Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 414 |
| AciI | CCGC | 1 cut(s) | 359 |
| AclWI | GGATC | 2 cut(s) | 220, 233 |
| AfaI | GTAC | 2 cut(s) | 62, 252 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 414 |
| AflIII | ACRYGT | 1 cut(s) | 539 |
| AgeI | ACCGGT | 1 cut(s) | 785 |
| AgsI | TTSAA | 4 cut(s) | 176, 566, 617, 752 |
| AjnI | CCWGG | 1 cut(s) | 128 |
| AluBI | AGCT | 2 cut(s) | 68, 721 |
| AluI | AGCT | 2 cut(s) | 68, 721 |
| Alw21I | GWGCWC | 1 cut(s) | 274 |
| Alw26I | GTCTC | 1 cut(s) | 647 |
| AlwI | GGATC | 2 cut(s) | 220, 233 |
| ApeKI | GCWGC | 2 cut(s) | 434, 518 |
| AsiGI | ACCGGT | 1 cut(s) | 785 |
| AspLEI | GCGC | 1 cut(s) | 523 |
| AspS9I | GGNCC | 1 cut(s) | 361 |
| AsuC2I | CCSGG | 1 cut(s) | 230 |
| AsuHPI | GGTGA | 1 cut(s) | 268 |
| AvaII | GGWCC | 1 cut(s) | 361 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 267, 300 |
| BamHI | GGATCC | 1 cut(s) | 225 |
| Bbv12I | GWGCWC | 1 cut(s) | 274 |
| BbvI | GCAGC | 2 cut(s) | 421, 505 |
| BccI | CCATC | 4 cut(s) | 84, 293, 391, 458 |
| BceAI | ACGGC | 1 cut(s) | 71 |
| BciT130I | CCWGG | 1 cut(s) | 130 |
| BcnI | CCSGG | 1 cut(s) | 230 |
| BcoDI | GTCTC | 1 cut(s) | 647 |
| BfaI | CTAG | 2 cut(s) | 248, 681 |
| BisI | GCNGC | 2 cut(s) | 435, 519 |
| BlsI | GCNGC | 2 cut(s) | 436, 520 |
| Bme1390I | CCNGG | 2 cut(s) | 130, 230 |
| Bme18I | GGWCC | 1 cut(s) | 361 |
| BmgT120I | GGNCC | 1 cut(s) | 361 |
| BmiI | GGNNCC | 3 cut(s) | 117, 227, 304 |
| BmrFI | CCNGG | 2 cut(s) | 130, 230 |
| BmsI | GCATC | 2 cut(s) | 427, 536 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 104, 136 |
| BpmI | CTGGAG | 2 cut(s) | 40, 151 |
| BpuMI | CCSGG | 1 cut(s) | 230 |
| BsaAI | YACGTR | 1 cut(s) | 515 |
| BsaJI | CCNNGG | 1 cut(s) | 737 |
| BsaWI | WCCGGW | 1 cut(s) | 785 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 489, 519 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 414 |
| Bse118I | RCCGGY | 1 cut(s) | 785 |
| Bse3DI | GCAATG | 1 cut(s) | 320 |
| BseBI | CCWGG | 1 cut(s) | 130 |
| BseDI | CCNNGG | 1 cut(s) | 737 |
| BseGI | GGATG | 4 cut(s) | 76, 402, 418, 527 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 414 |
| BseMI | GCAATG | 1 cut(s) | 320 |
| BseMII | CTCAG | 1 cut(s) | 254 |
| BseRI | GAGGAG | 3 cut(s) | 113, 148, 713 |
| BseXI | GCAGC | 2 cut(s) | 421, 505 |
| BshTI | ACCGGT | 1 cut(s) | 785 |
| BsiHKAI | GWGCWC | 1 cut(s) | 274 |
| BsiSI | CCGG | 2 cut(s) | 230, 786 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 414 |
| BsmAI | GTCTC | 1 cut(s) | 647 |
| Bsp1286I | GDGCHC | 1 cut(s) | 274 |
| Bsp1407I | TGTACA | 1 cut(s) | 60 |
| Bsp143I | GATC | 1 cut(s) | 225 |
| BspACI | CCGC | 1 cut(s) | 359 |
| BspCNI | CTCAG | 1 cut(s) | 253 |
| BspLI | GGNNCC | 3 cut(s) | 117, 227, 304 |
| BspPI | GGATC | 2 cut(s) | 220, 233 |
| BsrDI | GCAATG | 1 cut(s) | 320 |
| BsrFI | RCCGGY | 1 cut(s) | 785 |
| BsrGI | TGTACA | 1 cut(s) | 60 |
