Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Cation_ATPase_N | PF00690 | 108 - 177 | 2.6e-14 | Cation transporter/ATPase, N-terminus |
| E1-E2_ATPase | PF00122 | 233 - 327 | 4.2e-20 | P-type ATPase actuator domain |
| Hydrolase | PF00702 | 451 - 772 | 1.6e-14 | haloacid dehalogenase-like hydrolase |
| Cation_ATPase | PF13246 | 491 - 662 | 7.5e-29 | P-type ATPase, cytoplasmic domain N |
| Cation_ATPase_C | PF00689 | 843 - 1012 | 5.8e-48 | Cation transporting ATPase, C-terminus |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1725, 3087 |
| AarI | CACCTGC | 1 cut(s) | 2012 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 1339, 1962 |
| AatII | GACGTC | 1 cut(s) | 495 |
| Acc36I | ACCTGC | 2 cut(s) | 2012, 2510 |
| AccB1I | GGYRCC | 3 cut(s) | 238, 714, 1151 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 322, 791 |
| AciI | CCGC | 3 cut(s) | 1208, 1586, 2508 |
| AclWI | GGATC | 2 cut(s) | 49, 1967 |
| AcoI | YGGCCR | 4 cut(s) | 117, 624, 808, 3011 |
| AcsI | RAATTY | 3 cut(s) | 375, 2141, 2942 |
| AcuI | CTGAAG | 3 cut(s) | 241, 414, 2382 |
| AcyI | GRCGYC | 3 cut(s) | 492, 715, 1007 |
| AfaI | GTAC | 9 cut(s) | 1311, 1360, 1375, 1517, 1719, 1759, 2235, 2435, 2702 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 322, 455, 694, 791, 1396, 1648, 2639 |
| AflII | CTTAAG | 1 cut(s) | 2936 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 664 |
| AjiI | CACGTC | 1 cut(s) | 1022 |
| AjnI | CCWGG | 3 cut(s) | 987, 1984, 2805 |
| AleI | CACNNNNGTG | 1 cut(s) | 2795 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 765, 797 |
| Alw21I | GWGCWC | 2 cut(s) | 2366, 2587 |
| Alw26I | GTCTC | 3 cut(s) | 436, 1325, 1905 |
| AlwI | GGATC | 2 cut(s) | 49, 1967 |
| AoxI | GGCC | 5 cut(s) | 117, 624, 808, 1520, 3011 |
| ApeKI | GCWGC | 9 cut(s) | 521, 1202, 1205, 1733, 1844, 1851, 1889, 2483, 2897 |
| ApoI | RAATTY | 3 cut(s) | 375, 2141, 2942 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 61, 93 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 399, 884, 2852 |
| AspLEI | GCGC | 4 cut(s) | 526, 717, 1927, 2653 |
| AsuHPI | GGTGA | 7 cut(s) | 395, 761, 977, 1411, 1633, 2288, 2932 |
| AsuII | TTCGAA | 1 cut(s) | 67 |
| BalI | TGGCCA | 3 cut(s) | 119, 810, 3013 |
| BanI | GGYRCC | 3 cut(s) | 238, 714, 1151 |
| BanII | GRGCYC | 2 cut(s) | 2366, 2587 |
| BauI | CACGAG | 1 cut(s) | 994 |
| BbsI | GAAGAC | 4 cut(s) | 402, 2013, 2199, 2845 |
