zinc-binding in reverse transcriptase
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 386 |
| AccB1I | GGYRCC | 1 cut(s) | 1299 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 581 |
| AccI | GTMKAC | 3 cut(s) | 195, 1326, 1554 |
| AccII | CGCG | 1 cut(s) | 1520 |
| AccIII | TCCGGA | 1 cut(s) | 1867 |
| AciI | CCGC | 9 cut(s) | 5, 129, 175, 253, 318, 365, 473, 759, 1806 |
| AclI | AACGTT | 1 cut(s) | 888 |
| AcoI | YGGCCR | 3 cut(s) | 220, 756, 1587 |
| AcsI | RAATTY | 6 cut(s) | 329, 694, 1043, 1331, 1811, 1923 |
| AcuI | CTGAAG | 3 cut(s) | 1059, 1247, 2012 |
| AfaI | GTAC | 3 cut(s) | 769, 1079, 1184 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 332, 389, 469, 581, 891, 1453 |
| AflIII | ACRYGT | 1 cut(s) | 1179 |
| AgsI | TTSAA | 8 cut(s) | 44, 100, 203, 671, 813, 1112, 1369, 1784 |
| AhlI | ACTAGT | 1 cut(s) | 1100 |
| AjnI | CCWGG | 2 cut(s) | 681, 1641 |
| AleI | CACNNNNGTG | 1 cut(s) | 530 |
| AluBI | AGCT | 8 cut(s) | 111, 804, 989, 1126, 1190, 1350, 1688, 2096 |
| AluI | AGCT | 8 cut(s) | 111, 804, 989, 1126, 1190, 1350, 1688, 2096 |
| Alw21I | GWGCWC | 1 cut(s) | 1864 |
| Ama87I | CYCGRG | 2 cut(s) | 1426, 1795 |
| Aor13HI | TCCGGA | 1 cut(s) | 1867 |
| ApeKI | GCWGC | 4 cut(s) | 321, 1238, 1468, 1787 |
| ApoI | RAATTY | 6 cut(s) | 329, 694, 1043, 1331, 1811, 1923 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 177, 209 |
| AspA2I | CCTAGG | 1 cut(s) | 1064 |
| AspLEI | GCGC | 1 cut(s) | 361 |
| AspS9I | GGNCC | 5 cut(s) | 72, 168, 369, 1061, 1090 |
| AsuHPI | GGTGA | 5 cut(s) | 172, 347, 697, 2012, 2050 |
| AsuII | TTCGAA | 2 cut(s) | 1047, 1920 |
| AsuNHI | GCTAGC | 1 cut(s) | 1637 |
| AvaI | CYCGRG | 2 cut(s) | 1426, 1795 |
| AvaII | GGWCC | 2 cut(s) | 168, 369 |
| AvrII | CCTAGG | 1 cut(s) | 1064 |
| BanI | GGYRCC | 1 cut(s) | 1299 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1061, 1093 |
| BbsI | GAAGAC | 1 cut(s) | 2018 |
| Bbv12I | GWGCWC | 1 cut(s) | 1864 |
| BbvCI | CCTCAGC | 1 cut(s) | 1265 |
| BbvI | GCAGC | 4 cut(s) | 333, 1250, 1455, 1799 |
| BccI | CCATC | 6 cut(s) | 158, 332, 1446, 1837, 1981, 2095 |
| BceAI | ACGGC | 1 cut(s) | 176 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 763, 797, 1723, 1757 |
| BciT130I | CCWGG | 2 cut(s) | 683, 1643 |
| BciVI | GTATCC | 2 cut(s) | 1011, 2026 |
| BclI | TGATCA | 2 cut(s) | 687, 1708 |
| BcuI | ACTAGT | 1 cut(s) | 1100 |
