Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 190 |
| AbsI | CCTCGAGG | 1 cut(s) | 525 |
| AccI | GTMKAC | 3 cut(s) | 120, 184, 597 |
| AccII | CGCG | 1 cut(s) | 636 |
| AcyI | GRCGYC | 1 cut(s) | 187 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 69, 527, 652 |
| AflII | CTTAAG | 1 cut(s) | 536 |
| AflIII | ACRYGT | 2 cut(s) | 153, 328 |
| AgsI | TTSAA | 2 cut(s) | 286, 311 |
| AjnI | CCWGG | 3 cut(s) | 143, 191, 650 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 213, 245 |
| AluBI | AGCT | 5 cut(s) | 22, 167, 314, 557, 628 |
| AluI | AGCT | 5 cut(s) | 22, 167, 314, 557, 628 |
| Alw21I | GWGCWC | 2 cut(s) | 24, 453 |
| Ama87I | CYCGRG | 1 cut(s) | 525 |
| AoxI | GGCC | 2 cut(s) | 195, 241 |
| ApeKI | GCWGC | 2 cut(s) | 272, 554 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 48 |
| AspS9I | GGNCC | 3 cut(s) | 140, 195, 242 |
| AsuHPI | GGTGA | 1 cut(s) | 499 |
| AvaI | CYCGRG | 1 cut(s) | 525 |
| AvaII | GGWCC | 1 cut(s) | 140 |
| BanII | GRGCYC | 1 cut(s) | 24 |
| Bbv12I | GWGCWC | 2 cut(s) | 24, 453 |
| BbvI | GCAGC | 2 cut(s) | 284, 566 |
| BceAI | ACGGC | 1 cut(s) | 548 |
| BciT130I | CCWGG | 3 cut(s) | 145, 193, 652 |
| BciVI | GTATCC | 1 cut(s) | 490 |
| BfaI | CTAG | 4 cut(s) | 239, 248, 261, 548 |
| BfrI | CTTAAG | 1 cut(s) | 536 |
| BfuI | GTATCC | 1 cut(s) | 490 |
| BisI | GCNGC | 2 cut(s) | 273, 555 |
| BlsI | GCNGC | 2 cut(s) | 274, 556 |
| Bme1390I | CCNGG | 3 cut(s) | 145, 193, 652 |
| Bme18I | GGWCC | 1 cut(s) | 140 |
| BmeT110I | CYCGRG | 1 cut(s) | 525 |
| BmgT120I | GGNCC | 3 cut(s) | 140, 195, 242 |
| BmiI | GGNNCC | 1 cut(s) | 142 |
| BmrFI | CCNGG | 3 cut(s) | 145, 193, 652 |
| BmrI | ACTGGG | 2 cut(s) | 121, 461 |
| BmsI | GCATC | 1 cut(s) | 541 |
| BmuI | ACTGGG | 2 cut(s) | 121, 461 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 11, 43 |
| BpuEI | CTTGAG | 1 cut(s) | 161 |
| BsaHI | GRCGYC | 1 cut(s) | 187 |
| BsaJI | CCNNGG | 5 cut(s) | 143, 144, 191, 192, 651 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 69, 527, 652 |
| Bse1I | ACTGG | 2 cut(s) | 116, 467 |
| BseBI | CCWGG | 3 cut(s) | 145, 193, 652 |
| BseDI | CCNNGG | 5 cut(s) | 143, 144, 191, 192, 651 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 69, 527, 652 |
| BseNI | ACTGG | 2 cut(s) | 116, 467 |
| BseRI | GAGGAG | 2 cut(s) | 32, 50 |
| BseXI | GCAGC | 2 cut(s) | 284, 566 |
| BsgI | GTGCAG | 1 cut(s) | 291 |
| Bsh1236I | CGCG | 1 cut(s) | 636 |
| BshFI | GGCC | 2 cut(s) | 197, 243 |
| BsiHKAI | GWGCWC | 2 cut(s) | 24, 453 |
