ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 2 - 81 | 1e-09 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 84 |
| AciI | CCGC | 1 cut(s) | 49 |
| AclWI | GGATC | 1 cut(s) | 201 |
| AcoI | YGGCCR | 1 cut(s) | 234 |
| AcyI | GRCGYC | 1 cut(s) | 81 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 91 |
| AgsI | TTSAA | 4 cut(s) | 98, 115, 182, 262 |
| AluBI | AGCT | 1 cut(s) | 111 |
| AluI | AGCT | 1 cut(s) | 111 |
| AlwI | GGATC | 1 cut(s) | 201 |
| Ama87I | CYCGRG | 1 cut(s) | 21 |
| AoxI | GGCC | 1 cut(s) | 234 |
| ApeKI | GCWGC | 4 cut(s) | 17, 46, 58, 228 |
| AspLEI | GCGC | 1 cut(s) | 228 |
| AvaI | CYCGRG | 1 cut(s) | 21 |
| BalI | TGGCCA | 1 cut(s) | 236 |
| BanII | GRGCYC | 2 cut(s) | 43, 125 |
| BbvI | GCAGC | 4 cut(s) | 4, 58, 70, 215 |
| BfaI | CTAG | 1 cut(s) | 287 |
| BfmI | CTRYAG | 2 cut(s) | 44, 86 |
| BisI | GCNGC | 5 cut(s) | 18, 47, 50, 59, 229 |
| BlsI | GCNGC | 5 cut(s) | 19, 48, 51, 60, 230 |
| BmeT110I | CYCGRG | 1 cut(s) | 21 |
| BsaHI | GRCGYC | 1 cut(s) | 81 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 91 |
| Bse1I | ACTGG | 1 cut(s) | 59 |
| BseGI | GGATG | 1 cut(s) | 31 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 91 |
| BseMII | CTCAG | 1 cut(s) | 267 |
| BseNI | ACTGG | 1 cut(s) | 59 |
| BseXI | GCAGC | 4 cut(s) | 4, 58, 70, 215 |
| BshFI | GGCC | 1 cut(s) | 236 |
| BsiHKCI | CYCGRG | 1 cut(s) | 21 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 91 |
| BsnI | GGCC | 1 cut(s) | 236 |
| BsoBI | CYCGRG | 1 cut(s) | 21 |
| Bsp1286I | GDGCHC | 2 cut(s) | 43, 125 |
| Bsp143I | GATC | 2 cut(s) | 136, 206 |
| BspACI | CCGC | 1 cut(s) | 49 |
| BspANI | GGCC | 1 cut(s) | 236 |
| BspCNI | CTCAG | 1 cut(s) | 266 |
| BspMAI | CTGCAG | 1 cut(s) | 48 |
| BspPI | GGATC | 1 cut(s) | 201 |
| BsrI | ACTGG | 1 cut(s) | 59 |
| BssMI | GATC | 2 cut(s) | 136, 206 |
| BssNI | GRCGYC | 1 cut(s) | 81 |
| BstACI | GRCGYC | 1 cut(s) | 81 |
| BstC8I | GCNNGC | 1 cut(s) | 322 |
| BstDEI | CTNAG | 2 cut(s) | 186, 253 |
| BstF5I | GGATG | 1 cut(s) | 31 |
| BstHHI | GCGC | 1 cut(s) | 228 |
| BstKTI | GATC | 2 cut(s) | 139, 209 |
| BstMBI | GATC | 2 cut(s) | 136, 206 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 55, 58 |
| BstNSI | RCATGY | 2 cut(s) | 65, 324 |
| BstSFI | CTRYAG | 2 cut(s) | 44, 86 |
| BstV1I | GCAGC | 4 cut(s) | 4, 58, 70, 215 |
| BsuRI | GGCC | 1 cut(s) | 236 |
| BtgZI | GCGATG | 1 cut(s) | 111 |
| BtsCI | GGATG | 1 cut(s) | 31 |
| BtsIMutI | CAGTG | 1 cut(s) | 52 |
| Cac8I | GCNNGC | 1 cut(s) | 322 |
| CfoI | GCGC | 1 cut(s) | 228 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 199, 201, 234, 236 |
| CviAII | CATG | 4 cut(s) | 62, 197, 232, 321 |
| CviJI | RGCY | 5 cut(s) | 17, 41, 111, 123, 236 |
| CviKI_1 | RGCY | 5 cut(s) | 17, 41, 111, 123, 236 |
| DdeI | CTNAG | 2 cut(s) | 186, 253 |
| DpnI | GATC | 2 cut(s) | 138, 208 |
| DpnII | GATC | 2 cut(s) | 136, 206 |
| EaeI | YGGCCR | 1 cut(s) | 234 |
| Eco24I | GRGCYC | 2 cut(s) | 43, 125 |
| Eco88I | CYCGRG | 1 cut(s) | 21 |
| EcoT38I | GRGCYC | 2 cut(s) | 43, 125 |
| FaeI | CATG | 4 cut(s) | 65, 200, 235, 324 |
| FaiI | YATR | 6 cut(s) | 14, 37, 63, 198, 233, 322 |
| FatI | CATG | 4 cut(s) | 61, 196, 231, 320 |
| Fnu4HI | GCNGC | 5 cut(s) | 18, 47, 50, 59, 229 |