| Bbv12I | GWGCWC | 2 cut(s) | 2366, 2587 |
| BbvI | GCAGC | 9 cut(s) | 508, 1192, 1214, 1720, 1856, 1863, 1901, 2495, 2909 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1852, 1886 |
| BciT130I | CCWGG | 3 cut(s) | 989, 1986, 2807 |
| BciVI | GTATCC | 1 cut(s) | 2085 |
| BclI | TGATCA | 5 cut(s) | 2040, 2376, 2493, 2565, 2721 |
| BcoDI | GTCTC | 3 cut(s) | 436, 1325, 1905 |
| BfaI | CTAG | 9 cut(s) | 6, 18, 59, 132, 608, 1025, 1524, 1748, 2837 |
| BfmI | CTRYAG | 4 cut(s) | 637, 1044, 1734, 2406 |
| BfoI | RGCGCY | 2 cut(s) | 718, 2654 |
| BfrI | CTTAAG | 1 cut(s) | 2936 |
| BfuAI | ACCTGC | 2 cut(s) | 2012, 2510 |
| BfuI | GTATCC | 1 cut(s) | 2085 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 116 |
| BglII | AGATCT | 1 cut(s) | 1545 |
| Bme1390I | CCNGG | 3 cut(s) | 989, 1986, 2807 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 664 |
| BmgBI | CACGTC | 1 cut(s) | 1022 |
| BmiI | GGNNCC | 6 cut(s) | 240, 427, 716, 1153, 2284, 2681 |
| BmrFI | CCNGG | 3 cut(s) | 989, 1986, 2807 |
| BmrI | ACTGGG | 1 cut(s) | 2977 |
| BmsI | GCATC | 7 cut(s) | 54, 379, 918, 1762, 1850, 1872, 2281 |
| BmuI | ACTGGG | 1 cut(s) | 2977 |
| BpiI | GAAGAC | 4 cut(s) | 402, 2013, 2199, 2845 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 126, 158, 2194, 2226 |
| BpmI | CTGGAG | 2 cut(s) | 671, 2142 |
| Bpu14I | TTCGAA | 1 cut(s) | 67 |
| BpuEI | CTTGAG | 2 cut(s) | 389, 2676 |
| BsaHI | GRCGYC | 3 cut(s) | 492, 715, 1007 |
| BsaI | GGTCTC | 3 cut(s) | 436, 1325, 1905 |
| BsaJI | CCNNGG | 2 cut(s) | 1119, 1335 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 765, 795 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 322, 455, 694, 791, 1396, 1648, 2639 |
| Bse1I | ACTGG | 4 cut(s) | 1510, 2050, 2636, 2972 |
| Bse3DI | GCAATG | 4 cut(s) | 1311, 1758, 2892, 2994 |
| BseBI | CCWGG | 3 cut(s) | 989, 1986, 2807 |
| BseDI | CCNNGG | 2 cut(s) | 1119, 1335 |
| BseGI | GGATG | 7 cut(s) | 521, 811, 933, 954, 1129, 2389, 2454 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 322, 455, 694, 791, 1396, 1648, 2639 |
| BseMI | GCAATG | 4 cut(s) | 1311, 1758, 2892, 2994 |
| BseMII | CTCAG | 6 cut(s) | 273, 890, 1870, 2073, 2110, 3076 |
| BseNI | ACTGG | 4 cut(s) | 1510, 2050, 2636, 2972 |
| BseRI | GAGGAG | 1 cut(s) | 1910 |
| BseXI | GCAGC | 9 cut(s) | 508, 1192, 1214, 1720, 1856, 1863, 1901, 2495, 2909 |