| BsiHKCI | CYCGRG | 1 cut(s) | 525 |
| BslFI | GGGAC | 2 cut(s) | 126, 174 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 69, 527, 652 |
| BsmFI | GGGAC | 2 cut(s) | 126, 174 |
| BsnI | GGCC | 2 cut(s) | 197, 243 |
| BsoBI | CYCGRG | 1 cut(s) | 525 |
| Bsp1286I | GDGCHC | 2 cut(s) | 24, 453 |
| Bsp143I | GATC | 2 cut(s) | 540, 637 |
| Bsp68I | TCGCGA | 1 cut(s) | 636 |
| BspANI | GGCC | 2 cut(s) | 197, 243 |
| BspFNI | CGCG | 1 cut(s) | 636 |
| BspLI | GGNNCC | 1 cut(s) | 142 |
| BspQI | GCTCTTC | 2 cut(s) | 29, 441 |
| BspTI | CTTAAG | 1 cut(s) | 536 |
| BsrI | ACTGG | 2 cut(s) | 116, 467 |
| BssECI | CCNNGG | 5 cut(s) | 143, 144, 191, 192, 651 |
| BssMI | GATC | 2 cut(s) | 540, 637 |
| BssNAI | GTATAC | 1 cut(s) | 121 |
| BssNI | GRCGYC | 1 cut(s) | 187 |
| Bst1107I | GTATAC | 1 cut(s) | 121 |
| Bst2UI | CCWGG | 3 cut(s) | 145, 193, 652 |
| Bst4CI | ACNGT | 2 cut(s) | 269, 502 |
| Bst6I | CTCTTC | 2 cut(s) | 29, 441 |
| BstACI | GRCGYC | 1 cut(s) | 187 |
| BstAFI | CTTAAG | 1 cut(s) | 536 |
| BstC8I | GCNNGC | 2 cut(s) | 236, 258 |
| BstDEI | CTNAG | 2 cut(s) | 65, 91 |
| BstFNI | CGCG | 1 cut(s) | 636 |
| BstKTI | GATC | 2 cut(s) | 543, 640 |
| BstMBI | GATC | 2 cut(s) | 540, 637 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 240, 563, 642 |
| BstNI | CCWGG | 3 cut(s) | 145, 193, 652 |
| BstNSI | RCATGY | 5 cut(s) | 157, 238, 332, 419, 442 |
| BstSCI | CCNGG | 3 cut(s) | 143, 191, 650 |
| BstUI | CGCG | 1 cut(s) | 636 |
| BstV1I | GCAGC | 2 cut(s) | 284, 566 |
| BstZ17I | GTATAC | 1 cut(s) | 121 |
| BsuI | GTATCC | 1 cut(s) | 490 |
| BsuRI | GGCC | 2 cut(s) | 197, 243 |
| BtuMI | TCGCGA | 1 cut(s) | 636 |
| Cac8I | GCNNGC | 2 cut(s) | 236, 258 |
| Cfr13I | GGNCC | 3 cut(s) | 140, 195, 242 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 234, 269 |
| CviAII | CATG | 8 cut(s) | 5, 154, 199, 235, 329, 412, 416, 439 |
| DdeI | CTNAG | 2 cut(s) | 65, 91 |
| DpnI | GATC | 2 cut(s) | 542, 639 |
| DpnII | GATC | 2 cut(s) | 540, 637 |
| Eam1104I | CTCTTC | 2 cut(s) | 29, 441 |
| EarI | CTCTTC | 2 cut(s) | 29, 441 |
| Ecl136II | GAGCTC | 1 cut(s) | 22 |
| Eco24I | GRGCYC | 1 cut(s) | 24 |
| Eco47I | GGWCC | 1 cut(s) | 140 |
| Eco53kI | GAGCTC | 1 cut(s) | 22 |
| Eco88I | CYCGRG | 1 cut(s) | 525 |
| EcoICRI | GAGCTC | 1 cut(s) | 22 |
| EcoO109I | RGGNCCY | 1 cut(s) | 140 |
| EcoRII | CCWGG | 3 cut(s) | 143, 191, 650 |
| EcoT22I | ATGCAT | 2 cut(s) | 6, 417 |
| EcoT38I | GRGCYC | 1 cut(s) | 24 |
| FaeI | CATG | 8 cut(s) | 8, 157, 202, 238, 332, 415, 419, 442 |
