Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 61 - 118 | 6.7e-07 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 148 |
| AciI | CCGC | 3 cut(s) | 53, 106, 329 |
| AcoI | YGGCCR | 2 cut(s) | 107, 250 |
| AcuI | CTGAAG | 2 cut(s) | 41, 336 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 163, 164 |
| AgsI | TTSAA | 3 cut(s) | 97, 259, 343 |
| AjnI | CCWGG | 1 cut(s) | 131 |
| AluBI | AGCT | 1 cut(s) | 320 |
| AluI | AGCT | 1 cut(s) | 320 |
| Alw21I | GWGCWC | 1 cut(s) | 76 |
| Alw44I | GTGCAC | 1 cut(s) | 72 |
| AoxI | GGCC | 2 cut(s) | 107, 250 |
| ApaLI | GTGCAC | 1 cut(s) | 72 |
| ApeKI | GCWGC | 2 cut(s) | 103, 114 |
| AseI | ATTAAT | 2 cut(s) | 180, 207 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 321 |
| BaeGI | GKGCMC | 1 cut(s) | 76 |
| BalI | TGGCCA | 1 cut(s) | 252 |
| Bbv12I | GWGCWC | 1 cut(s) | 76 |
| BbvI | GCAGC | 2 cut(s) | 90, 126 |
| BccI | CCATC | 2 cut(s) | 32, 182 |
| BceAI | ACGGC | 1 cut(s) | 94 |
| BciT130I | CCWGG | 1 cut(s) | 133 |
| BfaI | CTAG | 2 cut(s) | 273, 367 |
| BfuAI | ACCTGC | 1 cut(s) | 148 |
| BisI | GCNGC | 3 cut(s) | 104, 107, 115 |
| BlsI | GCNGC | 3 cut(s) | 105, 108, 116 |
| Bme1390I | CCNGG | 1 cut(s) | 133 |
| BmrFI | CCNGG | 1 cut(s) | 133 |
| BsaAI | YACGTR | 1 cut(s) | 147 |
| BsaJI | CCNNGG | 1 cut(s) | 131 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 163, 164 |
| Bse1I | ACTGG | 1 cut(s) | 253 |
| Bse3DI | GCAATG | 1 cut(s) | 231 |
| BseBI | CCWGG | 1 cut(s) | 133 |
| BseDI | CCNNGG | 1 cut(s) | 131 |
| BseGI | GGATG | 1 cut(s) | 193 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 163, 164 |
| BseMI | GCAATG | 1 cut(s) | 231 |
| BseMII | CTCAG | 1 cut(s) | 326 |
| BseNI | ACTGG | 1 cut(s) | 253 |
| BseSI | GKGCMC | 1 cut(s) | 76 |
| BseX3I | CGGCCG | 1 cut(s) | 107 |
| BseXI | GCAGC | 2 cut(s) | 90, 126 |
| BsgI | GTGCAG | 1 cut(s) | 133 |
| Bsh1285I | CGRYCG | 1 cut(s) | 110 |
| BshFI | GGCC | 2 cut(s) | 109, 252 |
| BsiEI | CGRYCG | 1 cut(s) | 110 |
| BsiHKAI | GWGCWC | 1 cut(s) | 76 |
| BslFI | GGGAC | 2 cut(s) | 140, 345 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 163, 164 |
| BsmFI | GGGAC | 2 cut(s) | 140, 345 |
| BsnI | GGCC | 2 cut(s) | 109, 252 |
| Bsp1286I | GDGCHC | 1 cut(s) | 76 |
| BspACI | CCGC | 3 cut(s) | 53, 106, 329 |
| BspANI | GGCC | 2 cut(s) | 109, 252 |
| BspCNI | CTCAG | 1 cut(s) | 327 |
| BspMI | ACCTGC | 1 cut(s) | 148 |