| BseYI | CCCAGC | 1 cut(s) | 3021 |
| BsgI | GTGCAG | 1 cut(s) | 107 |
| BshFI | GGCC | 5 cut(s) | 119, 626, 810, 1522, 3013 |
| BshNI | GGYRCC | 3 cut(s) | 238, 714, 1151 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2366, 2587 |
| BslFI | GGGAC | 3 cut(s) | 1968, 2513, 2985 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 322, 455, 694, 791, 1396, 1648, 2639 |
| BsmAI | GTCTC | 3 cut(s) | 436, 1325, 1905 |
| BsmFI | GGGAC | 3 cut(s) | 1968, 2513, 2985 |
| BsmI | GAATGC | 3 cut(s) | 103, 1635, 1868 |
| BsnI | GGCC | 5 cut(s) | 119, 626, 810, 1522, 3013 |
| Bso31I | GGTCTC | 3 cut(s) | 436, 1325, 1905 |
| Bsp119I | TTCGAA | 1 cut(s) | 67 |
| Bsp1286I | GDGCHC | 2 cut(s) | 2366, 2587 |
| Bsp1407I | TGTACA | 4 cut(s) | 1358, 1515, 1757, 2433 |
| Bsp19I | CCATGG | 1 cut(s) | 1335 |
| BspACI | CCGC | 3 cut(s) | 1208, 1586, 2508 |
| BspANI | GGCC | 5 cut(s) | 119, 626, 810, 1522, 3013 |
| BspCNI | CTCAG | 6 cut(s) | 274, 889, 1869, 2074, 2109, 3075 |
| BspHI | TCATGA | 1 cut(s) | 1591 |
| BspLI | GGNNCC | 6 cut(s) | 240, 427, 716, 1153, 2284, 2681 |
| BspMAI | CTGCAG | 1 cut(s) | 1738 |
| BspMI | ACCTGC | 2 cut(s) | 2012, 2510 |
| BspPI | GGATC | 2 cut(s) | 49, 1967 |
| BspT104I | TTCGAA | 1 cut(s) | 67 |
| BspT107I | GGYRCC | 3 cut(s) | 238, 714, 1151 |
| BspTI | CTTAAG | 1 cut(s) | 2936 |
| BspTNI | GGTCTC | 3 cut(s) | 436, 1325, 1905 |
| BsrDI | GCAATG | 4 cut(s) | 1311, 1758, 2892, 2994 |
| BsrGI | TGTACA | 4 cut(s) | 1358, 1515, 1757, 2433 |
| BsrI | ACTGG | 4 cut(s) | 1510, 2050, 2636, 2972 |
| BssECI | CCNNGG | 2 cut(s) | 1119, 1335 |
| BssNI | GRCGYC | 3 cut(s) | 492, 715, 1007 |
| BssSI | CACGAG | 1 cut(s) | 994 |
| BssT1I | CCWWGG | 1 cut(s) | 1335 |
| Bst2BI | CACGAG | 1 cut(s) | 994 |
| Bst2UI | CCWGG | 3 cut(s) | 989, 1986, 2807 |
| Bst4CI | ACNGT | 8 cut(s) | 581, 1120, 1711, 1769, 2012, 2410, 2473, 2713 |
| Bst6I | CTCTTC | 3 cut(s) | 86, 1277, 1619 |
| BstACI | GRCGYC | 3 cut(s) | 492, 715, 1007 |
| BstAFI | CTTAAG | 1 cut(s) | 2936 |
| BstAUI | TGTACA | 4 cut(s) | 1358, 1515, 1757, 2433 |
| BstBI | TTCGAA | 1 cut(s) | 67 |
| BstC8I | GCNNGC | 2 cut(s) | 30, 1849 |
| BstDEI | CTNAG | 7 cut(s) | 282, 876, 1404, 1856, 2082, 2096, 3062 |
| BstDSI | CCRYGG | 2 cut(s) | 1119, 1335 |
| BstF5I | GGATG | 7 cut(s) | 521, 811, 933, 954, 1129, 2389, 2454 |
| BstH2I | RGCGCY | 2 cut(s) | 718, 2654 |
| BstHHI | GCGC | 4 cut(s) | 526, 717, 1927, 2653 |
