Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1757 |
| AatII | GACGTC | 1 cut(s) | 1727 |
| Acc16I | TGCGCA | 1 cut(s) | 1635 |
| AccB1I | GGYRCC | 1 cut(s) | 1841 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1383 |
| AccI | GTMKAC | 2 cut(s) | 697, 709 |
| AciI | CCGC | 3 cut(s) | 326, 1203, 1481 |
| AclI | AACGTT | 1 cut(s) | 493 |
| AclWI | GGATC | 2 cut(s) | 959, 1712 |
| AcsI | RAATTY | 5 cut(s) | 312, 336, 899, 1394, 1471 |
| AcuI | CTGAAG | 3 cut(s) | 112, 1373, 1485 |
| AcyI | GRCGYC | 1 cut(s) | 1724 |
| AfaI | GTAC | 5 cut(s) | 61, 1078, 1296, 1590, 1755 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1291, 1383, 1467 |
| AflII | CTTAAG | 1 cut(s) | 1856 |
| AgeI | ACCGGT | 1 cut(s) | 1838 |
| AgsI | TTSAA | 9 cut(s) | 92, 532, 1130, 1226, 1231, 1265, 1400, 1648, 1784 |
| AjiI | CACGTC | 1 cut(s) | 1831 |
| AjnI | CCWGG | 2 cut(s) | 112, 942 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 648, 680 |
| Alw21I | GWGCWC | 1 cut(s) | 744 |
| Alw26I | GTCTC | 1 cut(s) | 678 |
| AlwI | GGATC | 2 cut(s) | 959, 1712 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1463 |
| Ama87I | CYCGRG | 1 cut(s) | 1814 |
| AoxI | GGCC | 4 cut(s) | 30, 171, 1549, 1818 |
| ApeKI | GCWGC | 4 cut(s) | 80, 157, 1163, 1561 |
| ApoI | RAATTY | 5 cut(s) | 312, 336, 899, 1394, 1471 |
| AsiGI | ACCGGT | 1 cut(s) | 1838 |
| AspLEI | GCGC | 2 cut(s) | 358, 1636 |
| AspS9I | GGNCC | 3 cut(s) | 4, 1094, 1692 |
| AsuC2I | CCSGG | 2 cut(s) | 714, 1478 |
| AsuHPI | GGTGA | 6 cut(s) | 152, 413, 680, 907, 1030, 1274 |
| AvaI | CYCGRG | 1 cut(s) | 1814 |
| AvaII | GGWCC | 3 cut(s) | 4, 1094, 1692 |
| BanI | GGYRCC | 1 cut(s) | 1841 |
| BanII | GRGCYC | 2 cut(s) | 744, 872 |
| BbsI | GAAGAC | 2 cut(s) | 776, 1833 |
| Bbv12I | GWGCWC | 1 cut(s) | 744 |
| BbvCI | CCTCAGC | 1 cut(s) | 1168 |
| BbvI | GCAGC | 4 cut(s) | 67, 169, 1150, 1548 |
| BccI | CCATC | 5 cut(s) | 109, 116, 517, 570, 1128 |
| BceAI | ACGGC | 1 cut(s) | 1829 |
| BciT130I | CCWGG | 2 cut(s) | 114, 944 |
| BclI | TGATCA | 2 cut(s) | 342, 1279 |
| BcnI | CCSGG | 2 cut(s) | 714, 1478 |
| BcoDI | GTCTC | 1 cut(s) | 678 |
| BfaI | CTAG | 2 cut(s) | 554, 1407 |
| BfmI | CTRYAG | 1 cut(s) | 701 |
| BfrI | CTTAAG | 1 cut(s) | 1856 |
| BisI | GCNGC | 6 cut(s) | 81, 158, 1164, 1204, 1482, 1562 |
| BlpI | GCTNAGC | 1 cut(s) | 1518 |
| BlsI | GCNGC | 6 cut(s) | 82, 159, 1165, 1205, 1483, 1563 |
| Bme1390I | CCNGG | 4 cut(s) | 114, 714, 944, 1478 |
| Bme18I | GGWCC | 3 cut(s) | 4, 1094, 1692 |
| BmeT110I | CYCGRG | 1 cut(s) | 1814 |
| BmgBI | CACGTC | 1 cut(s) | 1831 |