| BspQI | GCTCTTC | 1 cut(s) | 327 |
| BsrDI | GCAATG | 1 cut(s) | 231 |
| BsrI | ACTGG | 1 cut(s) | 253 |
| BssECI | CCNNGG | 1 cut(s) | 131 |
| Bst2UI | CCWGG | 1 cut(s) | 133 |
| Bst4CI | ACNGT | 1 cut(s) | 358 |
| Bst6I | CTCTTC | 1 cut(s) | 327 |
| BstBAI | YACGTR | 1 cut(s) | 147 |
| BstC8I | GCNNGC | 2 cut(s) | 119, 123 |
| BstDEI | CTNAG | 1 cut(s) | 335 |
| BstF5I | GGATG | 1 cut(s) | 193 |
| BstMCI | CGRYCG | 1 cut(s) | 110 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 127, 149, 242, 296, 326 |
| BstNI | CCWGG | 1 cut(s) | 133 |
| BstNSI | RCATGY | 1 cut(s) | 121 |
| BstSCI | CCNGG | 1 cut(s) | 131 |
| BstSLI | GKGCMC | 1 cut(s) | 76 |
| BstV1I | GCAGC | 2 cut(s) | 90, 126 |
| BstZI | CGGCCG | 1 cut(s) | 107 |
| BsuRI | GGCC | 2 cut(s) | 109, 252 |
| BtsCI | GGATG | 1 cut(s) | 193 |
| BveI | ACCTGC | 1 cut(s) | 148 |
| Cac8I | GCNNGC | 2 cut(s) | 119, 123 |
| CviAII | CATG | 1 cut(s) | 118 |
| CviJI | RGCY | 5 cut(s) | 109, 152, 252, 314, 320 |
| CviKI_1 | RGCY | 5 cut(s) | 109, 152, 252, 314, 320 |
| DdeI | CTNAG | 1 cut(s) | 335 |
| EaeI | YGGCCR | 2 cut(s) | 107, 250 |
| EagI | CGGCCG | 1 cut(s) | 107 |
| Eam1104I | CTCTTC | 1 cut(s) | 327 |
| EarI | CTCTTC | 1 cut(s) | 327 |
| EclXI | CGGCCG | 1 cut(s) | 107 |
| Eco52I | CGGCCG | 1 cut(s) | 107 |
| Eco57I | CTGAAG | 2 cut(s) | 41, 336 |
| EcoRII | CCWGG | 1 cut(s) | 131 |
| FaeI | CATG | 1 cut(s) | 121 |
| FaiI | YATR | 5 cut(s) | 119, 288, 306, 308, 364 |
| FaqI | GGGAC | 2 cut(s) | 140, 345 |
| FatI | CATG | 1 cut(s) | 117 |
| FauI | CCCGC | 1 cut(s) | 322 |
| FauNDI | CATATG | 1 cut(s) | 306 |
| Fnu4HI | GCNGC | 3 cut(s) | 104, 107, 115 |
| FokI | GGATG | 1 cut(s) | 200 |
| Fsp4HI | GCNGC | 3 cut(s) | 104, 107, 115 |
| FspBI | CTAG | 2 cut(s) | 273, 367 |
| GluI | GCNGC | 3 cut(s) | 104, 107, 115 |
| HaeIII | GGCC | 2 cut(s) | 109, 252 |
| Hin1II | CATG | 1 cut(s) | 121 |
| HinfI | GANTC | 1 cut(s) | 171 |
| Hpy166II | GTNNAC | 2 cut(s) | 74, 88 |
| Hpy188III | TCNNGA | 1 cut(s) | 31 |
| Hpy8I | GTNNAC | 2 cut(s) | 74, 88 |
| HpyCH4III | ACNGT | 1 cut(s) | 358 |
| HpyCH4IV | ACGT | 2 cut(s) | 79, 146 |
| HpyCH4V | TGCA | 5 cut(s) | 74, 114, 163, 266, 304 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 127, 149, 242, 296, 326 |
| HpyF3I | CTNAG | 1 cut(s) | 335 |
| HpySE526I | ACGT | 2 cut(s) | 79, 146 |
| Hsp92II | CATG | 1 cut(s) | 121 |
| LguI | GCTCTTC | 1 cut(s) | 327 |
