Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| MFS_1 | PF07690 | 7 - 359 | 1.7e-49 | Major Facilitator Superfamily |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 505 |
| Acc36I | ACCTGC | 1 cut(s) | 413 |
| AccB1I | GGYRCC | 2 cut(s) | 116, 757 |
| AciI | CCGC | 2 cut(s) | 75, 929 |
| AclWI | GGATC | 1 cut(s) | 1137 |
| AcsI | RAATTY | 3 cut(s) | 159, 597, 911 |
| AcuI | CTGAAG | 1 cut(s) | 740 |
| AfaI | GTAC | 2 cut(s) | 407, 1057 |
| AflIII | ACRYGT | 2 cut(s) | 49, 771 |
| AgsI | TTSAA | 6 cut(s) | 548, 710, 734, 769, 862, 924 |
| AjnI | CCWGG | 2 cut(s) | 163, 1171 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 186, 218 |
| AlwI | GGATC | 1 cut(s) | 1137 |
| AoxI | GGCC | 1 cut(s) | 715 |
| ApeKI | GCWGC | 5 cut(s) | 77, 80, 176, 416, 419 |
| ApoI | RAATTY | 3 cut(s) | 159, 597, 911 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 653 |
| AspS9I | GGNCC | 3 cut(s) | 228, 256, 372 |
| AsuHPI | GGTGA | 2 cut(s) | 494, 658 |
| AvaII | GGWCC | 3 cut(s) | 228, 256, 372 |
| BanI | GGYRCC | 2 cut(s) | 116, 757 |
| BbsI | GAAGAC | 1 cut(s) | 722 |
| BbvI | GCAGC | 5 cut(s) | 64, 92, 188, 406, 428 |
| BccI | CCATC | 3 cut(s) | 338, 892, 1027 |
| BciT130I | CCWGG | 2 cut(s) | 165, 1173 |
| BfaI | CTAG | 6 cut(s) | 446, 531, 585, 843, 849, 1110 |
| BfmI | CTRYAG | 2 cut(s) | 78, 420 |
| BfuAI | ACCTGC | 1 cut(s) | 413 |
| BglII | AGATCT | 1 cut(s) | 1112 |
| BisI | GCNGC | 6 cut(s) | 78, 81, 177, 417, 420, 930 |
| BlsI | GCNGC | 6 cut(s) | 79, 82, 178, 418, 421, 931 |
| Bme1390I | CCNGG | 2 cut(s) | 165, 1173 |
| Bme18I | GGWCC | 3 cut(s) | 228, 256, 372 |
| BmgT120I | GGNCC | 3 cut(s) | 228, 256, 372 |
| BmiI | GGNNCC | 5 cut(s) | 118, 258, 357, 438, 759 |
| BmrFI | CCNGG | 2 cut(s) | 165, 1173 |
| BmrI | ACTGGG | 2 cut(s) | 1098, 1230 |
| BmsI | GCATC | 1 cut(s) | 76 |
| BmuI | ACTGGG | 2 cut(s) | 1098, 1230 |
| BpiI | GAAGAC | 1 cut(s) | 722 |
| BpmI | CTGGAG | 1 cut(s) | 186 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1128 |
| BsaJI | CCNNGG | 4 cut(s) | 409, 602, 1013, 1172 |
| BsaWI | WCCGGW | 1 cut(s) | 92 |
| Bse1I | ACTGG | 2 cut(s) | 1093, 1225 |
| Bse3DI | GCAATG | 1 cut(s) | 1005 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1128 |
| BseBI | CCWGG | 2 cut(s) | 165, 1173 |
| BseDI | CCNNGG | 4 cut(s) | 409, 602, 1013, 1172 |
| BseGI | GGATG | 2 cut(s) | 330, 408 |
| BseJI | GATNNNNATC | 1 cut(s) | 1128 |
| BseMI | GCAATG | 1 cut(s) | 1005 |
| BseNI | ACTGG | 2 cut(s) | 1093, 1225 |
| BseRI | GAGGAG | 1 cut(s) | 197 |
| BseXI | GCAGC | 5 cut(s) | 64, 92, 188, 406, 428 |
| BseYI | CCCAGC | 2 cut(s) | 980, 1064 |
| BsgI | GTGCAG | 1 cut(s) | 435 |
| BshFI | GGCC | 1 cut(s) | 717 |