| BmgT120I | GGNCC | 3 cut(s) | 4, 1094, 1692 |
| BmiI | GGNNCC | 4 cut(s) | 6, 869, 1095, 1843 |
| BmrFI | CCNGG | 4 cut(s) | 114, 714, 944, 1478 |
| BmsI | GCATC | 5 cut(s) | 106, 153, 739, 1074, 1621 |
| BpiI | GAAGAC | 2 cut(s) | 776, 1833 |
| BpmI | CTGGAG | 1 cut(s) | 203 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1168 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1518 |
| BpuEI | CTTGAG | 2 cut(s) | 250, 1628 |
| BpuMI | CCSGG | 2 cut(s) | 714, 1478 |
| BsaHI | GRCGYC | 1 cut(s) | 1724 |
| BsaJI | CCNNGG | 6 cut(s) | 112, 399, 924, 942, 1080, 1815 |
| BsaWI | WCCGGW | 1 cut(s) | 1838 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1027, 1057 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1291, 1383, 1467 |
| Bse118I | RCCGGY | 1 cut(s) | 1838 |
| Bse1I | ACTGG | 2 cut(s) | 1454, 1596 |
| Bse3DI | GCAATG | 1 cut(s) | 1568 |
| BseBI | CCWGG | 2 cut(s) | 114, 944 |
| BseDI | CCNNGG | 6 cut(s) | 112, 399, 924, 942, 1080, 1815 |
| BseGI | GGATG | 7 cut(s) | 70, 97, 528, 581, 634, 1675, 1867 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1291, 1383, 1467 |
| BseMI | GCAATG | 1 cut(s) | 1568 |
| BseMII | CTCAG | 2 cut(s) | 1182, 1518 |
| BseNI | ACTGG | 2 cut(s) | 1454, 1596 |
| BseRI | GAGGAG | 3 cut(s) | 83, 706, 1784 |
| BseXI | GCAGC | 4 cut(s) | 67, 169, 1150, 1548 |
| BseYI | CCCAGC | 1 cut(s) | 486 |
| BsgI | GTGCAG | 1 cut(s) | 66 |
| BshFI | GGCC | 4 cut(s) | 32, 173, 1551, 1820 |
| BshNI | GGYRCC | 1 cut(s) | 1841 |
| BshTI | ACCGGT | 1 cut(s) | 1838 |
| BsiHKAI | GWGCWC | 1 cut(s) | 744 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1814 |
| BsiSI | CCGG | 3 cut(s) | 713, 1477, 1839 |
| BslFI | GGGAC | 1 cut(s) | 1107 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1291, 1383, 1467 |
| BsmAI | GTCTC | 1 cut(s) | 678 |
| BsmFI | GGGAC | 1 cut(s) | 1107 |
| BsmI | GAATGC | 1 cut(s) | 1654 |
| BsnI | GGCC | 4 cut(s) | 32, 173, 1551, 1820 |
| BsoBI | CYCGRG | 1 cut(s) | 1814 |
| Bsp1286I | GDGCHC | 2 cut(s) | 744, 872 |
| Bsp143I | GATC | 6 cut(s) | 72, 342, 964, 1279, 1717, 1764 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1518 |
| Bsp19I | CCATGG | 1 cut(s) | 924 |
| BspACI | CCGC | 3 cut(s) | 326, 1203, 1481 |
| BspANI | GGCC | 4 cut(s) | 32, 173, 1551, 1820 |
| BspCNI | CTCAG | 2 cut(s) | 1181, 1519 |
| BspHI | TCATGA | 1 cut(s) | 1761 |
| BspLI | GGNNCC | 4 cut(s) | 6, 869, 1095, 1843 |
| BspMAI | CTGCAG | 1 cut(s) | 705 |
| BspPI | GGATC | 2 cut(s) | 959, 1712 |
| BspQI | GCTCTTC | 1 cut(s) | 732 |
| BspT107I | GGYRCC | 1 cut(s) | 1841 |
| BspTI | CTTAAG | 1 cut(s) | 1856 |