| BstMAI | GTCTC | 3 cut(s) | 436, 1325, 1905 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 116, 984, 1301, 1860, 2402, 2516 |
| BstNI | CCWGG | 3 cut(s) | 989, 1986, 2807 |
| BstNSI | RCATGY | 2 cut(s) | 32, 2116 |
| BstSCI | CCNGG | 3 cut(s) | 987, 1984, 2805 |
| BstSFI | CTRYAG | 4 cut(s) | 637, 1044, 1734, 2406 |
| BstV1I | GCAGC | 9 cut(s) | 508, 1192, 1214, 1720, 1856, 1863, 1901, 2495, 2909 |
| BstV2I | GAAGAC | 4 cut(s) | 402, 2013, 2199, 2845 |
| BstX2I | RGATCY | 2 cut(s) | 1545, 1972 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3021 |
| BstYI | RGATCY | 2 cut(s) | 1545, 1972 |
| BsuI | GTATCC | 1 cut(s) | 2085 |
| BsuRI | GGCC | 5 cut(s) | 119, 626, 810, 1522, 3013 |
| BtgI | CCRYGG | 2 cut(s) | 1119, 1335 |
| BtgZI | GCGATG | 1 cut(s) | 1849 |
| BtrI | CACGTC | 1 cut(s) | 1022 |
| BtsCI | GGATG | 7 cut(s) | 521, 811, 933, 954, 1129, 2389, 2454 |
| BtsI | GCAGTG | 2 cut(s) | 2061, 2274 |
| BtsIMutI | CAGTG | 7 cut(s) | 279, 2043, 2061, 2274, 2469, 2643, 2757 |
| BveI | ACCTGC | 2 cut(s) | 2012, 2510 |
| Cac8I | GCNNGC | 2 cut(s) | 30, 1849 |
| CciI | TCATGA | 1 cut(s) | 1591 |
| CfoI | GCGC | 4 cut(s) | 526, 717, 1927, 2653 |
| CseI | GACGC | 2 cut(s) | 254, 1015 |
| Csp6I | GTAC | 9 cut(s) | 1310, 1359, 1374, 1516, 1718, 1758, 2234, 2434, 2701 |
| CviQI | GTAC | 9 cut(s) | 1310, 1359, 1374, 1516, 1718, 1758, 2234, 2434, 2701 |
| DdeI | CTNAG | 7 cut(s) | 282, 876, 1404, 1856, 2082, 2096, 3062 |
| DinI | GGCGCC | 1 cut(s) | 716 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1339, 1962 |
| DriI | GACNNNNNGTC | 1 cut(s) | 664 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1339, 1962 |
| EaeI | YGGCCR | 4 cut(s) | 117, 624, 808, 3011 |
| Eam1104I | CTCTTC | 3 cut(s) | 86, 1277, 1619 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 664 |
| EarI | CTCTTC | 3 cut(s) | 86, 1277, 1619 |
| Ecl136II | GAGCTC | 2 cut(s) | 2364, 2585 |
| Eco130I | CCWWGG | 1 cut(s) | 1335 |
| Eco147I | AGGCCT | 1 cut(s) | 1522 |
| Eco24I | GRGCYC | 2 cut(s) | 2366, 2587 |
| Eco31I | GGTCTC | 3 cut(s) | 436, 1325, 1905 |
| Eco53kI | GAGCTC | 2 cut(s) | 2364, 2585 |
| Eco57I | CTGAAG | 3 cut(s) | 241, 414, 2382 |
| EcoICRI | GAGCTC | 2 cut(s) | 2364, 2585 |
| EcoRI | GAATTC | 1 cut(s) | 375 |
| EcoRII | CCWGG | 3 cut(s) | 987, 1984, 2805 |
| EcoT14I | CCWWGG | 1 cut(s) | 1335 |
| EcoT22I | ATGCAT | 2 cut(s) | 1865, 2990 |
