ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 987 |
| Acc36I | ACCTGC | 2 cut(s) | 712, 739 |
| AccI | GTMKAC | 1 cut(s) | 39 |
| AciI | CCGC | 2 cut(s) | 468, 938 |
| AcsI | RAATTY | 3 cut(s) | 45, 483, 618 |
| AcuI | CTGAAG | 1 cut(s) | 210 |
| AfaI | GTAC | 2 cut(s) | 732, 806 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 928 |
| AgsI | TTSAA | 3 cut(s) | 76, 418, 926 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 68, 100 |
| AluBI | AGCT | 6 cut(s) | 239, 401, 447, 716, 862, 983 |
| AluI | AGCT | 6 cut(s) | 239, 401, 447, 716, 862, 983 |
| Alw26I | GTCTC | 1 cut(s) | 557 |
| AoxI | GGCC | 3 cut(s) | 14, 63, 736 |
| ApeKI | GCWGC | 2 cut(s) | 401, 935 |
| ApoI | RAATTY | 3 cut(s) | 45, 483, 618 |
| AspS9I | GGNCC | 3 cut(s) | 64, 736, 868 |
| AsuHPI | GGTGA | 2 cut(s) | 773, 816 |
| AvaII | GGWCC | 1 cut(s) | 868 |
| BanII | GRGCYC | 1 cut(s) | 961 |
| BbsI | GAAGAC | 1 cut(s) | 813 |
| BbvI | GCAGC | 2 cut(s) | 388, 947 |
| BciVI | GTATCC | 2 cut(s) | 96, 673 |
| BcoDI | GTCTC | 1 cut(s) | 557 |
| BfaI | CTAG | 1 cut(s) | 717 |
| BfmI | CTRYAG | 1 cut(s) | 260 |
| BfuAI | ACCTGC | 2 cut(s) | 712, 739 |
| BfuI | GTATCC | 2 cut(s) | 96, 673 |
| BglII | AGATCT | 1 cut(s) | 629 |
| BisI | GCNGC | 3 cut(s) | 402, 936, 939 |
| BlsI | GCNGC | 3 cut(s) | 403, 937, 940 |
| Bme18I | GGWCC | 1 cut(s) | 868 |
| BmgT120I | GGNCC | 3 cut(s) | 64, 736, 868 |
| BmiI | GGNNCC | 1 cut(s) | 870 |
| BmsI | GCATC | 2 cut(s) | 577, 829 |
| BpiI | GAAGAC | 1 cut(s) | 813 |
| BpmI | CTGGAG | 2 cut(s) | 469, 646 |
| Bpu10I | CCTNAGC | 1 cut(s) | 942 |
| BsaBI | GATNNNNATC | 2 cut(s) | 567, 894 |
| BsaI | GGTCTC | 1 cut(s) | 557 |
| BsaJI | CCNNGG | 1 cut(s) | 328 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 928 |
| Bse1I | ACTGG | 1 cut(s) | 629 |
| Bse8I | GATNNNNATC | 2 cut(s) | 567, 894 |
| BseDI | CCNNGG | 1 cut(s) | 328 |
| BseGI | GGATG | 1 cut(s) | 895 |
| BseJI | GATNNNNATC | 2 cut(s) | 567, 894 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 928 |
| BseMII | CTCAG | 1 cut(s) | 872 |
| BseNI | ACTGG | 1 cut(s) | 629 |
| BseRI | GAGGAG | 3 cut(s) | 715, 819, 872 |
| BseXI | GCAGC | 2 cut(s) | 388, 947 |
| BsgI | GTGCAG | 1 cut(s) | 114 |
| BshFI | GGCC | 3 cut(s) | 16, 65, 738 |
| BslFI | GGGAC | 1 cut(s) | 904 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 928 |
| BsmAI | GTCTC | 1 cut(s) | 557 |
| BsmFI | GGGAC | 1 cut(s) | 904 |
| BsnI | GGCC | 3 cut(s) | 16, 65, 738 |
| Bso31I | GGTCTC | 1 cut(s) | 557 |
| Bsp1286I | GDGCHC | 1 cut(s) | 961 |
| Bsp143I | GATC | 2 cut(s) | 389, 629 |
| BspACI | CCGC | 2 cut(s) | 468, 938 |
| BspANI | GGCC | 3 cut(s) | 16, 65, 738 |
| BspCNI | CTCAG | 1 cut(s) | 873 |
| BspLI | GGNNCC | 1 cut(s) | 870 |
| BspMI | ACCTGC | 2 cut(s) | 712, 739 |