| FaqI | GGGAC | 2 cut(s) | 126, 174 |
| FatI | CATG | 8 cut(s) | 4, 153, 198, 234, 328, 411, 415, 438 |
| FblI | GTMKAC | 3 cut(s) | 120, 184, 597 |
| Fnu4HI | GCNGC | 2 cut(s) | 273, 555 |
| FriOI | GRGCYC | 1 cut(s) | 24 |
| Fsp4HI | GCNGC | 2 cut(s) | 273, 555 |
| FspBI | CTAG | 4 cut(s) | 239, 248, 261, 548 |
| GluI | GCNGC | 2 cut(s) | 273, 555 |
| HaeIII | GGCC | 2 cut(s) | 197, 243 |
| Hin1I | GRCGYC | 1 cut(s) | 187 |
| Hin1II | CATG | 8 cut(s) | 8, 157, 202, 238, 332, 415, 419, 442 |
| HincII | GTYRAC | 1 cut(s) | 185 |
| HindII | GTYRAC | 1 cut(s) | 185 |
| HindIII | AAGCTT | 1 cut(s) | 165 |
| HinfI | GANTC | 2 cut(s) | 49, 490 |
| HphI | GGTGA | 1 cut(s) | 499 |
| Hpy166II | GTNNAC | 4 cut(s) | 121, 185, 334, 598 |
| Hpy188I | TCNGA | 1 cut(s) | 370 |
| Hpy188III | TCNNGA | 3 cut(s) | 494, 548, 635 |
| Hpy8I | GTNNAC | 4 cut(s) | 121, 185, 334, 598 |
| Hpy99I | CGWCG | 1 cut(s) | 189 |
| HpyAV | CCTTC | 2 cut(s) | 204, 215 |
| HpyCH4III | ACNGT | 2 cut(s) | 269, 502 |
| HpyCH4IV | ACGT | 3 cut(s) | 187, 278, 425 |
| HpyCH4V | TGCA | 6 cut(s) | 4, 202, 272, 415, 554, 566 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 240, 563, 642 |
| HpyF3I | CTNAG | 2 cut(s) | 65, 91 |
| HpySE526I | ACGT | 3 cut(s) | 187, 278, 425 |
| Hsp92I | GRCGYC | 1 cut(s) | 187 |
| Hsp92II | CATG | 8 cut(s) | 8, 157, 202, 238, 332, 415, 419, 442 |
| Kzo9I | GATC | 2 cut(s) | 540, 637 |
| LguI | GCTCTTC | 2 cut(s) | 29, 441 |
| LmnI | GCTCC | 2 cut(s) | 19, 625 |
| LpnPI | CCDG | 8 cut(s) | 93, 97, 130, 157, 178, 205, 480, 637 |
| Lsp1109I | GCAGC | 2 cut(s) | 284, 566 |
| LweI | GCATC | 1 cut(s) | 541 |
| MaeI | CTAG | 4 cut(s) | 239, 248, 261, 548 |
| MaeII | ACGT | 3 cut(s) | 187, 278, 425 |
| MaeIII | GTNAC | 2 cut(s) | 421, 475 |
| MalI | GATC | 2 cut(s) | 542, 639 |
| MboI | GATC | 2 cut(s) | 540, 637 |
| MboII | GAAGA | 3 cut(s) | 16, 411, 458 |
| MhlI | GDGCHC | 2 cut(s) | 24, 453 |
| MluCI | AATT | 3 cut(s) | 44, 227, 297 |
| MnlI | CCTC | 7 cut(s) | 10, 28, 31, 131, 389, 521, 534 |
| Mph1103I | ATGCAT | 2 cut(s) | 6, 417 |
| MroXI | GAANNNNTTC | 1 cut(s) | 48 |
| MseI | TTAA | 5 cut(s) | 318, 405, 537, 561, 620 |
| MspCI | CTTAAG | 1 cut(s) | 536 |
| MspR9I | CCNGG | 3 cut(s) | 145, 193, 652 |
| MvaI | CCWGG | 3 cut(s) | 145, 193, 652 |
| MvnI | CGCG | 1 cut(s) | 636 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 240, 563, 642 |
| NdeII | GATC | 2 cut(s) | 540, 637 |
| NlaIII | CATG | 8 cut(s) | 8, 157, 202, 238, 332, 415, 419, 442 |