| BfaI | CTAG | 5 cut(s) | 896, 1014, 1065, 1101, 1638 |
| BfmI | CTRYAG | 2 cut(s) | 1657, 1879 |
| BfoI | RGCGCY | 1 cut(s) | 362 |
| BfuAI | ACCTGC | 1 cut(s) | 386 |
| BfuI | GTATCC | 2 cut(s) | 1011, 2026 |
| BisI | GCNGC | 6 cut(s) | 319, 322, 759, 1239, 1469, 1788 |
| BlnI | CCTAGG | 1 cut(s) | 1064 |
| BlsI | GCNGC | 6 cut(s) | 320, 323, 760, 1240, 1470, 1789 |
| Bme1390I | CCNGG | 2 cut(s) | 683, 1643 |
| Bme18I | GGWCC | 2 cut(s) | 168, 369 |
| BmeT110I | CYCGRG | 2 cut(s) | 1426, 1795 |
| BmgT120I | GGNCC | 5 cut(s) | 72, 168, 369, 1061, 1090 |
| BmiI | GGNNCC | 5 cut(s) | 169, 170, 370, 1301, 1594 |
| BmrFI | CCNGG | 2 cut(s) | 683, 1643 |
| BmsI | GCATC | 3 cut(s) | 142, 546, 1279 |
| BmtI | GCTAGC | 1 cut(s) | 1641 |
| BpiI | GAAGAC | 1 cut(s) | 2018 |
| Bpu10I | CCTNAGC | 2 cut(s) | 852, 1265 |
| Bpu14I | TTCGAA | 2 cut(s) | 1047, 1920 |
| BsaAI | YACGTR | 2 cut(s) | 1182, 1186 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2082 |
| BsaJI | CCNNGG | 6 cut(s) | 575, 1064, 1425, 1447, 1558, 1596 |
| BsaWI | WCCGGW | 2 cut(s) | 266, 1867 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 231, 261, 533, 563, 669, 699, 1124, 1154 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 332, 389, 469, 581, 891, 1453 |
| Bse118I | RCCGGY | 2 cut(s) | 361, 1954 |
| Bse1I | ACTGG | 1 cut(s) | 825 |
| Bse3DI | GCAATG | 3 cut(s) | 1466, 1498, 1928 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2082 |
| BseAI | TCCGGA | 1 cut(s) | 1867 |
| BseBI | CCWGG | 2 cut(s) | 683, 1643 |
| BseDI | CCNNGG | 6 cut(s) | 575, 1064, 1425, 1447, 1558, 1596 |
| BseGI | GGATG | 3 cut(s) | 1399, 1457, 1864 |
| BseJI | GATNNNNATC | 1 cut(s) | 2082 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 332, 389, 469, 581, 891, 1453 |
| BseMI | GCAATG | 3 cut(s) | 1466, 1498, 1928 |
| BseMII | CTCAG | 3 cut(s) | 720, 843, 1256 |
| BseNI | ACTGG | 1 cut(s) | 825 |
| BseRI | GAGGAG | 2 cut(s) | 239, 2038 |
| BseX3I | CGGCCG | 2 cut(s) | 220, 756 |
| BseXI | GCAGC | 4 cut(s) | 333, 1250, 1455, 1799 |
| BseYI | CCCAGC | 2 cut(s) | 107, 989 |
| BsgI | GTGCAG | 1 cut(s) | 1454 |
| Bsh1236I | CGCG | 1 cut(s) | 1520 |
| Bsh1285I | CGRYCG | 3 cut(s) | 223, 477, 759 |
| BshNI | GGYRCC | 1 cut(s) | 1299 |
| BsiEI | CGRYCG | 3 cut(s) | 223, 477, 759 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1864 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1426, 1795 |
