Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 149 |
| AciI | CCGC | 2 cut(s) | 404, 517 |
| AclWI | GGATC | 2 cut(s) | 72, 508 |
| AfaI | GTAC | 1 cut(s) | 461 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 43 |
| AgsI | TTSAA | 5 cut(s) | 269, 338, 511, 639, 654 |
| AleI | CACNNNNGTG | 1 cut(s) | 37 |
| AluBI | AGCT | 2 cut(s) | 341, 538 |
| AluI | AGCT | 2 cut(s) | 341, 538 |
| Alw21I | GWGCWC | 1 cut(s) | 540 |
| Alw26I | GTCTC | 3 cut(s) | 93, 279, 464 |
| AlwI | GGATC | 2 cut(s) | 72, 508 |
| AoxI | GGCC | 2 cut(s) | 271, 359 |
| ApeKI | GCWGC | 1 cut(s) | 347 |
| AseI | ATTAAT | 1 cut(s) | 558 |
| AspS9I | GGNCC | 1 cut(s) | 359 |
| AsuHPI | GGTGA | 1 cut(s) | 37 |
| BanI | GGYRCC | 1 cut(s) | 149 |
| BanII | GRGCYC | 3 cut(s) | 32, 243, 540 |
| BauI | CACGAG | 1 cut(s) | 90 |
| Bbv12I | GWGCWC | 1 cut(s) | 540 |
| BbvI | GCAGC | 1 cut(s) | 334 |
| BccI | CCATC | 5 cut(s) | 7, 145, 242, 425, 524 |
| BceAI | ACGGC | 1 cut(s) | 163 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 524, 558 |
| BciVI | GTATCC | 1 cut(s) | 334 |
| BcoDI | GTCTC | 3 cut(s) | 93, 279, 464 |
| BfmI | CTRYAG | 1 cut(s) | 354 |
| BfuI | GTATCC | 1 cut(s) | 334 |
| BisI | GCNGC | 2 cut(s) | 348, 405 |
| BlsI | GCNGC | 2 cut(s) | 349, 406 |
| BmgT120I | GGNCC | 1 cut(s) | 359 |
| BmiI | GGNNCC | 1 cut(s) | 151 |
| BmsI | GCATC | 1 cut(s) | 416 |
| BpmI | CTGGAG | 1 cut(s) | 58 |
| BsaWI | WCCGGW | 1 cut(s) | 36 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 87, 112, 117, 142 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 43 |
| BseGI | GGATG | 2 cut(s) | 260, 535 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 43 |
| BseRI | GAGGAG | 4 cut(s) | 120, 123, 224, 573 |
| BseXI | GCAGC | 1 cut(s) | 334 |
| BshFI | GGCC | 2 cut(s) | 273, 361 |
| BshNI | GGYRCC | 1 cut(s) | 149 |
| BsiHKAI | GWGCWC | 1 cut(s) | 540 |
| BsiSI | CCGG | 1 cut(s) | 37 |
| BslFI | GGGAC | 1 cut(s) | 577 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 43 |
| BsmAI | GTCTC | 3 cut(s) | 93, 279, 464 |
| BsmBI | CGTCTC | 1 cut(s) | 279 |
| BsmFI | GGGAC | 1 cut(s) | 577 |
| BsnI | GGCC | 2 cut(s) | 273, 361 |
| Bsp1286I | GDGCHC | 3 cut(s) | 32, 243, 540 |
| Bsp143I | GATC | 3 cut(s) | 48, 77, 513 |
| BspACI | CCGC | 2 cut(s) | 404, 517 |
| BspANI | GGCC | 2 cut(s) | 273, 361 |
| BspLI | GGNNCC | 1 cut(s) | 151 |
| BspMAI | CTGCAG | 1 cut(s) | 358 |
| BspPI | GGATC | 2 cut(s) | 72, 508 |
| BspQI | GCTCTTC | 1 cut(s) | 676 |
| BspT107I | GGYRCC | 1 cut(s) | 149 |
| BssMI | GATC | 3 cut(s) | 48, 77, 513 |
| BssSI | CACGAG | 1 cut(s) | 90 |
| Bst2BI | CACGAG | 1 cut(s) | 90 |
| Bst4CI | ACNGT | 3 cut(s) | 25, 159, 475 |
| Bst6I | CTCTTC | 5 cut(s) | 56, 169, 201, 385, 676 |
