SaqAI | TTAA | 1 cut(s) | 534 |
| SatI | GCNGC | 3 cut(s) | 168, 414, 474 |
| Sau3AI | GATC | 2 cut(s) | 17, 217 |
| Sau96I | GGNCC | 1 cut(s) | 454 |
| SchI | GAGTC | 2 cut(s) | 590, 820 |
| ScrFI | CCNGG | 1 cut(s) | 569 |
| SduI | GDGCHC | 3 cut(s) | 244, 705, 825 |
| SfuI | TTCGAA | 1 cut(s) | 775 |
| SmlI | CTYRAG | 2 cut(s) | 102, 600 |
| SmoI | CTYRAG | 2 cut(s) | 102, 600 |
| SphI | GCATGC | 1 cut(s) | 41 |
| Sse9I | AATT | 3 cut(s) | 402, 728, 793 |
| SsiI | CCGC | 2 cut(s) | 651, 719 |
| SspI | AATATT | 2 cut(s) | 196, 437 |
| SspMI | CTAG | 2 cut(s) | 171, 746 |
| SstI | GAGCTC | 1 cut(s) | 705 |
| StyD4I | CCNGG | 1 cut(s) | 567 |
| StyI | CCWWGG | 1 cut(s) | 417 |
| TaaI | ACNGT | 1 cut(s) | 772 |
| TaqI | TCGA | 4 cut(s) | 20, 592, 761, 775 |
| TasI | AATT | 3 cut(s) | 402, 728, 793 |
| TfiI | GAWTC | 2 cut(s) | 79, 758 |
| Tru1I | TTAA | 1 cut(s) | 534 |
| Tru9I | TTAA | 1 cut(s) | 534 |
| TscAI | CASTG | 1 cut(s) | 775 |
| TseFI | GTSAC | 2 cut(s) | 710, 748 |
| TseI | GCWGC | 3 cut(s) | 167, 413, 473 |
| Tsp45I | GTSAC | 2 cut(s) | 710, 748 |
| TspGWI | ACGGA | 1 cut(s) | 145 |
| TspRI | CASTG | 1 cut(s) | 775 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 423 |
| XceI | RCATGY | 3 cut(s) | 32, 41, 644 |
| XmnI | GAANNNNTTC | 1 cut(s) | 137 |
| XspI | CTAG | 2 cut(s) | 171, 746 |