| EcoT38I | GRGCYC | 2 cut(s) | 2366, 2587 |
| EgeI | GGCGCC | 1 cut(s) | 716 |
| EheI | GGCGCC | 1 cut(s) | 716 |
| ErhI | CCWWGG | 1 cut(s) | 1335 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2837, 2869 |
| FaqI | GGGAC | 3 cut(s) | 1968, 2513, 2985 |
| FauNDI | CATATG | 1 cut(s) | 590 |
| FbaI | TGATCA | 5 cut(s) | 2040, 2376, 2493, 2565, 2721 |
| FokI | GGATG | 7 cut(s) | 528, 818, 940, 961, 1136, 2396, 2441 |
| FriOI | GRGCYC | 2 cut(s) | 2366, 2587 |
| FspBI | CTAG | 9 cut(s) | 6, 18, 59, 132, 608, 1025, 1524, 1748, 2837 |
| GlaI | GCGC | 4 cut(s) | 525, 716, 1926, 2652 |
| GsaI | CCCAGC | 1 cut(s) | 3025 |
| GsuI | CTGGAG | 2 cut(s) | 671, 2142 |
| HaeII | RGCGCY | 2 cut(s) | 718, 2654 |
| HaeIII | GGCC | 5 cut(s) | 119, 626, 810, 1522, 3013 |
| HgaI | GACGC | 2 cut(s) | 254, 1015 |
| HhaI | GCGC | 4 cut(s) | 526, 717, 1927, 2653 |
| Hin1I | GRCGYC | 3 cut(s) | 492, 715, 1007 |
| Hin6I | GCGC | 4 cut(s) | 524, 715, 1925, 2651 |
| HinP1I | GCGC | 4 cut(s) | 524, 715, 1925, 2651 |
| HindIII | AAGCTT | 2 cut(s) | 1440, 2222 |
| HphI | GGTGA | 7 cut(s) | 395, 761, 977, 1411, 1633, 2288, 2932 |
| Hpy166II | GTNNAC | 5 cut(s) | 1516, 1758, 2029, 2434, 2560 |
| Hpy188I | TCNGA | 7 cut(s) | 879, 927, 1380, 1859, 2120, 2229, 2368 |
| Hpy8I | GTNNAC | 5 cut(s) | 1516, 1758, 2029, 2434, 2560 |
| HpyCH4III | ACNGT | 8 cut(s) | 581, 1120, 1711, 1769, 2012, 2410, 2473, 2713 |
| HpyCH4IV | ACGT | 4 cut(s) | 84, 492, 1021, 1672 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 116, 984, 1301, 1860, 2402, 2516 |
| HpyF3I | CTNAG | 7 cut(s) | 282, 876, 1404, 1856, 2082, 2096, 3062 |
| HpySE526I | ACGT | 4 cut(s) | 84, 492, 1021, 1672 |
| Hsp92I | GRCGYC | 3 cut(s) | 492, 715, 1007 |
| HspAI | GCGC | 4 cut(s) | 524, 715, 1925, 2651 |
| KasI | GGCGCC | 1 cut(s) | 714 |
| Ksp22I | TGATCA | 5 cut(s) | 2040, 2376, 2493, 2565, 2721 |
| LmnI | GCTCC | 6 cut(s) | 42, 318, 1730, 1897, 2120, 2582 |
| Lsp1109I | GCAGC | 9 cut(s) | 508, 1192, 1214, 1720, 1856, 1863, 1901, 2495, 2909 |
| LweI | GCATC | 7 cut(s) | 54, 379, 918, 1762, 1850, 1872, 2281 |
| MaeI | CTAG | 9 cut(s) | 6, 18, 59, 132, 608, 1025, 1524, 1748, 2837 |
| MaeII | ACGT | 4 cut(s) | 84, 492, 1021, 1672 |
| MfeI | CAATTG | 2 cut(s) | 1215, 3015 |
| MflI | RGATCY | 2 cut(s) | 1545, 1972 |
| MhlI | GDGCHC | 2 cut(s) | 2366, 2587 |
| MlsI | TGGCCA | 3 cut(s) | 119, 810, 3013 |