| NlaIV | GGNNCC | 1 cut(s) | 142 |
| NruI | TCGCGA | 1 cut(s) | 636 |
| NsiI | ATGCAT | 2 cut(s) | 6, 417 |
| NspI | RCATGY | 5 cut(s) | 157, 238, 332, 419, 442 |
| PaeI | GCATGC | 1 cut(s) | 238 |
| PaeR7I | CTCGAG | 1 cut(s) | 525 |
| PasI | CCCWGGG | 2 cut(s) | 144, 192 |
| PciI | ACATGT | 2 cut(s) | 153, 328 |
| PciSI | GCTCTTC | 2 cut(s) | 29, 441 |
| PdmI | GAANNNNTTC | 1 cut(s) | 48 |
| PfeI | GAWTC | 2 cut(s) | 49, 490 |
| PkrI | GCNGC | 2 cut(s) | 274, 556 |
| PpuMI | RGGWCCY | 1 cut(s) | 140 |
| PscI | ACATGT | 2 cut(s) | 153, 328 |
| Psp124BI | GAGCTC | 1 cut(s) | 24 |
| Psp5II | RGGWCCY | 1 cut(s) | 140 |
| Psp6I | CCWGG | 3 cut(s) | 143, 191, 650 |
| PspGI | CCWGG | 3 cut(s) | 143, 191, 650 |
| PspN4I | GGNNCC | 1 cut(s) | 142 |
| PspPI | GGNCC | 3 cut(s) | 140, 195, 242 |
| PspPPI | RGGWCCY | 1 cut(s) | 140 |
| PspXI | VCTCGAGB | 1 cut(s) | 525 |
| RruI | TCGCGA | 1 cut(s) | 636 |
| SacI | GAGCTC | 1 cut(s) | 24 |
| SalI | GTCGAC | 1 cut(s) | 183 |
| SapI | GCTCTTC | 2 cut(s) | 29, 441 |
| SaqAI | TTAA | 5 cut(s) | 318, 405, 537, 561, 620 |
| SatI | GCNGC | 2 cut(s) | 273, 555 |
| Sau3AI | GATC | 2 cut(s) | 540, 637 |
| Sau96I | GGNCC | 3 cut(s) | 140, 195, 242 |
| ScrFI | CCNGG | 3 cut(s) | 145, 193, 652 |
| SduI | GDGCHC | 2 cut(s) | 24, 453 |
| SfaNI | GCATC | 1 cut(s) | 541 |
| Sfr274I | CTCGAG | 1 cut(s) | 525 |
| SinI | GGWCC | 1 cut(s) | 140 |
| SlaI | CTCGAG | 1 cut(s) | 525 |
| SmlI | CTYRAG | 3 cut(s) | 176, 525, 536 |
| SmoI | CTYRAG | 3 cut(s) | 176, 525, 536 |
| SphI | GCATGC | 1 cut(s) | 238 |
| Sse9I | AATT | 3 cut(s) | 44, 227, 297 |
| SspMI | CTAG | 4 cut(s) | 239, 248, 261, 548 |
| SstI | GAGCTC | 1 cut(s) | 24 |
| StyD4I | CCNGG | 3 cut(s) | 143, 191, 650 |
| TaaI | ACNGT | 2 cut(s) | 269, 502 |
| TaiI | ACGT | 3 cut(s) | 190, 281, 428 |
| TaqI | TCGA | 2 cut(s) | 184, 526 |
| TasI | AATT | 3 cut(s) | 44, 227, 297 |
| TfiI | GAWTC | 2 cut(s) | 49, 490 |
| Tru1I | TTAA | 5 cut(s) | 318, 405, 537, 561, 620 |
| Tru9I | TTAA | 5 cut(s) | 318, 405, 537, 561, 620 |
| TseI | GCWGC | 2 cut(s) | 272, 554 |
| TspDTI | ATGAA | 2 cut(s) | 41, 234 |
| Vha464I | CTTAAG | 1 cut(s) | 536 |
| VpaK11BI | GGWCC | 1 cut(s) | 140 |
| XbaI | TCTAGA | 1 cut(s) | 547 |
| XceI | RCATGY | 5 cut(s) | 157, 238, 332, 419, 442 |
| XhoI | CTCGAG | 1 cut(s) | 525 |
| XmiI | GTMKAC | 3 cut(s) | 120, 184, 597 |
| XmnI | GAANNNNTTC | 1 cut(s) | 48 |
| XspI | CTAG | 4 cut(s) | 239, 248, 261, 548 |
| ZraI | GACGTC | 1 cut(s) | 188 |
| Zsp2I | ATGCAT | 2 cut(s) | 6, 417 |