| BsrDI | GCAATG | 1 cut(s) | 1568 |
| BsrFI | RCCGGY | 1 cut(s) | 1838 |
| BsrI | ACTGG | 2 cut(s) | 1454, 1596 |
| BssAI | RCCGGY | 1 cut(s) | 1838 |
| BssECI | CCNNGG | 6 cut(s) | 112, 399, 924, 942, 1080, 1815 |
| BssMI | GATC | 6 cut(s) | 72, 342, 964, 1279, 1717, 1764 |
| BssNAI | GTATAC | 1 cut(s) | 698 |
| BssNI | GRCGYC | 1 cut(s) | 1724 |
| BssT1I | CCWWGG | 3 cut(s) | 399, 924, 1080 |
| Bst1107I | GTATAC | 1 cut(s) | 698 |
| Bst2UI | CCWGG | 2 cut(s) | 114, 944 |
| Bst4CI | ACNGT | 1 cut(s) | 1074 |
| Bst6I | CTCTTC | 3 cut(s) | 691, 732, 1744 |
| BstACI | GRCGYC | 1 cut(s) | 1724 |
| BstAFI | CTTAAG | 1 cut(s) | 1856 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 163, 364, 1570 |
| BstDEI | CTNAG | 5 cut(s) | 873, 1168, 1370, 1518, 1527 |
| BstDSI | CCRYGG | 1 cut(s) | 924 |
| BstF5I | GGATG | 7 cut(s) | 70, 97, 528, 581, 634, 1675, 1867 |
| BstHHI | GCGC | 2 cut(s) | 358, 1636 |
| BstKTI | GATC | 6 cut(s) | 75, 345, 967, 1282, 1720, 1767 |
| BstMAI | GTCTC | 1 cut(s) | 678 |
| BstMBI | GATC | 6 cut(s) | 72, 342, 964, 1279, 1717, 1764 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 163, 364, 563, 1169, 1570 |
| BstNI | CCWGG | 2 cut(s) | 114, 944 |
| BstSCI | CCNGG | 4 cut(s) | 112, 712, 942, 1476 |
| BstSFI | CTRYAG | 1 cut(s) | 701 |
| BstV1I | GCAGC | 4 cut(s) | 67, 169, 1150, 1548 |
| BstV2I | GAAGAC | 2 cut(s) | 776, 1833 |
| BstX2I | RGATCY | 1 cut(s) | 964 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1449 |
| BstYI | RGATCY | 1 cut(s) | 964 |
| BstZ17I | GTATAC | 1 cut(s) | 698 |
| BsuRI | GGCC | 4 cut(s) | 32, 173, 1551, 1820 |
| BtgI | CCRYGG | 1 cut(s) | 924 |
| BtrI | CACGTC | 1 cut(s) | 1831 |
| BtsCI | GGATG | 7 cut(s) | 70, 97, 528, 581, 634, 1675, 1867 |
| BtsIMutI | CAGTG | 1 cut(s) | 1447 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1463 |
| CciI | TCATGA | 1 cut(s) | 1761 |
| CfoI | GCGC | 2 cut(s) | 358, 1636 |
| Cfr10I | RCCGGY | 1 cut(s) | 1838 |
| Cfr13I | GGNCC | 3 cut(s) | 4, 1094, 1692 |
| CseI | GACGC | 1 cut(s) | 1280 |
| Csp6I | GTAC | 5 cut(s) | 60, 1077, 1295, 1589, 1754 |
| CspAI | ACCGGT | 1 cut(s) | 1838 |
| CviQI | GTAC | 5 cut(s) | 60, 1077, 1295, 1589, 1754 |
| DdeI | CTNAG | 5 cut(s) | 873, 1168, 1370, 1518, 1527 |
| DpnI | GATC | 6 cut(s) | 74, 344, 966, 1281, 1719, 1766 |
| DpnII | GATC | 6 cut(s) | 72, 342, 964, 1279, 1717, 1764 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1757 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1757 |
| Eam1104I | CTCTTC | 3 cut(s) | 691, 732, 1744 |
| EarI | CTCTTC | 3 cut(s) | 691, 732, 1744 |