| LpnPI | CCDG | 9 cut(s) | 16, 68, 118, 135, 145, 149, 153, 200, 266 |
| Lsp1109I | GCAGC | 2 cut(s) | 90, 126 |
| MaeI | CTAG | 2 cut(s) | 273, 367 |
| MaeII | ACGT | 2 cut(s) | 79, 146 |
| MaeIII | GTNAC | 1 cut(s) | 352 |
| MboII | GAAGA | 2 cut(s) | 180, 314 |
| MhlI | GDGCHC | 1 cut(s) | 76 |
| MlsI | TGGCCA | 1 cut(s) | 252 |
| MluCI | AATT | 1 cut(s) | 177 |
| MluNI | TGGCCA | 1 cut(s) | 252 |
| MnlI | CCTC | 4 cut(s) | 61, 185, 233, 304 |
| Mox20I | TGGCCA | 1 cut(s) | 252 |
| MroXI | GAANNNNTTC | 1 cut(s) | 321 |
| MscI | TGGCCA | 1 cut(s) | 252 |
| MseI | TTAA | 2 cut(s) | 180, 207 |
| Msp20I | TGGCCA | 1 cut(s) | 252 |
| MspR9I | CCNGG | 1 cut(s) | 133 |
| MvaI | CCWGG | 1 cut(s) | 133 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 127, 149, 242, 296, 326 |
| NdeI | CATATG | 1 cut(s) | 306 |
| NlaIII | CATG | 1 cut(s) | 121 |
| NmuCI | GTSAC | 1 cut(s) | 352 |
| NspI | RCATGY | 1 cut(s) | 121 |
| PaeI | GCATGC | 1 cut(s) | 121 |
| PciSI | GCTCTTC | 1 cut(s) | 327 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 107 |
| PdmI | GAANNNNTTC | 1 cut(s) | 321 |
| PfeI | GAWTC | 1 cut(s) | 171 |
| PkrI | GCNGC | 3 cut(s) | 105, 108, 116 |
| Ppu21I | YACGTR | 1 cut(s) | 147 |
| PshBI | ATTAAT | 2 cut(s) | 180, 207 |
| Psp6I | CCWGG | 1 cut(s) | 131 |
| PspGI | CCWGG | 1 cut(s) | 131 |
| SapI | GCTCTTC | 1 cut(s) | 327 |
| SaqAI | TTAA | 2 cut(s) | 180, 207 |
| SatI | GCNGC | 3 cut(s) | 104, 107, 115 |
| ScrFI | CCNGG | 1 cut(s) | 133 |
| SduI | GDGCHC | 1 cut(s) | 76 |
| SetI | ASST | 6 cut(s) | 82, 142, 149, 196, 244, 322 |
| SphI | GCATGC | 1 cut(s) | 121 |
| Sse9I | AATT | 1 cut(s) | 177 |
| SsiI | CCGC | 3 cut(s) | 53, 106, 329 |
| SspI | AATATT | 1 cut(s) | 25 |
| SspMI | CTAG | 2 cut(s) | 273, 367 |
| StyD4I | CCNGG | 1 cut(s) | 131 |
| TaaI | ACNGT | 1 cut(s) | 358 |
| TaiI | ACGT | 2 cut(s) | 82, 149 |
| TasI | AATT | 1 cut(s) | 177 |
| TauI | GCSGC | 1 cut(s) | 109 |
| TfiI | GAWTC | 1 cut(s) | 171 |
| Tru1I | TTAA | 2 cut(s) | 180, 207 |
| Tru9I | TTAA | 2 cut(s) | 180, 207 |
| TseFI | GTSAC | 1 cut(s) | 352 |
| TseI | GCWGC | 2 cut(s) | 103, 114 |
| Tsp45I | GTSAC | 1 cut(s) | 352 |
| VneI | GTGCAC | 1 cut(s) | 72 |
| VspI | ATTAAT | 2 cut(s) | 180, 207 |
| XceI | RCATGY | 1 cut(s) | 121 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 206 |
| XmnI | GAANNNNTTC | 1 cut(s) | 321 |
| XspI | CTAG | 2 cut(s) | 273, 367 |