| MluNI | TGGCCA | 3 cut(s) | 119, 810, 3013 |
| Mly113I | GGCGCC | 1 cut(s) | 715 |
| MlyI | GAGTC | 2 cut(s) | 270, 1252 |
| MmeI | TCCRAC | 4 cut(s) | 453, 551, 905, 1583 |
| Mox20I | TGGCCA | 3 cut(s) | 119, 810, 3013 |
| Mph1103I | ATGCAT | 2 cut(s) | 1865, 2990 |
| MroXI | GAANNNNTTC | 3 cut(s) | 399, 884, 2852 |
| MscI | TGGCCA | 3 cut(s) | 119, 810, 3013 |
| MseI | TTAA | 8 cut(s) | 81, 503, 560, 1689, 1788, 1968, 2534, 2937 |
| MslI | CAYNNNNRTG | 2 cut(s) | 2036, 2795 |
| Msp20I | TGGCCA | 3 cut(s) | 119, 810, 3013 |
| MspA1I | CMGCKG | 2 cut(s) | 788, 1205 |
| MspCI | CTTAAG | 1 cut(s) | 2936 |
| MspR9I | CCNGG | 3 cut(s) | 989, 1986, 2807 |
| MunI | CAATTG | 2 cut(s) | 1215, 3015 |
| Mva1269I | GAATGC | 3 cut(s) | 103, 1635, 1868 |
| MvaI | CCWGG | 3 cut(s) | 989, 1986, 2807 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 116, 984, 1301, 1860, 2402, 2516 |
| NarI | GGCGCC | 1 cut(s) | 715 |
| NcoI | CCATGG | 1 cut(s) | 1335 |
| NdeI | CATATG | 1 cut(s) | 590 |
| NlaIV | GGNNCC | 6 cut(s) | 240, 427, 716, 1153, 2284, 2681 |
| NmuCI | GTSAC | 7 cut(s) | 493, 851, 934, 1255, 1399, 2269, 2755 |
| NsiI | ATGCAT | 2 cut(s) | 1865, 2990 |
| NspI | RCATGY | 2 cut(s) | 32, 2116 |
| NspV | TTCGAA | 1 cut(s) | 67 |
| OliI | CACNNNNGTG | 1 cut(s) | 2795 |
| PaeI | GCATGC | 1 cut(s) | 32 |
| PagI | TCATGA | 1 cut(s) | 1591 |
| PaqCI | CACCTGC | 1 cut(s) | 2012 |
| PceI | AGGCCT | 1 cut(s) | 1522 |
| PctI | GAATGC | 3 cut(s) | 103, 1635, 1868 |
| PdmI | GAANNNNTTC | 3 cut(s) | 399, 884, 2852 |
| PfeI | GAWTC | 8 cut(s) | 227, 543, 830, 880, 1424, 1532, 2335, 2889 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 322, 791 |
| PfoI | TCCNGGA | 1 cut(s) | 1984 |
| PleI | GAGTC | 2 cut(s) | 270, 1252 |
| PluTI | GGCGCC | 1 cut(s) | 718 |
| PpsI | GAGTC | 2 cut(s) | 270, 1252 |
| PsiI | TTATAA | 2 cut(s) | 1725, 3087 |
| Psp124BI | GAGCTC | 2 cut(s) | 2366, 2587 |
| Psp6I | CCWGG | 3 cut(s) | 987, 1984, 2805 |
| PspFI | CCCAGC | 1 cut(s) | 3021 |
| PspGI | CCWGG | 3 cut(s) | 987, 1984, 2805 |
| PspN4I | GGNNCC | 6 cut(s) | 240, 427, 716, 1153, 2284, 2681 |
| PstI | CTGCAG | 1 cut(s) | 1738 |
| PsuI | RGATCY | 2 cut(s) | 1545, 1972 |
| PvuII | CAGCTG | 2 cut(s) | 788, 1205 |
| RsaI | GTAC | 9 cut(s) | 1311, 1360, 1375, 1517, 1719, 1759, 2235, 2435, 2702 |
| RsaNI | GTAC | 9 cut(s) | 1310, 1359, 1374, 1516, 1718, 1758, 2234, 2434, 2701 |