| BshNI | GGYRCC | 2 cut(s) | 116, 757 |
| BsiSI | CCGG | 1 cut(s) | 93 |
| BslFI | GGGAC | 3 cut(s) | 233, 511, 757 |
| BsmFI | GGGAC | 3 cut(s) | 233, 511, 757 |
| BsnI | GGCC | 1 cut(s) | 717 |
| Bsp143I | GATC | 5 cut(s) | 377, 1081, 1112, 1129, 1209 |
| Bsp19I | CCATGG | 1 cut(s) | 602 |
| BspACI | CCGC | 2 cut(s) | 75, 929 |
| BspANI | GGCC | 1 cut(s) | 717 |
| BspHI | TCATGA | 2 cut(s) | 681, 1164 |
| BspLI | GGNNCC | 5 cut(s) | 118, 258, 357, 438, 759 |
| BspMAI | CTGCAG | 2 cut(s) | 82, 424 |
| BspMI | ACCTGC | 1 cut(s) | 413 |
| BspPI | GGATC | 1 cut(s) | 1137 |
| BspT107I | GGYRCC | 2 cut(s) | 116, 757 |
| BsrDI | GCAATG | 1 cut(s) | 1005 |
| BsrI | ACTGG | 2 cut(s) | 1093, 1225 |
| BssECI | CCNNGG | 4 cut(s) | 409, 602, 1013, 1172 |
| BssMI | GATC | 5 cut(s) | 377, 1081, 1112, 1129, 1209 |
| BssT1I | CCWWGG | 3 cut(s) | 409, 602, 1013 |
| Bst2UI | CCWGG | 2 cut(s) | 165, 1173 |
| Bst6I | CTCTTC | 1 cut(s) | 602 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 86 |
| BstDEI | CTNAG | 2 cut(s) | 555, 725 |
| BstDSI | CCRYGG | 1 cut(s) | 602 |
| BstF5I | GGATG | 2 cut(s) | 330, 408 |
| BstKTI | GATC | 5 cut(s) | 380, 1084, 1115, 1132, 1212 |
| BstMBI | GATC | 5 cut(s) | 377, 1081, 1112, 1129, 1209 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 74, 86, 890, 899, 986, 1191 |
| BstNI | CCWGG | 2 cut(s) | 165, 1173 |
| BstNSI | RCATGY | 2 cut(s) | 33, 775 |
| BstSCI | CCNGG | 2 cut(s) | 163, 1171 |
| BstSFI | CTRYAG | 2 cut(s) | 78, 420 |
| BstV1I | GCAGC | 5 cut(s) | 64, 92, 188, 406, 428 |
| BstV2I | GAAGAC | 1 cut(s) | 722 |
| BstX2I | RGATCY | 2 cut(s) | 1112, 1129 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1149 |
| BstYI | RGATCY | 2 cut(s) | 1112, 1129 |
| BsuRI | GGCC | 1 cut(s) | 717 |
| BtgI | CCRYGG | 1 cut(s) | 602 |
| BtsCI | GGATG | 2 cut(s) | 330, 408 |
| BtsI | GCAGTG | 2 cut(s) | 902, 996 |
| BtsIMutI | CAGTG | 4 cut(s) | 516, 902, 996, 1086 |
| BveI | ACCTGC | 1 cut(s) | 413 |
| CciI | TCATGA | 2 cut(s) | 681, 1164 |
| Cfr13I | GGNCC | 3 cut(s) | 228, 256, 372 |
| Csp6I | GTAC | 2 cut(s) | 406, 1056 |
| CviQI | GTAC | 2 cut(s) | 406, 1056 |
| DdeI | CTNAG | 2 cut(s) | 555, 725 |
| DpnI | GATC | 5 cut(s) | 379, 1083, 1114, 1131, 1211 |
| DpnII | GATC | 5 cut(s) | 377, 1081, 1112, 1129, 1209 |
| DraI | TTTAAA | 1 cut(s) | 619 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 505 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 505 |
| Eam1104I | CTCTTC | 1 cut(s) | 602 |
| EarI | CTCTTC | 1 cut(s) | 602 |
| Eco130I | CCWWGG | 3 cut(s) | 409, 602, 1013 |
| Eco147I | AGGCCT | 1 cut(s) | 717 |
| Eco47I | GGWCC | 3 cut(s) | 228, 256, 372 |
| Eco57I | CTGAAG | 1 cut(s) | 740 |