| BstC8I | GCNNGC | 1 cut(s) | 536 |
| BstDEI | CTNAG | 2 cut(s) | 198, 463 |
| BstF5I | GGATG | 2 cut(s) | 260, 535 |
| BstKTI | GATC | 3 cut(s) | 51, 80, 516 |
| BstMAI | GTCTC | 3 cut(s) | 93, 279, 464 |
| BstMBI | GATC | 3 cut(s) | 48, 77, 513 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 347, 353, 410 |
| BstSFI | CTRYAG | 1 cut(s) | 354 |
| BstV1I | GCAGC | 1 cut(s) | 334 |
| BstX2I | RGATCY | 2 cut(s) | 77, 513 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 39, 431 |
| BstYI | RGATCY | 2 cut(s) | 77, 513 |
| BsuI | GTATCC | 1 cut(s) | 334 |
| BsuRI | GGCC | 2 cut(s) | 273, 361 |
| BtsCI | GGATG | 2 cut(s) | 260, 535 |
| Cac8I | GCNNGC | 1 cut(s) | 536 |
| Cfr13I | GGNCC | 1 cut(s) | 359 |
| Csp6I | GTAC | 1 cut(s) | 460 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 232, 267, 316, 351 |
| CviAII | CATG | 1 cut(s) | 344 |
| CviJI | RGCY | 7 cut(s) | 20, 30, 241, 273, 341, 361, 538 |
| CviKI_1 | RGCY | 7 cut(s) | 20, 30, 241, 273, 341, 361, 538 |
| CviQI | GTAC | 1 cut(s) | 460 |
| DdeI | CTNAG | 2 cut(s) | 198, 463 |
| DpnI | GATC | 3 cut(s) | 50, 79, 515 |
| DpnII | GATC | 3 cut(s) | 48, 77, 513 |
| Eam1104I | CTCTTC | 5 cut(s) | 56, 169, 201, 385, 676 |
| EarI | CTCTTC | 5 cut(s) | 56, 169, 201, 385, 676 |
| Ecl136II | GAGCTC | 1 cut(s) | 538 |
| Eco147I | AGGCCT | 1 cut(s) | 273 |
| Eco24I | GRGCYC | 3 cut(s) | 32, 243, 540 |
| Eco53kI | GAGCTC | 1 cut(s) | 538 |
| EcoICRI | GAGCTC | 1 cut(s) | 538 |
| EcoT38I | GRGCYC | 3 cut(s) | 32, 243, 540 |
| Esp3I | CGTCTC | 1 cut(s) | 279 |
| FaeI | CATG | 1 cut(s) | 347 |
| FaiI | YATR | 3 cut(s) | 345, 602, 667 |
| FaqI | GGGAC | 1 cut(s) | 577 |
| FatI | CATG | 1 cut(s) | 343 |
| Fnu4HI | GCNGC | 2 cut(s) | 348, 405 |
| FokI | GGATG | 2 cut(s) | 267, 542 |
| FriOI | GRGCYC | 3 cut(s) | 32, 243, 540 |
| Fsp4HI | GCNGC | 2 cut(s) | 348, 405 |
| GluI | GCNGC | 2 cut(s) | 348, 405 |
| GsuI | CTGGAG | 1 cut(s) | 58 |
| HaeIII | GGCC | 2 cut(s) | 273, 361 |
| HapII | CCGG | 1 cut(s) | 37 |
| Hin1II | CATG | 1 cut(s) | 347 |
| HincII | GTYRAC | 1 cut(s) | 625 |
| HindII | GTYRAC | 1 cut(s) | 625 |
| HinfI | GANTC | 1 cut(s) | 551 |
| HpaII | CCGG | 1 cut(s) | 37 |
| HphI | GGTGA | 1 cut(s) | 37 |
| Hpy166II | GTNNAC | 2 cut(s) | 396, 625 |
| Hpy188I | TCNGA | 6 cut(s) | 184, 284, 305, 430, 526, 576 |
| Hpy188III | TCNNGA | 5 cut(s) | 52, 75, 261, 469, 511 |
| Hpy8I | GTNNAC | 2 cut(s) | 396, 625 |
| HpyAV | CCTTC | 2 cut(s) | 181, 476 |
| HpyCH4III | ACNGT | 3 cut(s) | 25, 159, 475 |
| HpyCH4V | TGCA | 3 cut(s) | 356, 604, 620 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 347, 353, 410 |
| HpyF3I | CTNAG | 2 cut(s) | 198, 463 |
| Hsp92II | CATG | 1 cut(s) | 347 |