| Ecl136II | GAGCTC | 1 cut(s) | 742 |
| Eco130I | CCWWGG | 3 cut(s) | 399, 924, 1080 |
| Eco147I | AGGCCT | 1 cut(s) | 1551 |
| Eco24I | GRGCYC | 2 cut(s) | 744, 872 |
| Eco32I | GATATC | 1 cut(s) | 632 |
| Eco47I | GGWCC | 3 cut(s) | 4, 1094, 1692 |
| Eco53kI | GAGCTC | 1 cut(s) | 742 |
| Eco57I | CTGAAG | 3 cut(s) | 112, 1373, 1485 |
| Eco88I | CYCGRG | 1 cut(s) | 1814 |
| EcoICRI | GAGCTC | 1 cut(s) | 742 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1692 |
| EcoRII | CCWGG | 2 cut(s) | 112, 942 |
| EcoRV | GATATC | 1 cut(s) | 632 |
| EcoT14I | CCWWGG | 3 cut(s) | 399, 924, 1080 |
| EcoT22I | ATGCAT | 2 cut(s) | 20, 99 |
| EcoT38I | GRGCYC | 2 cut(s) | 744, 872 |
| ErhI | CCWWGG | 3 cut(s) | 399, 924, 1080 |
| FaqI | GGGAC | 1 cut(s) | 1107 |
| FauI | CCCGC | 1 cut(s) | 319 |
| FbaI | TGATCA | 2 cut(s) | 342, 1279 |
| FblI | GTMKAC | 2 cut(s) | 697, 709 |
| Fnu4HI | GCNGC | 6 cut(s) | 81, 158, 1164, 1204, 1482, 1562 |
| FokI | GGATG | 7 cut(s) | 77, 84, 535, 588, 621, 1682, 1874 |
| FriOI | GRGCYC | 2 cut(s) | 744, 872 |
| Fsp4HI | GCNGC | 6 cut(s) | 81, 158, 1164, 1204, 1482, 1562 |
| FspAI | RTGCGCAY | 1 cut(s) | 1635 |
| FspBI | CTAG | 2 cut(s) | 554, 1407 |
| FspI | TGCGCA | 1 cut(s) | 1635 |
| GlaI | GCGC | 2 cut(s) | 357, 1635 |
| GluI | GCNGC | 6 cut(s) | 81, 158, 1164, 1204, 1482, 1562 |
| GsaI | CCCAGC | 1 cut(s) | 490 |
| GsuI | CTGGAG | 1 cut(s) | 203 |
| HaeIII | GGCC | 4 cut(s) | 32, 173, 1551, 1820 |
| HapII | CCGG | 3 cut(s) | 713, 1477, 1839 |
| HgaI | GACGC | 1 cut(s) | 1280 |
| HhaI | GCGC | 2 cut(s) | 358, 1636 |
| Hin1I | GRCGYC | 1 cut(s) | 1724 |
| Hin6I | GCGC | 2 cut(s) | 356, 1634 |
| HinP1I | GCGC | 2 cut(s) | 356, 1634 |
| HincII | GTYRAC | 1 cut(s) | 1357 |
| HindII | GTYRAC | 1 cut(s) | 1357 |
| HinfI | GANTC | 2 cut(s) | 671, 781 |
| HpaII | CCGG | 3 cut(s) | 713, 1477, 1839 |
| HphI | GGTGA | 6 cut(s) | 152, 413, 680, 907, 1030, 1274 |
| Hpy166II | GTNNAC | 6 cut(s) | 143, 698, 710, 1077, 1211, 1357 |
| Hpy188I | TCNGA | 3 cut(s) | 1465, 1722, 1769 |
| Hpy188III | TCNNGA | 7 cut(s) | 119, 130, 182, 1391, 1607, 1748, 1762 |
| Hpy8I | GTNNAC | 6 cut(s) | 143, 698, 710, 1077, 1211, 1357 |
| Hpy99I | CGWCG | 2 cut(s) | 1726, 1729 |
| HpyAV | CCTTC | 8 cut(s) | 509, 691, 802, 1009, 1295, 1460, 1541, 1705 |
| HpyCH4III | ACNGT | 1 cut(s) | 1074 |
| HpyCH4IV | ACGT | 6 cut(s) | 493, 1584, 1724, 1752, 1779, 1830 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 163, 364, 563, 1169, 1570 |
| HpyF3I | CTNAG | 5 cut(s) | 873, 1168, 1370, 1518, 1527 |
| HpySE526I | ACGT | 6 cut(s) | 493, 1584, 1724, 1752, 1779, 1830 |