| BspTNI | GGTCTC | 1 cut(s) | 557 |
| BsrI | ACTGG | 1 cut(s) | 629 |
| BssECI | CCNNGG | 1 cut(s) | 328 |
| BssMI | GATC | 2 cut(s) | 389, 629 |
| BssT1I | CCWWGG | 1 cut(s) | 328 |
| Bst4CI | ACNGT | 1 cut(s) | 642 |
| Bst6I | CTCTTC | 1 cut(s) | 186 |
| BstC8I | GCNNGC | 2 cut(s) | 371, 907 |
| BstDEI | CTNAG | 4 cut(s) | 6, 654, 881, 942 |
| BstF5I | GGATG | 1 cut(s) | 895 |
| BstKTI | GATC | 2 cut(s) | 392, 632 |
| BstMAI | GTCTC | 1 cut(s) | 557 |
| BstMBI | GATC | 2 cut(s) | 389, 629 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 407 |
| BstSFI | CTRYAG | 1 cut(s) | 260 |
| BstV1I | GCAGC | 2 cut(s) | 388, 947 |
| BstV2I | GAAGAC | 1 cut(s) | 813 |
| BstX2I | RGATCY | 1 cut(s) | 629 |
| BstYI | RGATCY | 1 cut(s) | 629 |
| BsuI | GTATCC | 2 cut(s) | 96, 673 |
| BsuRI | GGCC | 3 cut(s) | 16, 65, 738 |
| BtsCI | GGATG | 1 cut(s) | 895 |
| BtsIMutI | CAGTG | 1 cut(s) | 622 |
| BveI | ACCTGC | 2 cut(s) | 712, 739 |
| Cac8I | GCNNGC | 2 cut(s) | 371, 907 |
| Cfr13I | GGNCC | 3 cut(s) | 64, 736, 868 |
| Csp6I | GTAC | 2 cut(s) | 731, 805 |
| CviAII | CATG | 3 cut(s) | 353, 380, 696 |
| CviQI | GTAC | 2 cut(s) | 731, 805 |
| DdeI | CTNAG | 4 cut(s) | 6, 654, 881, 942 |
| DpnI | GATC | 2 cut(s) | 391, 631 |
| DpnII | GATC | 2 cut(s) | 389, 629 |
| Eam1104I | CTCTTC | 1 cut(s) | 186 |
| EarI | CTCTTC | 1 cut(s) | 186 |
| Eco130I | CCWWGG | 1 cut(s) | 328 |
| Eco147I | AGGCCT | 1 cut(s) | 16 |
| Eco24I | GRGCYC | 1 cut(s) | 961 |
| Eco31I | GGTCTC | 1 cut(s) | 557 |
| Eco32I | GATATC | 1 cut(s) | 325 |
| Eco47I | GGWCC | 1 cut(s) | 868 |
| Eco57I | CTGAAG | 1 cut(s) | 210 |
| EcoO109I | RGGNCCY | 1 cut(s) | 736 |
| EcoRV | GATATC | 1 cut(s) | 325 |
| EcoT14I | CCWWGG | 1 cut(s) | 328 |
| EcoT22I | ATGCAT | 2 cut(s) | 229, 570 |
| EcoT38I | GRGCYC | 1 cut(s) | 961 |
| ErhI | CCWWGG | 1 cut(s) | 328 |
| FaeI | CATG | 3 cut(s) | 356, 383, 699 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 411, 443 |
| FaqI | GGGAC | 1 cut(s) | 904 |
| FatI | CATG | 3 cut(s) | 352, 379, 695 |
| FblI | GTMKAC | 1 cut(s) | 39 |
| Fnu4HI | GCNGC | 3 cut(s) | 402, 936, 939 |
| FokI | GGATG | 1 cut(s) | 902 |
| FriOI | GRGCYC | 1 cut(s) | 961 |
| Fsp4HI | GCNGC | 3 cut(s) | 402, 936, 939 |
| FspBI | CTAG | 1 cut(s) | 717 |
| GluI | GCNGC | 3 cut(s) | 402, 936, 939 |
| GsuI | CTGGAG | 2 cut(s) | 469, 646 |
| HaeIII | GGCC | 3 cut(s) | 16, 65, 738 |
| Hin1II | CATG | 3 cut(s) | 356, 383, 699 |
| HincII | GTYRAC | 1 cut(s) | 203 |
| HindII | GTYRAC | 1 cut(s) | 203 |
| HinfI | GANTC | 3 cut(s) | 599, 781, 793 |
| HphI | GGTGA | 2 cut(s) | 773, 816 |
| Hpy166II | GTNNAC | 3 cut(s) | 40, 203, 805 |
| Hpy188I | TCNGA | 3 cut(s) | 212, 604, 882 |
| Hpy188III | TCNNGA | 1 cut(s) | 797 |
| Hpy8I | GTNNAC | 3 cut(s) | 40, 203, 805 |