| BsiSI | CCGG | 6 cut(s) | 267, 315, 362, 1590, 1868, 1955 |
| BsiWI | CGTACG | 1 cut(s) | 1182 |
| BslFI | GGGAC | 3 cut(s) | 13, 154, 1069 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 332, 389, 469, 581, 891, 1453 |
| BsmFI | GGGAC | 3 cut(s) | 13, 154, 1069 |
| BsoBI | CYCGRG | 2 cut(s) | 1426, 1795 |
| Bsp119I | TTCGAA | 2 cut(s) | 1047, 1920 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1864 |
| Bsp13I | TCCGGA | 1 cut(s) | 1867 |
| Bsp143I | GATC | 4 cut(s) | 687, 712, 789, 1708 |
| Bsp19I | CCATGG | 3 cut(s) | 575, 1558, 1596 |
| BspACI | CCGC | 9 cut(s) | 5, 129, 175, 253, 318, 365, 473, 759, 1806 |
| BspCNI | CTCAG | 3 cut(s) | 719, 844, 1257 |
| BspEI | TCCGGA | 1 cut(s) | 1867 |
| BspFNI | CGCG | 1 cut(s) | 1520 |
| BspHI | TCATGA | 1 cut(s) | 1024 |
| BspLI | GGNNCC | 5 cut(s) | 169, 170, 370, 1301, 1594 |
| BspMI | ACCTGC | 1 cut(s) | 386 |
| BspOI | GCTAGC | 1 cut(s) | 1641 |
| BspQI | GCTCTTC | 1 cut(s) | 1974 |
| BspT104I | TTCGAA | 2 cut(s) | 1047, 1920 |
| BspT107I | GGYRCC | 1 cut(s) | 1299 |
| BsrDI | GCAATG | 3 cut(s) | 1466, 1498, 1928 |
| BsrFI | RCCGGY | 2 cut(s) | 361, 1954 |
| BsrI | ACTGG | 1 cut(s) | 825 |
| BssAI | RCCGGY | 2 cut(s) | 361, 1954 |
| BssECI | CCNNGG | 6 cut(s) | 575, 1064, 1425, 1447, 1558, 1596 |
| BssMI | GATC | 4 cut(s) | 687, 712, 789, 1708 |
| BssT1I | CCWWGG | 5 cut(s) | 575, 1064, 1447, 1558, 1596 |
| Bst2UI | CCWGG | 2 cut(s) | 683, 1643 |
| Bst4CI | ACNGT | 7 cut(s) | 69, 739, 862, 1346, 1880, 1983, 2055 |
| Bst6I | CTCTTC | 2 cut(s) | 968, 1974 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1465 |
| BstBAI | YACGTR | 2 cut(s) | 1182, 1186 |
| BstBI | TTCGAA | 2 cut(s) | 1047, 1920 |
| BstC8I | GCNNGC | 3 cut(s) | 345, 363, 1639 |
| BstDEI | CTNAG | 4 cut(s) | 355, 706, 852, 1265 |
| BstDSI | CCRYGG | 3 cut(s) | 575, 1558, 1596 |
| BstF5I | GGATG | 3 cut(s) | 1399, 1457, 1864 |
| BstFNI | CGCG | 1 cut(s) | 1520 |
| BstH2I | RGCGCY | 1 cut(s) | 362 |
| BstHHI | GCGC | 1 cut(s) | 361 |
| BstKTI | GATC | 4 cut(s) | 690, 715, 792, 1711 |
| BstMBI | GATC | 4 cut(s) | 687, 712, 789, 1708 |
| BstMCI | CGRYCG | 3 cut(s) | 223, 477, 759 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1123, 1465 |
| BstNI | CCWGG | 2 cut(s) | 683, 1643 |
| BstSCI | CCNGG | 2 cut(s) | 681, 1641 |
| BstSFI | CTRYAG | 2 cut(s) | 1657, 1879 |
| BstSNI | TACGTA | 1 cut(s) | 1186 |
| BstUI | CGCG | 1 cut(s) | 1520 |