| Kzo9I | GATC | 3 cut(s) | 48, 77, 513 |
| LguI | GCTCTTC | 1 cut(s) | 676 |
| LmnI | GCTCC | 2 cut(s) | 295, 355 |
| LpnPI | CCDG | 7 cut(s) | 50, 88, 200, 274, 300, 342, 366 |
| Lsp1109I | GCAGC | 1 cut(s) | 334 |
| LweI | GCATC | 1 cut(s) | 416 |
| MaeIII | GTNAC | 1 cut(s) | 52 |
| MalI | GATC | 3 cut(s) | 50, 79, 515 |
| MboI | GATC | 3 cut(s) | 48, 77, 513 |
| MboII | GAAGA | 8 cut(s) | 19, 22, 73, 156, 159, 218, 372, 663 |
| MfeI | CAATTG | 1 cut(s) | 676 |
| MflI | RGATCY | 2 cut(s) | 77, 513 |
| MhlI | GDGCHC | 3 cut(s) | 32, 243, 540 |
| MluCI | AATT | 2 cut(s) | 290, 676 |
| MmeI | TCCRAC | 2 cut(s) | 24, 207 |
| MseI | TTAA | 1 cut(s) | 558 |
| MslI | CAYNNNNRTG | 1 cut(s) | 37 |
| MspI | CCGG | 1 cut(s) | 37 |
| MunI | CAATTG | 1 cut(s) | 676 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 347, 353, 410 |
| NdeII | GATC | 3 cut(s) | 48, 77, 513 |
| NlaIII | CATG | 1 cut(s) | 347 |
| NlaIV | GGNNCC | 1 cut(s) | 151 |
| NmuCI | GTSAC | 1 cut(s) | 52 |
| OliI | CACNNNNGTG | 1 cut(s) | 37 |
| PceI | AGGCCT | 1 cut(s) | 273 |
| PciSI | GCTCTTC | 1 cut(s) | 676 |
| PfeI | GAWTC | 1 cut(s) | 551 |
| PkrI | GCNGC | 2 cut(s) | 349, 406 |
| PshBI | ATTAAT | 1 cut(s) | 558 |
| Psp124BI | GAGCTC | 1 cut(s) | 540 |
| PspN4I | GGNNCC | 1 cut(s) | 151 |
| PspPI | GGNCC | 1 cut(s) | 359 |
| PstI | CTGCAG | 1 cut(s) | 358 |
| PsuI | RGATCY | 2 cut(s) | 77, 513 |
| RsaI | GTAC | 1 cut(s) | 461 |
| RsaNI | GTAC | 1 cut(s) | 460 |
| RseI | CAYNNNNRTG | 1 cut(s) | 37 |
| SacI | GAGCTC | 1 cut(s) | 540 |
| SapI | GCTCTTC | 1 cut(s) | 676 |
| SaqAI | TTAA | 1 cut(s) | 558 |
| SatI | GCNGC | 2 cut(s) | 348, 405 |
| Sau3AI | GATC | 3 cut(s) | 48, 77, 513 |
| Sau96I | GGNCC | 1 cut(s) | 359 |
| SbfI | CCTGCAGG | 1 cut(s) | 358 |
| SdaI | CCTGCAGG | 1 cut(s) | 358 |
| SduI | GDGCHC | 3 cut(s) | 32, 243, 540 |
| SetI | ASST | 6 cut(s) | 130, 182, 222, 343, 540, 659 |
| SfaNI | GCATC | 1 cut(s) | 416 |
| SfcI | CTRYAG | 1 cut(s) | 354 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 37 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 358 |
| Sse9I | AATT | 2 cut(s) | 290, 676 |
| SseBI | AGGCCT | 1 cut(s) | 273 |
| SsiI | CCGC | 2 cut(s) | 404, 517 |
| SstI | GAGCTC | 1 cut(s) | 540 |
| StuI | AGGCCT | 1 cut(s) | 273 |
| TaaI | ACNGT | 3 cut(s) | 25, 159, 475 |
| TaqI | TCGA | 1 cut(s) | 468 |
| TasI | AATT | 2 cut(s) | 290, 676 |
| TauI | GCSGC | 1 cut(s) | 407 |
| TfiI | GAWTC | 1 cut(s) | 551 |
| Tru1I | TTAA | 1 cut(s) | 558 |
| Tru9I | TTAA | 1 cut(s) | 558 |
| TseFI | GTSAC | 1 cut(s) | 52 |
| TseI | GCWGC | 1 cut(s) | 347 |
| Tsp45I | GTSAC | 1 cut(s) | 52 |
| TspGWI | ACGGA | 3 cut(s) | 71, 266, 576 |
| VspI | ATTAAT | 1 cut(s) | 558 |