| Hsp92I | GRCGYC | 1 cut(s) | 1724 |
| HspAI | GCGC | 2 cut(s) | 356, 1634 |
| Ksp22I | TGATCA | 2 cut(s) | 342, 1279 |
| Kzo9I | GATC | 6 cut(s) | 72, 342, 964, 1279, 1717, 1764 |
| LguI | GCTCTTC | 1 cut(s) | 732 |
| LmnI | GCTCC | 2 cut(s) | 867, 1112 |
| Lsp1109I | GCAGC | 4 cut(s) | 67, 169, 1150, 1548 |
| LweI | GCATC | 5 cut(s) | 106, 153, 739, 1074, 1621 |
| MaeI | CTAG | 2 cut(s) | 554, 1407 |
| MaeII | ACGT | 6 cut(s) | 493, 1584, 1724, 1752, 1779, 1830 |
| MaeIII | GTNAC | 4 cut(s) | 22, 329, 410, 1775 |
| MalI | GATC | 6 cut(s) | 74, 344, 966, 1281, 1719, 1766 |
| MboI | GATC | 6 cut(s) | 72, 342, 964, 1279, 1717, 1764 |
| MfeI | CAATTG | 1 cut(s) | 298 |
| MflI | RGATCY | 1 cut(s) | 964 |
| MhlI | GDGCHC | 2 cut(s) | 744, 872 |
| MluCI | AATT | 9 cut(s) | 298, 312, 336, 382, 899, 1226, 1394, 1471, 1491 |
| MlyI | GAGTC | 1 cut(s) | 680 |
| MmeI | TCCRAC | 2 cut(s) | 705, 1745 |
| Mph1103I | ATGCAT | 2 cut(s) | 20, 99 |
| MseI | TTAA | 9 cut(s) | 50, 189, 198, 270, 318, 620, 834, 1194, 1857 |
| MslI | CAYNNNNRTG | 1 cut(s) | 516 |
| MspCI | CTTAAG | 1 cut(s) | 1856 |
| MspI | CCGG | 3 cut(s) | 713, 1477, 1839 |
| MspR9I | CCNGG | 4 cut(s) | 114, 714, 944, 1478 |
| MunI | CAATTG | 1 cut(s) | 298 |
| Mva1269I | GAATGC | 1 cut(s) | 1654 |
| MvaI | CCWGG | 2 cut(s) | 114, 944 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 163, 364, 563, 1169, 1570 |
| NciI | CCSGG | 2 cut(s) | 714, 1478 |
| NcoI | CCATGG | 1 cut(s) | 924 |
| NdeII | GATC | 6 cut(s) | 72, 342, 964, 1279, 1717, 1764 |
| NlaIV | GGNNCC | 4 cut(s) | 6, 869, 1095, 1843 |
| NmeAIII | GCCGAG | 1 cut(s) | 1785 |
| NmuCI | GTSAC | 2 cut(s) | 410, 1775 |
| NsbI | TGCGCA | 1 cut(s) | 1635 |
| NsiI | ATGCAT | 2 cut(s) | 20, 99 |
| PagI | TCATGA | 1 cut(s) | 1761 |
| PceI | AGGCCT | 1 cut(s) | 1551 |
| PciSI | GCTCTTC | 1 cut(s) | 732 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1713, 1812 |
| PctI | GAATGC | 1 cut(s) | 1654 |
| PfeI | GAWTC | 1 cut(s) | 781 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1383 |
| PinAI | ACCGGT | 1 cut(s) | 1838 |
| PkrI | GCNGC | 6 cut(s) | 82, 159, 1165, 1205, 1483, 1563 |
| PleI | GAGTC | 1 cut(s) | 679 |
| PpsI | GAGTC | 1 cut(s) | 679 |
| PpuMI | RGGWCCY | 1 cut(s) | 1692 |
| Psp124BI | GAGCTC | 1 cut(s) | 744 |
| Psp1406I | AACGTT | 1 cut(s) | 493 |
| Psp5II | RGGWCCY | 1 cut(s) | 1692 |
| Psp6I | CCWGG | 2 cut(s) | 112, 942 |
| PspFI | CCCAGC | 1 cut(s) | 486 |
| PspGI | CCWGG | 2 cut(s) | 112, 942 |
| PspN4I | GGNNCC | 4 cut(s) | 6, 869, 1095, 1843 |
| PspPI | GGNCC | 3 cut(s) | 4, 1094, 1692 |