| BssAI | RCCGGY | 1 cut(s) | 785 |
| BssECI | CCNNGG | 1 cut(s) | 737 |
| BssMI | GATC | 1 cut(s) | 225 |
| BssT1I | CCWWGG | 1 cut(s) | 737 |
| Bst2UI | CCWGG | 1 cut(s) | 130 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 269 |
| BstAUI | TGTACA | 1 cut(s) | 60 |
| BstBAI | YACGTR | 1 cut(s) | 515 |
| BstC8I | GCNNGC | 2 cut(s) | 377, 525 |
| BstDEI | CTNAG | 2 cut(s) | 240, 383 |
| BstF5I | GGATG | 4 cut(s) | 76, 402, 418, 527 |
| BstHHI | GCGC | 1 cut(s) | 523 |
| BstKTI | GATC | 1 cut(s) | 228 |
| BstMAI | GTCTC | 1 cut(s) | 647 |
| BstMBI | GATC | 1 cut(s) | 225 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 269, 356, 524 |
| BstNI | CCWGG | 1 cut(s) | 130 |
| BstNSI | RCATGY | 4 cut(s) | 323, 379, 543, 736 |
| BstSCI | CCNGG | 2 cut(s) | 128, 228 |
| BstV1I | GCAGC | 2 cut(s) | 421, 505 |
| BstX2I | RGATCY | 1 cut(s) | 225 |
| BstYI | RGATCY | 1 cut(s) | 225 |
| BtsCI | GGATG | 4 cut(s) | 76, 402, 418, 527 |
| BtsIMutI | CAGTG | 1 cut(s) | 211 |
| Cac8I | GCNNGC | 2 cut(s) | 377, 525 |
| CfoI | GCGC | 1 cut(s) | 523 |
| Cfr10I | RCCGGY | 1 cut(s) | 785 |
| Cfr13I | GGNCC | 1 cut(s) | 361 |
| Csp6I | GTAC | 2 cut(s) | 61, 251 |
| CspAI | ACCGGT | 1 cut(s) | 785 |
| CviAII | CATG | 6 cut(s) | 215, 320, 365, 376, 540, 733 |
| CviJI | RGCY | 9 cut(s) | 18, 25, 58, 68, 116, 434, 623, 650, 721 |
| CviKI_1 | RGCY | 9 cut(s) | 18, 25, 58, 68, 116, 434, 623, 650, 721 |
| CviQI | GTAC | 2 cut(s) | 61, 251 |
| DdeI | CTNAG | 2 cut(s) | 240, 383 |
| DpnI | GATC | 1 cut(s) | 227 |
| DpnII | GATC | 1 cut(s) | 225 |
| DraI | TTTAAA | 1 cut(s) | 144 |
| Eco130I | CCWWGG | 1 cut(s) | 737 |
| Eco47I | GGWCC | 1 cut(s) | 361 |
| EcoRII | CCWGG | 1 cut(s) | 128 |
| EcoT14I | CCWWGG | 1 cut(s) | 737 |
| EcoT22I | ATGCAT | 1 cut(s) | 377 |
| ErhI | CCWWGG | 1 cut(s) | 737 |
| FaeI | CATG | 6 cut(s) | 218, 323, 368, 379, 543, 736 |
| FatI | CATG | 6 cut(s) | 214, 319, 364, 375, 539, 732 |
| Fnu4HI | GCNGC | 2 cut(s) | 435, 519 |
| FokI | GGATG | 4 cut(s) | 63, 405, 409, 514 |
| Fsp4HI | GCNGC | 2 cut(s) | 435, 519 |
| FspBI | CTAG | 2 cut(s) | 248, 681 |
| GlaI | GCGC | 1 cut(s) | 522 |
| GluI | GCNGC | 2 cut(s) | 435, 519 |
| GsuI | CTGGAG | 2 cut(s) | 40, 151 |
| HapII | CCGG | 2 cut(s) | 230, 786 |
| HhaI | GCGC | 1 cut(s) | 523 |
| Hin1II | CATG | 6 cut(s) | 218, 323, 368, 379, 543, 736 |
| Hin6I | GCGC | 1 cut(s) | 521 |
| HinP1I | GCGC | 1 cut(s) | 521 |
| HpaII | CCGG | 2 cut(s) | 230, 786 |
| HphI | GGTGA | 1 cut(s) | 268 |
| Hpy188I | TCNGA | 2 cut(s) | 289, 691 |
| Hpy188III | TCNNGA | 1 cut(s) | 422 |
| HpyCH4IV | ACGT | 4 cut(s) | 427, 514, 660, 767 |
| HpyCH4V | TGCA | 6 cut(s) | 8, 53, 375, 437, 601, 673 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 269, 356, 524 |
| HpyF3I | CTNAG | 2 cut(s) | 240, 383 |
| HpySE526I | ACGT | 4 cut(s) | 427, 514, 660, 767 |
| Hsp92II | CATG | 6 cut(s) | 218, 323, 368, 379, 543, 736 |
| HspAI | GCGC | 1 cut(s) | 521 |