| FokI | GGATG | 1 cut(s) | 38 |
| FriOI | GRGCYC | 2 cut(s) | 43, 125 |
| Fsp4HI | GCNGC | 5 cut(s) | 18, 47, 50, 59, 229 |
| FspBI | CTAG | 1 cut(s) | 287 |
| GlaI | GCGC | 1 cut(s) | 227 |
| GluI | GCNGC | 5 cut(s) | 18, 47, 50, 59, 229 |
| HaeIII | GGCC | 1 cut(s) | 236 |
| HhaI | GCGC | 1 cut(s) | 228 |
| Hin1I | GRCGYC | 1 cut(s) | 81 |
| Hin1II | CATG | 4 cut(s) | 65, 200, 235, 324 |
| Hin6I | GCGC | 1 cut(s) | 226 |
| HinP1I | GCGC | 1 cut(s) | 226 |
| HinfI | GANTC | 5 cut(s) | 31, 171, 182, 290, 303 |
| Hpy188I | TCNGA | 2 cut(s) | 168, 256 |
| Hpy188III | TCNNGA | 4 cut(s) | 23, 98, 287, 300 |
| Hpy99I | CGWCG | 1 cut(s) | 207 |
| HpyAV | CCTTC | 1 cut(s) | 112 |
| HpyCH4IV | ACGT | 1 cut(s) | 81 |
| HpyCH4V | TGCA | 3 cut(s) | 46, 231, 320 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 55, 58 |
| HpyF3I | CTNAG | 2 cut(s) | 186, 253 |
| HpySE526I | ACGT | 1 cut(s) | 81 |
| Hsp92I | GRCGYC | 1 cut(s) | 81 |
| Hsp92II | CATG | 4 cut(s) | 65, 200, 235, 324 |
| HspAI | GCGC | 1 cut(s) | 226 |
| Kzo9I | GATC | 2 cut(s) | 136, 206 |
| LpnPI | CCDG | 2 cut(s) | 40, 74 |
| Lsp1109I | GCAGC | 4 cut(s) | 4, 58, 70, 215 |
| MaeI | CTAG | 1 cut(s) | 287 |
| MaeII | ACGT | 1 cut(s) | 81 |
| MaeIII | GTNAC | 1 cut(s) | 77 |
| MalI | GATC | 2 cut(s) | 138, 208 |
| MboI | GATC | 2 cut(s) | 136, 206 |
| MboII | GAAGA | 2 cut(s) | 127, 298 |
| MhlI | GDGCHC | 2 cut(s) | 43, 125 |
| MlsI | TGGCCA | 1 cut(s) | 236 |
| MluCI | AATT | 1 cut(s) | 262 |
| MluNI | TGGCCA | 1 cut(s) | 236 |
| MlyI | GAGTC | 1 cut(s) | 180 |
| MnlI | CCTC | 5 cut(s) | 142, 154, 262, 294, 335 |
| Mox20I | TGGCCA | 1 cut(s) | 236 |
| MscI | TGGCCA | 1 cut(s) | 236 |
| Msp20I | TGGCCA | 1 cut(s) | 236 |
| MspA1I | CMGCKG | 1 cut(s) | 49 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 55, 58 |
| NdeII | GATC | 2 cut(s) | 136, 206 |
| NlaIII | CATG | 4 cut(s) | 65, 200, 235, 324 |
| NmuCI | GTSAC | 1 cut(s) | 77 |
| NspI | RCATGY | 2 cut(s) | 65, 324 |
| PaeI | GCATGC | 1 cut(s) | 324 |
| PfeI | GAWTC | 4 cut(s) | 31, 182, 290, 303 |
| PkrI | GCNGC | 5 cut(s) | 19, 48, 51, 60, 230 |
| PleI | GAGTC | 1 cut(s) | 179 |
| PpsI | GAGTC | 1 cut(s) | 179 |
| PstI | CTGCAG | 1 cut(s) | 48 |
| SatI | GCNGC | 5 cut(s) | 18, 47, 50, 59, 229 |
| Sau3AI | GATC | 2 cut(s) | 136, 206 |
| SchI | GAGTC | 1 cut(s) | 180 |
| SduI | GDGCHC | 2 cut(s) | 43, 125 |
| SetI | ASST | 5 cut(s) | 84, 93, 113, 192, 286 |
| SfcI | CTRYAG | 2 cut(s) | 44, 86 |
| SphI | GCATGC | 1 cut(s) | 324 |
| Sse9I | AATT | 1 cut(s) | 262 |
| SsiI | CCGC | 1 cut(s) | 49 |
| SspI | AATATT | 1 cut(s) | 217 |
| SspMI | CTAG | 1 cut(s) | 287 |
| TaiI | ACGT | 1 cut(s) | 84 |
| TaqI | TCGA | 2 cut(s) | 205, 299 |
| TasI | AATT | 1 cut(s) | 262 |
| TauI | GCSGC | 1 cut(s) | 52 |
| TfiI | GAWTC | 4 cut(s) | 31, 182, 290, 303 |
| TscAI | CASTG | 1 cut(s) | 59 |
| TseFI | GTSAC | 1 cut(s) | 77 |
| TseI | GCWGC | 4 cut(s) | 17, 46, 58, 228 |
| Tsp45I | GTSAC | 1 cut(s) | 77 |
| TspDTI | ATGAA | 1 cut(s) | 282 |
| TspRI | CASTG | 1 cut(s) | 59 |
| XbaI | TCTAGA | 1 cut(s) | 286 |
| XceI | RCATGY | 2 cut(s) | 65, 324 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 217 |
| XspI | CTAG | 1 cut(s) | 287 |
| ZraI | GACGTC | 1 cut(s) | 82 |