| BstV1I | GCAGC | 4 cut(s) | 333, 1250, 1455, 1799 |
| BstV2I | GAAGAC | 1 cut(s) | 2018 |
| BstZI | CGGCCG | 2 cut(s) | 220, 756 |
| BsuI | GTATCC | 2 cut(s) | 1011, 2026 |
| BtgI | CCRYGG | 3 cut(s) | 575, 1558, 1596 |
| BtsCI | GGATG | 3 cut(s) | 1399, 1457, 1864 |
| BtsIMutI | CAGTG | 2 cut(s) | 818, 1979 |
| BveI | ACCTGC | 1 cut(s) | 386 |
| Cac8I | GCNNGC | 3 cut(s) | 345, 363, 1639 |
| CciI | TCATGA | 1 cut(s) | 1024 |
| CfoI | GCGC | 1 cut(s) | 361 |
| Cfr10I | RCCGGY | 2 cut(s) | 361, 1954 |
| Cfr13I | GGNCC | 5 cut(s) | 72, 168, 369, 1061, 1090 |
| CseI | GACGC | 1 cut(s) | 205 |
| Csp6I | GTAC | 3 cut(s) | 768, 1078, 1183 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1566, 1601, 1938, 1973 |
| CviAII | CATG | 9 cut(s) | 445, 530, 576, 1025, 1336, 1415, 1559, 1597, 1606 |
| CviQI | GTAC | 3 cut(s) | 768, 1078, 1183 |
| DdeI | CTNAG | 4 cut(s) | 355, 706, 852, 1265 |
| DpnI | GATC | 4 cut(s) | 689, 714, 791, 1710 |
| DpnII | GATC | 4 cut(s) | 687, 712, 789, 1708 |
| EaeI | YGGCCR | 3 cut(s) | 220, 756, 1587 |
| EagI | CGGCCG | 2 cut(s) | 220, 756 |
| Eam1104I | CTCTTC | 2 cut(s) | 968, 1974 |
| EarI | CTCTTC | 2 cut(s) | 968, 1974 |
| EciI | GGCGGA | 2 cut(s) | 164, 242 |
| EclXI | CGGCCG | 2 cut(s) | 220, 756 |
| Eco105I | TACGTA | 1 cut(s) | 1186 |
| Eco130I | CCWWGG | 5 cut(s) | 575, 1064, 1447, 1558, 1596 |
| Eco147I | AGGCCT | 1 cut(s) | 1885 |
| Eco32I | GATATC | 3 cut(s) | 487, 1203, 1480 |
| Eco47I | GGWCC | 2 cut(s) | 168, 369 |
| Eco52I | CGGCCG | 2 cut(s) | 220, 756 |
| Eco57I | CTGAAG | 3 cut(s) | 1059, 1247, 2012 |
| Eco88I | CYCGRG | 2 cut(s) | 1426, 1795 |
| EcoO109I | RGGNCCY | 3 cut(s) | 168, 369, 1061 |
| EcoRI | GAATTC | 2 cut(s) | 1043, 1331 |
| EcoRII | CCWGG | 2 cut(s) | 681, 1641 |
| EcoRV | GATATC | 3 cut(s) | 487, 1203, 1480 |
| EcoT14I | CCWWGG | 5 cut(s) | 575, 1064, 1447, 1558, 1596 |
| ErhI | CCWWGG | 5 cut(s) | 575, 1064, 1447, 1558, 1596 |
| FaeI | CATG | 9 cut(s) | 448, 533, 579, 1028, 1339, 1418, 1562, 1600, 1609 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2010, 2042 |
| FaqI | GGGAC | 3 cut(s) | 13, 154, 1069 |
| FatI | CATG | 9 cut(s) | 444, 529, 575, 1024, 1335, 1414, 1558, 1596, 1605 |
| FauI | CCCGC | 2 cut(s) | 358, 1799 |
| FbaI | TGATCA | 2 cut(s) | 687, 1708 |
| FblI | GTMKAC | 3 cut(s) | 195, 1326, 1554 |
| Fnu4HI | GCNGC | 6 cut(s) | 319, 322, 759, 1239, 1469, 1788 |