| Kzo9I | GATC | 1 cut(s) | 225 |
| LmnI | GCTCC | 2 cut(s) | 121, 726 |
| Lsp1109I | GCAGC | 2 cut(s) | 421, 505 |
| LweI | GCATC | 2 cut(s) | 427, 536 |
| MaeI | CTAG | 2 cut(s) | 248, 681 |
| MaeII | ACGT | 4 cut(s) | 427, 514, 660, 767 |
| MaeIII | GTNAC | 1 cut(s) | 510 |
| MalI | GATC | 1 cut(s) | 227 |
| MboI | GATC | 1 cut(s) | 225 |
| MboII | GAAGA | 3 cut(s) | 413, 540, 629 |
| MfeI | CAATTG | 2 cut(s) | 605, 747 |
| MflI | RGATCY | 1 cut(s) | 225 |
| MhlI | GDGCHC | 1 cut(s) | 274 |
| MluCI | AATT | 4 cut(s) | 48, 335, 605, 747 |
| Mph1103I | ATGCAT | 1 cut(s) | 377 |
| MseI | TTAA | 1 cut(s) | 143 |
| MspI | CCGG | 2 cut(s) | 230, 786 |
| MspR9I | CCNGG | 2 cut(s) | 130, 230 |
| MunI | CAATTG | 2 cut(s) | 605, 747 |
| MvaI | CCWGG | 1 cut(s) | 130 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 269, 356, 524 |
| NciI | CCSGG | 1 cut(s) | 230 |
| NdeII | GATC | 1 cut(s) | 225 |
| NlaIII | CATG | 6 cut(s) | 218, 323, 368, 379, 543, 736 |
| NlaIV | GGNNCC | 3 cut(s) | 117, 227, 304 |
| NsiI | ATGCAT | 1 cut(s) | 377 |
| NspI | RCATGY | 4 cut(s) | 323, 379, 543, 736 |
| PaeI | GCATGC | 1 cut(s) | 379 |
| PciI | ACATGT | 1 cut(s) | 539 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 414 |
| PfoI | TCCNGGA | 2 cut(s) | 128, 228 |
| PinAI | ACCGGT | 1 cut(s) | 785 |
| PkrI | GCNGC | 2 cut(s) | 436, 520 |
| Ppu21I | YACGTR | 1 cut(s) | 515 |
| PscI | ACATGT | 1 cut(s) | 539 |
| Psp6I | CCWGG | 1 cut(s) | 128 |
| PspGI | CCWGG | 1 cut(s) | 128 |
| PspN4I | GGNNCC | 3 cut(s) | 117, 227, 304 |
| PspPI | GGNCC | 1 cut(s) | 361 |
| PsuI | RGATCY | 1 cut(s) | 225 |
| RsaI | GTAC | 2 cut(s) | 62, 252 |
| RsaNI | GTAC | 2 cut(s) | 61, 251 |
| SaqAI | TTAA | 1 cut(s) | 143 |
| SatI | GCNGC | 2 cut(s) | 435, 519 |
| Sau3AI | GATC | 1 cut(s) | 225 |
| Sau96I | GGNCC | 1 cut(s) | 361 |
| ScrFI | CCNGG | 2 cut(s) | 130, 230 |
| SduI | GDGCHC | 1 cut(s) | 274 |
| SetI | ASST | 9 cut(s) | 70, 157, 294, 430, 517, 589, 663, 723, 770 |
| SfaNI | GCATC | 2 cut(s) | 427, 536 |
| SinI | GGWCC | 1 cut(s) | 361 |
| SphI | GCATGC | 1 cut(s) | 379 |
| Sse9I | AATT | 4 cut(s) | 48, 335, 605, 747 |
| SsiI | CCGC | 1 cut(s) | 359 |
| SspI | AATATT | 1 cut(s) | 774 |
| SspMI | CTAG | 2 cut(s) | 248, 681 |
| StyD4I | CCNGG | 2 cut(s) | 128, 228 |
| StyI | CCWWGG | 1 cut(s) | 737 |
| TaiI | ACGT | 4 cut(s) | 430, 517, 663, 770 |
| TaqI | TCGA | 2 cut(s) | 89, 462 |
| TasI | AATT | 4 cut(s) | 48, 335, 605, 747 |
| TatI | WGTACW | 2 cut(s) | 60, 250 |
| Tru1I | TTAA | 1 cut(s) | 143 |
| Tru9I | TTAA | 1 cut(s) | 143 |
| TscAI | CASTG | 1 cut(s) | 211 |
| TseI | GCWGC | 2 cut(s) | 434, 518 |
| TspGWI | ACGGA | 1 cut(s) | 650 |
| TspRI | CASTG | 1 cut(s) | 211 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 414 |
| VpaK11BI | GGWCC | 1 cut(s) | 361 |
| XceI | RCATGY | 4 cut(s) | 323, 379, 543, 736 |
| XspI | CTAG | 2 cut(s) | 248, 681 |
| Zsp2I | ATGCAT | 1 cut(s) | 377 |