| EcoRII | CCWGG | 2 cut(s) | 163, 1171 |
| EcoT14I | CCWWGG | 3 cut(s) | 409, 602, 1013 |
| EcoT22I | ATGCAT | 1 cut(s) | 35 |
| ErhI | CCWWGG | 3 cut(s) | 409, 602, 1013 |
| FaqI | GGGAC | 3 cut(s) | 233, 511, 757 |
| FauNDI | CATATG | 1 cut(s) | 238 |
| Fnu4HI | GCNGC | 6 cut(s) | 78, 81, 177, 417, 420, 930 |
| FokI | GGATG | 2 cut(s) | 317, 415 |
| Fsp4HI | GCNGC | 6 cut(s) | 78, 81, 177, 417, 420, 930 |
| FspBI | CTAG | 6 cut(s) | 446, 531, 585, 843, 849, 1110 |
| GluI | GCNGC | 6 cut(s) | 78, 81, 177, 417, 420, 930 |
| GsaI | CCCAGC | 2 cut(s) | 984, 1068 |
| GsuI | CTGGAG | 1 cut(s) | 186 |
| HaeIII | GGCC | 1 cut(s) | 717 |
| HapII | CCGG | 1 cut(s) | 93 |
| HincII | GTYRAC | 1 cut(s) | 456 |
| HindII | GTYRAC | 1 cut(s) | 456 |
| HindIII | AAGCTT | 3 cut(s) | 622, 722, 1104 |
| HinfI | GANTC | 4 cut(s) | 994, 1124, 1138, 1168 |
| HpaII | CCGG | 1 cut(s) | 93 |
| HphI | GGTGA | 2 cut(s) | 494, 658 |
| Hpy166II | GTNNAC | 4 cut(s) | 155, 456, 536, 649 |
| Hpy188I | TCNGA | 2 cut(s) | 917, 1129 |
| Hpy188III | TCNNGA | 9 cut(s) | 254, 375, 682, 734, 859, 1110, 1121, 1142, 1165 |
| Hpy8I | GTNNAC | 4 cut(s) | 155, 456, 536, 649 |
| HpyAV | CCTTC | 2 cut(s) | 189, 336 |
| HpyCH4IV | ACGT | 1 cut(s) | 49 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 74, 86, 890, 899, 986, 1191 |
| HpyF3I | CTNAG | 2 cut(s) | 555, 725 |
| HpySE526I | ACGT | 1 cut(s) | 49 |
| Kzo9I | GATC | 5 cut(s) | 377, 1081, 1112, 1129, 1209 |
| LmnI | GCTCC | 2 cut(s) | 566, 1015 |
| Lsp1109I | GCAGC | 5 cut(s) | 64, 92, 188, 406, 428 |
| LweI | GCATC | 1 cut(s) | 76 |
| MaeI | CTAG | 6 cut(s) | 446, 531, 585, 843, 849, 1110 |
| MaeII | ACGT | 1 cut(s) | 49 |
| MaeIII | GTNAC | 2 cut(s) | 7, 838 |
| MalI | GATC | 5 cut(s) | 379, 1083, 1114, 1131, 1211 |
| MboI | GATC | 5 cut(s) | 377, 1081, 1112, 1129, 1209 |
| MboII | GAAGA | 4 cut(s) | 619, 722, 936, 1204 |
| MfeI | CAATTG | 1 cut(s) | 548 |
| MflI | RGATCY | 2 cut(s) | 1112, 1129 |
| MlyI | GAGTC | 1 cut(s) | 1147 |
| MmeI | TCCRAC | 2 cut(s) | 464, 722 |
| MnlI | CCTC | 8 cut(s) | 161, 185, 218, 261, 363, 398, 819, 1221 |
| Mph1103I | ATGCAT | 1 cut(s) | 35 |
| MroXI | GAANNNNTTC | 1 cut(s) | 653 |
| MseI | TTAA | 4 cut(s) | 233, 521, 618, 815 |
| MslI | CAYNNNNRTG | 2 cut(s) | 776, 836 |
| MspA1I | CMGCKG | 3 cut(s) | 77, 419, 1052 |
| MspI | CCGG | 1 cut(s) | 93 |
| MspR9I | CCNGG | 2 cut(s) | 165, 1173 |
| MunI | CAATTG | 1 cut(s) | 548 |
| MvaI | CCWGG | 2 cut(s) | 165, 1173 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 74, 86, 890, 899, 986, 1191 |
| NcoI | CCATGG | 1 cut(s) | 602 |
| NdeI | CATATG | 1 cut(s) | 238 |
| NdeII | GATC | 5 cut(s) | 377, 1081, 1112, 1129, 1209 |