| FokI | GGATG | 3 cut(s) | 1406, 1464, 1851 |
| Fsp4HI | GCNGC | 6 cut(s) | 319, 322, 759, 1239, 1469, 1788 |
| FspBI | CTAG | 5 cut(s) | 896, 1014, 1065, 1101, 1638 |
| GlaI | GCGC | 1 cut(s) | 360 |
| GluI | GCNGC | 6 cut(s) | 319, 322, 759, 1239, 1469, 1788 |
| GsaI | CCCAGC | 2 cut(s) | 111, 993 |
| HaeII | RGCGCY | 1 cut(s) | 362 |
| HapII | CCGG | 6 cut(s) | 267, 315, 362, 1590, 1868, 1955 |
| HgaI | GACGC | 1 cut(s) | 205 |
| HhaI | GCGC | 1 cut(s) | 361 |
| Hin1II | CATG | 9 cut(s) | 448, 533, 579, 1028, 1339, 1418, 1562, 1600, 1609 |
| Hin6I | GCGC | 1 cut(s) | 359 |
| HinP1I | GCGC | 1 cut(s) | 359 |
| HincII | GTYRAC | 3 cut(s) | 196, 421, 1386 |
| HindII | GTYRAC | 3 cut(s) | 196, 421, 1386 |
| HindIII | AAGCTT | 1 cut(s) | 1124 |
| HinfI | GANTC | 7 cut(s) | 678, 809, 1276, 1355, 1505, 2003, 2078 |
| HpaI | GTTAAC | 1 cut(s) | 1386 |
| HpaII | CCGG | 6 cut(s) | 267, 315, 362, 1590, 1868, 1955 |
| HphI | GGTGA | 5 cut(s) | 172, 347, 697, 2012, 2050 |
| Hpy166II | GTNNAC | 8 cut(s) | 196, 421, 450, 1153, 1327, 1386, 1555, 2058 |
| Hpy188I | TCNGA | 3 cut(s) | 23, 1275, 1667 |
| Hpy188III | TCNNGA | 7 cut(s) | 851, 876, 1025, 1428, 1868, 2030, 2091 |
| Hpy8I | GTNNAC | 8 cut(s) | 196, 421, 450, 1153, 1327, 1386, 1555, 2058 |
| Hpy99I | CGWCG | 3 cut(s) | 197, 200, 221 |
| HpyAV | CCTTC | 8 cut(s) | 85, 106, 253, 358, 667, 973, 1222, 1763 |
| HpyCH4III | ACNGT | 7 cut(s) | 69, 739, 862, 1346, 1880, 1983, 2055 |
| HpyCH4IV | ACGT | 5 cut(s) | 198, 299, 888, 1181, 1185 |
| HpyCH4V | TGCA | 7 cut(s) | 83, 784, 1097, 1238, 1285, 1412, 1471 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1123, 1465 |
| HpyF3I | CTNAG | 4 cut(s) | 355, 706, 852, 1265 |
| HpySE526I | ACGT | 5 cut(s) | 198, 299, 888, 1181, 1185 |
| Hsp92II | CATG | 9 cut(s) | 448, 533, 579, 1028, 1339, 1418, 1562, 1600, 1609 |
| HspAI | GCGC | 1 cut(s) | 359 |
| KflI | GGGWCCC | 1 cut(s) | 168 |
| Kpn2I | TCCGGA | 1 cut(s) | 1867 |
| KroI | GCCGGC | 1 cut(s) | 361 |
| KroNI | GCCGGC | 1 cut(s) | 363 |
| Ksp22I | TGATCA | 2 cut(s) | 687, 1708 |
| KspAI | GTTAAC | 1 cut(s) | 1386 |
| Kzo9I | GATC | 4 cut(s) | 687, 712, 789, 1708 |
| LguI | GCTCTTC | 1 cut(s) | 1974 |
| LmnI | GCTCC | 5 cut(s) | 392, 723, 801, 1456, 2093 |
| Lsp1109I | GCAGC | 4 cut(s) | 333, 1250, 1455, 1799 |
| LweI | GCATC | 3 cut(s) | 142, 546, 1279 |
| MaeI | CTAG | 5 cut(s) | 896, 1014, 1065, 1101, 1638 |