| RseI | CAYNNNNRTG | 2 cut(s) | 2036, 2795 |
| SacI | GAGCTC | 2 cut(s) | 2366, 2587 |
| SaqAI | TTAA | 8 cut(s) | 81, 503, 560, 1689, 1788, 1968, 2534, 2937 |
| SchI | GAGTC | 2 cut(s) | 270, 1252 |
| ScrFI | CCNGG | 3 cut(s) | 989, 1986, 2807 |
| SduI | GDGCHC | 2 cut(s) | 2366, 2587 |
| SfaNI | GCATC | 7 cut(s) | 54, 379, 918, 1762, 1850, 1872, 2281 |
| SfcI | CTRYAG | 4 cut(s) | 637, 1044, 1734, 2406 |
| SfoI | GGCGCC | 1 cut(s) | 716 |
| SfuI | TTCGAA | 1 cut(s) | 67 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 2036, 2795 |
| SmlI | CTYRAG | 3 cut(s) | 404, 2691, 2936 |
| SmoI | CTYRAG | 3 cut(s) | 404, 2691, 2936 |
| SphI | GCATGC | 1 cut(s) | 32 |
| SseBI | AGGCCT | 1 cut(s) | 1522 |
| SsiI | CCGC | 3 cut(s) | 1208, 1586, 2508 |
| SspDI | GGCGCC | 1 cut(s) | 714 |
| SspMI | CTAG | 9 cut(s) | 6, 18, 59, 132, 608, 1025, 1524, 1748, 2837 |
| SstI | GAGCTC | 2 cut(s) | 2366, 2587 |
| StuI | AGGCCT | 1 cut(s) | 1522 |
| StyD4I | CCNGG | 3 cut(s) | 987, 1984, 2805 |
| StyI | CCWWGG | 1 cut(s) | 1335 |
| TaaI | ACNGT | 8 cut(s) | 581, 1120, 1711, 1769, 2012, 2410, 2473, 2713 |
| TaiI | ACGT | 4 cut(s) | 87, 495, 1024, 1675 |
| TaqI | TCGA | 7 cut(s) | 48, 67, 354, 728, 1099, 1470, 2139 |
| TatI | WGTACW | 5 cut(s) | 1358, 1515, 1717, 1757, 2433 |
| TauI | GCSGC | 1 cut(s) | 2510 |
| TfiI | GAWTC | 8 cut(s) | 227, 543, 830, 880, 1424, 1532, 2335, 2889 |
| Tru1I | TTAA | 8 cut(s) | 81, 503, 560, 1689, 1788, 1968, 2534, 2937 |
| Tru9I | TTAA | 8 cut(s) | 81, 503, 560, 1689, 1788, 1968, 2534, 2937 |
| TscAI | CASTG | 7 cut(s) | 286, 2050, 2068, 2274, 2476, 2643, 2764 |
| TseFI | GTSAC | 7 cut(s) | 493, 851, 934, 1255, 1399, 2269, 2755 |
| TseI | GCWGC | 9 cut(s) | 521, 1202, 1205, 1733, 1844, 1851, 1889, 2483, 2897 |
| Tsp45I | GTSAC | 7 cut(s) | 493, 851, 934, 1255, 1399, 2269, 2755 |
| TspGWI | ACGGA | 1 cut(s) | 1327 |
| TspRI | CASTG | 7 cut(s) | 286, 2050, 2068, 2274, 2476, 2643, 2764 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 322, 791 |
| Vha464I | CTTAAG | 1 cut(s) | 2936 |
| XapI | RAATTY | 3 cut(s) | 375, 2141, 2942 |
| XbaI | TCTAGA | 2 cut(s) | 131, 1024 |
| XceI | RCATGY | 2 cut(s) | 32, 2116 |
| XmnI | GAANNNNTTC | 3 cut(s) | 399, 884, 2852 |
| XspI | CTAG | 9 cut(s) | 6, 18, 59, 132, 608, 1025, 1524, 1748, 2837 |
| ZraI | GACGTC | 1 cut(s) | 493 |
| Zsp2I | ATGCAT | 2 cut(s) | 1865, 2990 |