| NlaIV | GGNNCC | 5 cut(s) | 118, 258, 357, 438, 759 |
| NmuCI | GTSAC | 1 cut(s) | 838 |
| NsiI | ATGCAT | 1 cut(s) | 35 |
| NspI | RCATGY | 2 cut(s) | 33, 775 |
| PagI | TCATGA | 2 cut(s) | 681, 1164 |
| PceI | AGGCCT | 1 cut(s) | 717 |
| PciI | ACATGT | 1 cut(s) | 771 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1133 |
| PdmI | GAANNNNTTC | 1 cut(s) | 653 |
| PfeI | GAWTC | 3 cut(s) | 994, 1124, 1168 |
| PfoI | TCCNGGA | 1 cut(s) | 163 |
| PkrI | GCNGC | 6 cut(s) | 79, 82, 178, 418, 421, 931 |
| PleI | GAGTC | 1 cut(s) | 1146 |
| PpsI | GAGTC | 1 cut(s) | 1146 |
| PscI | ACATGT | 1 cut(s) | 771 |
| Psp6I | CCWGG | 2 cut(s) | 163, 1171 |
| PspFI | CCCAGC | 2 cut(s) | 980, 1064 |
| PspGI | CCWGG | 2 cut(s) | 163, 1171 |
| PspN4I | GGNNCC | 5 cut(s) | 118, 258, 357, 438, 759 |
| PspPI | GGNCC | 3 cut(s) | 228, 256, 372 |
| PstI | CTGCAG | 2 cut(s) | 82, 424 |
| PsuI | RGATCY | 2 cut(s) | 1112, 1129 |
| PvuII | CAGCTG | 2 cut(s) | 419, 1052 |
| RsaI | GTAC | 2 cut(s) | 407, 1057 |
| RsaNI | GTAC | 2 cut(s) | 406, 1056 |
| RseI | CAYNNNNRTG | 2 cut(s) | 776, 836 |
| SaqAI | TTAA | 4 cut(s) | 233, 521, 618, 815 |
| SatI | GCNGC | 6 cut(s) | 78, 81, 177, 417, 420, 930 |
| Sau3AI | GATC | 5 cut(s) | 377, 1081, 1112, 1129, 1209 |
| Sau96I | GGNCC | 3 cut(s) | 228, 256, 372 |
| SchI | GAGTC | 1 cut(s) | 1147 |
| ScrFI | CCNGG | 2 cut(s) | 165, 1173 |
| SfaNI | GCATC | 1 cut(s) | 76 |
| SfcI | CTRYAG | 2 cut(s) | 78, 420 |
| SinI | GGWCC | 3 cut(s) | 228, 256, 372 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 776, 836 |
| SseBI | AGGCCT | 1 cut(s) | 717 |
| SsiI | CCGC | 2 cut(s) | 75, 929 |
| SspMI | CTAG | 6 cut(s) | 446, 531, 585, 843, 849, 1110 |
| StuI | AGGCCT | 1 cut(s) | 717 |
| StyD4I | CCNGG | 2 cut(s) | 163, 1171 |
| StyI | CCWWGG | 3 cut(s) | 409, 602, 1013 |
| TaiI | ACGT | 1 cut(s) | 52 |
| TaqI | TCGA | 2 cut(s) | 62, 1136 |
| TauI | GCSGC | 1 cut(s) | 932 |
| TfiI | GAWTC | 3 cut(s) | 994, 1124, 1168 |
| Tru1I | TTAA | 4 cut(s) | 233, 521, 618, 815 |
| Tru9I | TTAA | 4 cut(s) | 233, 521, 618, 815 |
| TscAI | CASTG | 4 cut(s) | 516, 909, 996, 1093 |
| TseFI | GTSAC | 1 cut(s) | 838 |
| TseI | GCWGC | 5 cut(s) | 77, 80, 176, 416, 419 |
| Tsp45I | GTSAC | 1 cut(s) | 838 |
| TspDTI | ATGAA | 8 cut(s) | 10, 213, 307, 701, 766, 865, 936, 1153 |
| TspRI | CASTG | 4 cut(s) | 516, 909, 996, 1093 |
| VpaK11BI | GGWCC | 3 cut(s) | 228, 256, 372 |
| XapI | RAATTY | 3 cut(s) | 159, 597, 911 |
| XbaI | TCTAGA | 1 cut(s) | 1109 |
| XceI | RCATGY | 2 cut(s) | 33, 775 |
| XmnI | GAANNNNTTC | 1 cut(s) | 653 |
| XspI | CTAG | 6 cut(s) | 446, 531, 585, 843, 849, 1110 |
| Zsp2I | ATGCAT | 1 cut(s) | 35 |