| MaeII | ACGT | 5 cut(s) | 198, 299, 888, 1181, 1185 |
| MaeIII | GTNAC | 5 cut(s) | 124, 565, 623, 1621, 2000 |
| MalI | GATC | 4 cut(s) | 689, 714, 791, 1710 |
| MboI | GATC | 4 cut(s) | 687, 712, 789, 1708 |
| MfeI | CAATTG | 3 cut(s) | 44, 1581, 1704 |
| MhlI | GDGCHC | 1 cut(s) | 1864 |
| MlyI | GAGTC | 2 cut(s) | 687, 1997 |
| MmeI | TCCRAC | 1 cut(s) | 1482 |
| MreI | CGCCGGCG | 1 cut(s) | 361 |
| MroI | TCCGGA | 1 cut(s) | 1867 |
| MroNI | GCCGGC | 1 cut(s) | 361 |
| MseI | TTAA | 8 cut(s) | 120, 309, 1194, 1385, 1515, 1838, 1914, 2043 |
| MslI | CAYNNNNRTG | 2 cut(s) | 530, 1716 |
| MspA1I | CMGCKG | 1 cut(s) | 989 |
| MspI | CCGG | 6 cut(s) | 267, 315, 362, 1590, 1868, 1955 |
| MspR9I | CCNGG | 2 cut(s) | 683, 1643 |
| MunI | CAATTG | 3 cut(s) | 44, 1581, 1704 |
| MvaI | CCWGG | 2 cut(s) | 683, 1643 |
| MvnI | CGCG | 1 cut(s) | 1520 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1123, 1465 |
| NaeI | GCCGGC | 1 cut(s) | 363 |
| NcoI | CCATGG | 3 cut(s) | 575, 1558, 1596 |
| NdeII | GATC | 4 cut(s) | 687, 712, 789, 1708 |
| NgoMIV | GCCGGC | 1 cut(s) | 361 |
| NheI | GCTAGC | 1 cut(s) | 1637 |
| NlaIII | CATG | 9 cut(s) | 448, 533, 579, 1028, 1339, 1418, 1562, 1600, 1609 |
| NlaIV | GGNNCC | 5 cut(s) | 169, 170, 370, 1301, 1594 |
| NmeAIII | GCCGAG | 2 cut(s) | 248, 734 |
| NmuCI | GTSAC | 1 cut(s) | 2000 |
| NspV | TTCGAA | 2 cut(s) | 1047, 1920 |
| OliI | CACNNNNGTG | 1 cut(s) | 530 |
| PagI | TCATGA | 1 cut(s) | 1024 |
| PceI | AGGCCT | 1 cut(s) | 1885 |
| PciSI | GCTCTTC | 1 cut(s) | 1974 |
| PdiI | GCCGGC | 1 cut(s) | 363 |
| PfeI | GAWTC | 5 cut(s) | 809, 1276, 1355, 1505, 2078 |
| Pfl23II | CGTACG | 1 cut(s) | 1182 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 581 |
| PkrI | GCNGC | 6 cut(s) | 320, 323, 760, 1240, 1470, 1789 |
| PleI | GAGTC | 2 cut(s) | 686, 1997 |
| PpsI | GAGTC | 2 cut(s) | 686, 1997 |
| Ppu21I | YACGTR | 2 cut(s) | 1182, 1186 |
| PpuMI | RGGWCCY | 2 cut(s) | 168, 369 |
| Psp1406I | AACGTT | 1 cut(s) | 888 |
| Psp5II | RGGWCCY | 2 cut(s) | 168, 369 |
| Psp6I | CCWGG | 2 cut(s) | 681, 1641 |
| PspFI | CCCAGC | 2 cut(s) | 107, 989 |
| PspGI | CCWGG | 2 cut(s) | 681, 1641 |
| PspLI | CGTACG | 1 cut(s) | 1182 |
| PspN4I | GGNNCC | 5 cut(s) | 169, 170, 370, 1301, 1594 |
| PspPI | GGNCC | 5 cut(s) | 72, 168, 369, 1061, 1090 |
| PspPPI | RGGWCCY | 2 cut(s) | 168, 369 |
| PvuII | CAGCTG | 1 cut(s) | 989 |