| PspPPI | RGGWCCY | 1 cut(s) | 1692 |
| PstI | CTGCAG | 1 cut(s) | 705 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1463 |
| PsuI | RGATCY | 1 cut(s) | 964 |
| RsaI | GTAC | 5 cut(s) | 61, 1078, 1296, 1590, 1755 |
| RsaNI | GTAC | 5 cut(s) | 60, 1077, 1295, 1589, 1754 |
| RseI | CAYNNNNRTG | 1 cut(s) | 516 |
| SacI | GAGCTC | 1 cut(s) | 744 |
| SapI | GCTCTTC | 1 cut(s) | 732 |
| SaqAI | TTAA | 9 cut(s) | 50, 189, 198, 270, 318, 620, 834, 1194, 1857 |
| SatI | GCNGC | 6 cut(s) | 81, 158, 1164, 1204, 1482, 1562 |
| Sau3AI | GATC | 6 cut(s) | 72, 342, 964, 1279, 1717, 1764 |
| Sau96I | GGNCC | 3 cut(s) | 4, 1094, 1692 |
| SchI | GAGTC | 1 cut(s) | 680 |
| ScrFI | CCNGG | 4 cut(s) | 114, 714, 944, 1478 |
| SduI | GDGCHC | 2 cut(s) | 744, 872 |
| SfaNI | GCATC | 5 cut(s) | 106, 153, 739, 1074, 1621 |
| SfcI | CTRYAG | 1 cut(s) | 701 |
| SinI | GGWCC | 3 cut(s) | 4, 1094, 1692 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 516 |
| SmlI | CTYRAG | 3 cut(s) | 229, 1607, 1856 |
| SmoI | CTYRAG | 3 cut(s) | 229, 1607, 1856 |
| Sse9I | AATT | 9 cut(s) | 298, 312, 336, 382, 899, 1226, 1394, 1471, 1491 |
| SseBI | AGGCCT | 1 cut(s) | 1551 |
| SsiI | CCGC | 3 cut(s) | 326, 1203, 1481 |
| SspI | AATATT | 1 cut(s) | 819 |
| SspMI | CTAG | 2 cut(s) | 554, 1407 |
| SstI | GAGCTC | 1 cut(s) | 744 |
| StuI | AGGCCT | 1 cut(s) | 1551 |
| StyD4I | CCNGG | 4 cut(s) | 112, 712, 942, 1476 |
| StyI | CCWWGG | 3 cut(s) | 399, 924, 1080 |
| TaaI | ACNGT | 1 cut(s) | 1074 |
| TaiI | ACGT | 6 cut(s) | 496, 1587, 1727, 1755, 1782, 1833 |
| TaqI | TCGA | 6 cut(s) | 148, 628, 689, 735, 1716, 1873 |
| TasI | AATT | 9 cut(s) | 298, 312, 336, 382, 899, 1226, 1394, 1471, 1491 |
| TauI | GCSGC | 2 cut(s) | 1206, 1484 |
| TfiI | GAWTC | 1 cut(s) | 781 |
| Tru1I | TTAA | 9 cut(s) | 50, 189, 198, 270, 318, 620, 834, 1194, 1857 |
| Tru9I | TTAA | 9 cut(s) | 50, 189, 198, 270, 318, 620, 834, 1194, 1857 |
| TscAI | CASTG | 1 cut(s) | 1454 |
| TseFI | GTSAC | 2 cut(s) | 410, 1775 |
| TseI | GCWGC | 4 cut(s) | 80, 157, 1163, 1561 |
| Tsp45I | GTSAC | 2 cut(s) | 410, 1775 |
| TspDTI | ATGAA | 7 cut(s) | 50, 395, 528, 773, 1731, 1839, 1878 |
| TspGWI | ACGGA | 2 cut(s) | 77, 666 |
| TspRI | CASTG | 1 cut(s) | 1454 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1383 |
| Vha464I | CTTAAG | 1 cut(s) | 1856 |
| VpaK11BI | GGWCC | 3 cut(s) | 4, 1094, 1692 |
| XapI | RAATTY | 5 cut(s) | 312, 336, 899, 1394, 1471 |
| XmiI | GTMKAC | 2 cut(s) | 697, 709 |
| XspI | CTAG | 2 cut(s) | 554, 1407 |
| ZraI | GACGTC | 1 cut(s) | 1725 |
| Zsp2I | ATGCAT | 2 cut(s) | 20, 99 |