| HpyAV | CCTTC | 2 cut(s) | 652, 932 |
| HpyCH4III | ACNGT | 1 cut(s) | 642 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 407 |
| HpyF3I | CTNAG | 4 cut(s) | 6, 654, 881, 942 |
| Hsp92II | CATG | 3 cut(s) | 356, 383, 699 |
| Kzo9I | GATC | 2 cut(s) | 389, 629 |
| LmnI | GCTCC | 3 cut(s) | 702, 859, 946 |
| Lsp1109I | GCAGC | 2 cut(s) | 388, 947 |
| LweI | GCATC | 2 cut(s) | 577, 829 |
| MaeI | CTAG | 1 cut(s) | 717 |
| MaeIII | GTNAC | 1 cut(s) | 118 |
| MalI | GATC | 2 cut(s) | 391, 631 |
| MboI | GATC | 2 cut(s) | 389, 629 |
| MboII | GAAGA | 5 cut(s) | 88, 91, 203, 399, 813 |
| MfeI | CAATTG | 2 cut(s) | 308, 926 |
| MflI | RGATCY | 1 cut(s) | 629 |
| MhlI | GDGCHC | 1 cut(s) | 961 |
| MmeI | TCCRAC | 1 cut(s) | 364 |
| Mph1103I | ATGCAT | 2 cut(s) | 229, 570 |
| MseI | TTAA | 3 cut(s) | 11, 464, 492 |
| MslI | CAYNNNNRTG | 1 cut(s) | 694 |
| MspA1I | CMGCKG | 3 cut(s) | 401, 447, 938 |
| MunI | CAATTG | 2 cut(s) | 308, 926 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 407 |
| NdeII | GATC | 2 cut(s) | 389, 629 |
| NlaIII | CATG | 3 cut(s) | 356, 383, 699 |
| NlaIV | GGNNCC | 1 cut(s) | 870 |
| NsiI | ATGCAT | 2 cut(s) | 229, 570 |
| PceI | AGGCCT | 1 cut(s) | 16 |
| PfeI | GAWTC | 3 cut(s) | 599, 781, 793 |
| PkrI | GCNGC | 3 cut(s) | 403, 937, 940 |
| PsiI | TTATAA | 1 cut(s) | 987 |
| PspN4I | GGNNCC | 1 cut(s) | 870 |
| PspPI | GGNCC | 3 cut(s) | 64, 736, 868 |
| PsuI | RGATCY | 1 cut(s) | 629 |
| PvuII | CAGCTG | 2 cut(s) | 401, 447 |
| RsaI | GTAC | 2 cut(s) | 732, 806 |
| RsaNI | GTAC | 2 cut(s) | 731, 805 |
| RseI | CAYNNNNRTG | 1 cut(s) | 694 |
| SaqAI | TTAA | 3 cut(s) | 11, 464, 492 |
| SatI | GCNGC | 3 cut(s) | 402, 936, 939 |
| Sau3AI | GATC | 2 cut(s) | 389, 629 |
| Sau96I | GGNCC | 3 cut(s) | 64, 736, 868 |
| SduI | GDGCHC | 1 cut(s) | 961 |
| SfaNI | GCATC | 2 cut(s) | 577, 829 |
| SfcI | CTRYAG | 1 cut(s) | 260 |
| SinI | GGWCC | 1 cut(s) | 868 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 694 |
| SseBI | AGGCCT | 1 cut(s) | 16 |
| SsiI | CCGC | 2 cut(s) | 468, 938 |
| SspI | AATATT | 1 cut(s) | 217 |
| SspMI | CTAG | 1 cut(s) | 717 |
| StuI | AGGCCT | 1 cut(s) | 16 |
| StyI | CCWWGG | 1 cut(s) | 328 |
| TaaI | ACNGT | 1 cut(s) | 642 |
| TatI | WGTACW | 1 cut(s) | 730 |
| TauI | GCSGC | 1 cut(s) | 941 |
| TfiI | GAWTC | 3 cut(s) | 599, 781, 793 |
| Tru1I | TTAA | 3 cut(s) | 11, 464, 492 |
| Tru9I | TTAA | 3 cut(s) | 11, 464, 492 |
| TscAI | CASTG | 1 cut(s) | 629 |
| TseI | GCWGC | 2 cut(s) | 401, 935 |
| TspDTI | ATGAA | 2 cut(s) | 542, 684 |
| TspRI | CASTG | 1 cut(s) | 629 |
| VpaK11BI | GGWCC | 1 cut(s) | 868 |
| XapI | RAATTY | 3 cut(s) | 45, 483, 618 |
| XmiI | GTMKAC | 1 cut(s) | 39 |
| XspI | CTAG | 1 cut(s) | 717 |
| Zsp2I | ATGCAT | 2 cut(s) | 229, 570 |