| RsaI | GTAC | 3 cut(s) | 769, 1079, 1184 |
| RsaNI | GTAC | 3 cut(s) | 768, 1078, 1183 |
| RseI | CAYNNNNRTG | 2 cut(s) | 530, 1716 |
| SalI | GTCGAC | 1 cut(s) | 194 |
| SapI | GCTCTTC | 1 cut(s) | 1974 |
| SaqAI | TTAA | 8 cut(s) | 120, 309, 1194, 1385, 1515, 1838, 1914, 2043 |
| SatI | GCNGC | 6 cut(s) | 319, 322, 759, 1239, 1469, 1788 |
| Sau3AI | GATC | 4 cut(s) | 687, 712, 789, 1708 |
| Sau96I | GGNCC | 5 cut(s) | 72, 168, 369, 1061, 1090 |
| SchI | GAGTC | 2 cut(s) | 687, 1997 |
| ScrFI | CCNGG | 2 cut(s) | 683, 1643 |
| SduI | GDGCHC | 1 cut(s) | 1864 |
| SfaNI | GCATC | 3 cut(s) | 142, 546, 1279 |
| SfcI | CTRYAG | 2 cut(s) | 1657, 1879 |
| SfuI | TTCGAA | 2 cut(s) | 1047, 1920 |
| SgrAI | CRCCGGYG | 1 cut(s) | 361 |
| SgrDI | CGTCGACG | 1 cut(s) | 194 |
| SinI | GGWCC | 2 cut(s) | 168, 369 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 530, 1716 |
| SnaBI | TACGTA | 1 cut(s) | 1186 |
| SpeI | ACTAGT | 1 cut(s) | 1100 |
| SseBI | AGGCCT | 1 cut(s) | 1885 |
| SsiI | CCGC | 9 cut(s) | 5, 129, 175, 253, 318, 365, 473, 759, 1806 |
| SspI | AATATT | 1 cut(s) | 499 |
| SspMI | CTAG | 5 cut(s) | 896, 1014, 1065, 1101, 1638 |
| StuI | AGGCCT | 1 cut(s) | 1885 |
| StyD4I | CCNGG | 2 cut(s) | 681, 1641 |
| StyI | CCWWGG | 5 cut(s) | 575, 1064, 1447, 1558, 1596 |
| TaaI | ACNGT | 7 cut(s) | 69, 739, 862, 1346, 1880, 1983, 2055 |
| TaiI | ACGT | 5 cut(s) | 201, 302, 891, 1184, 1188 |
| TauI | GCSGC | 2 cut(s) | 321, 761 |
| TfiI | GAWTC | 5 cut(s) | 809, 1276, 1355, 1505, 2078 |
| Tru1I | TTAA | 8 cut(s) | 120, 309, 1194, 1385, 1515, 1838, 1914, 2043 |
| Tru9I | TTAA | 8 cut(s) | 120, 309, 1194, 1385, 1515, 1838, 1914, 2043 |
| TscAI | CASTG | 2 cut(s) | 825, 1986 |
| TseFI | GTSAC | 1 cut(s) | 2000 |
| TseI | GCWGC | 4 cut(s) | 321, 1238, 1468, 1787 |
| Tsp45I | GTSAC | 1 cut(s) | 2000 |
| TspDTI | ATGAA | 9 cut(s) | 618, 843, 949, 1013, 1098, 1153, 1190, 1324, 1734 |
| TspGWI | ACGGA | 3 cut(s) | 541, 690, 1628 |
| TspRI | CASTG | 2 cut(s) | 825, 1986 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 581 |
| VpaK11BI | GGWCC | 2 cut(s) | 168, 369 |
| XapI | RAATTY | 6 cut(s) | 329, 694, 1043, 1331, 1811, 1923 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 139, 1348, 1603 |
| XmaJI | CCTAGG | 1 cut(s) | 1064 |
| XmiI | GTMKAC | 3 cut(s) | 195, 1326, 1554 |
| XspI | CTAG | 5 cut(s) | 896, 1014, 1065, 1101, 1638 |