ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 2 - 70 | 2.6e-14 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 247 |
| AccB1I | GGYRCC | 1 cut(s) | 247 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 196 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 1 cut(s) | 343 |
| AfaI | GTAC | 1 cut(s) | 249 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 196, 277, 334 |
| AflIII | ACRYGT | 2 cut(s) | 160, 212 |
| AgsI | TTSAA | 1 cut(s) | 11 |
| AjnI | CCWGG | 1 cut(s) | 75 |
| AluBI | AGCT | 2 cut(s) | 65, 374 |
| AluI | AGCT | 2 cut(s) | 65, 374 |
| Alw26I | GTCTC | 1 cut(s) | 117 |
| Ama87I | CYCGRG | 1 cut(s) | 29 |
| AoxI | GGCC | 2 cut(s) | 3, 186 |
| ApeKI | GCWGC | 1 cut(s) | 62 |
| ApoI | RAATTY | 1 cut(s) | 343 |
| AseI | ATTAAT | 2 cut(s) | 351, 357 |
| Asp718I | GGTACC | 1 cut(s) | 247 |
| AspS9I | GGNCC | 1 cut(s) | 187 |
| AvaI | CYCGRG | 1 cut(s) | 29 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BanI | GGYRCC | 1 cut(s) | 247 |
| BauI | CACGAG | 1 cut(s) | 306 |
| BbvI | GCAGC | 1 cut(s) | 74 |
| BccI | CCATC | 1 cut(s) | 328 |
| BciT130I | CCWGG | 1 cut(s) | 77 |
| BcoDI | GTCTC | 1 cut(s) | 117 |
| BisI | GCNGC | 1 cut(s) | 63 |
| BlpI | GCTNAGC | 1 cut(s) | 375 |
| BlsI | GCNGC | 1 cut(s) | 64 |
| Bme1390I | CCNGG | 1 cut(s) | 77 |
| BmeT110I | CYCGRG | 1 cut(s) | 29 |
| BmgT120I | GGNCC | 1 cut(s) | 187 |
| BmiI | GGNNCC | 1 cut(s) | 249 |
| BmrFI | CCNGG | 1 cut(s) | 77 |
| BmsI | GCATC | 1 cut(s) | 142 |
| Bpu10I | CCTNAGC | 1 cut(s) | 238 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 375 |
| BsaJI | CCNNGG | 2 cut(s) | 76, 243 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 196, 277, 334 |
| BseBI | CCWGG | 1 cut(s) | 77 |
| BseDI | CCNNGG | 2 cut(s) | 76, 243 |
| BseGI | GGATG | 1 cut(s) | 271 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 196, 277, 334 |
| BseMII | CTCAG | 1 cut(s) | 366 |
| BseXI | GCAGC | 1 cut(s) | 74 |
| BshFI | GGCC | 2 cut(s) | 5, 188 |
| BshNI | GGYRCC | 1 cut(s) | 247 |
| BsiHKCI | CYCGRG | 1 cut(s) | 29 |
| BslFI | GGGAC | 1 cut(s) | 310 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 196, 277, 334 |
| BsmAI | GTCTC | 1 cut(s) | 117 |
| BsmFI | GGGAC | 1 cut(s) | 310 |
| BsnI | GGCC | 2 cut(s) | 5, 188 |
| BsoBI | CYCGRG | 1 cut(s) | 29 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 375 |
| BspANI | GGCC | 2 cut(s) | 5, 188 |
| BspCNI | CTCAG | 1 cut(s) | 367 |
| BspHI | TCATGA | 1 cut(s) | 169 |
| BspLI | GGNNCC | 1 cut(s) | 249 |
| BspT107I | GGYRCC | 1 cut(s) | 247 |
| BssECI | CCNNGG | 2 cut(s) | 76, 243 |
| BssSI | CACGAG | 1 cut(s) | 306 |
| Bst2BI | CACGAG | 1 cut(s) | 306 |
| Bst2UI | CCWGG | 1 cut(s) | 77 |
| Bst4CI | ACNGT | 2 cut(s) | 182, 287 |
| BstDEI | CTNAG | 2 cut(s) | 238, 375 |
| BstEII | GGTNACC | 1 cut(s) | 232 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 275 |
| BstF5I | GGATG | 1 cut(s) | 271 |
| BstMAI | GTCTC | 1 cut(s) | 117 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 206 |
| BstNI | CCWGG | 1 cut(s) | 77 |
| BstNSI | RCATGY | 1 cut(s) | 164 |
| BstPI | GGTNACC | 1 cut(s) | 232 |
| BstSCI | CCNGG | 1 cut(s) | 75 |
| BstV1I | GCAGC | 1 cut(s) | 74 |
| BsuRI | GGCC | 2 cut(s) | 5, 188 |
| BtsCI | GGATG | 1 cut(s) | 271 |
| BtsIMutI | CAGTG | 1 cut(s) | 187 |
| CciI | TCATGA | 1 cut(s) | 169 |
| Cfr13I | GGNCC | 1 cut(s) | 187 |
| Csp6I | GTAC | 1 cut(s) | 248 |
| CspCI | CAANNNNNGTGG | 3 cut(s) | 34, 165, 200 |
| CviAII | CATG | 4 cut(s) | 14, 88, 161, 170 |
| CviJI | RGCY | 7 cut(s) | 5, 65, 188, 200, 242, 374, 379 |
| CviKI_1 | RGCY | 7 cut(s) | 5, 65, 188, 200, 242, 374, 379 |
| CviQI | GTAC | 1 cut(s) | 248 |
| DdeI | CTNAG | 2 cut(s) | 238, 375 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eco88I | CYCGRG | 1 cut(s) | 29 |
| Eco91I | GGTNACC | 1 cut(s) | 232 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 275 |
| EcoO65I | GGTNACC | 1 cut(s) | 232 |
| EcoRII | CCWGG | 1 cut(s) | 75 |
| EcoT22I | ATGCAT | 1 cut(s) | 135 |
| FaeI | CATG | 4 cut(s) | 17, 91, 164, 173 |
| FaiI | YATR | 9 cut(s) | 15, 89, 131, 147, 162, 171, 192, 276, 323 |
| FaqI | GGGAC | 1 cut(s) | 310 |
| FatI | CATG | 4 cut(s) | 13, 87, 160, 169 |
| Fnu4HI | GCNGC | 1 cut(s) | 63 |
| FokI | GGATG | 1 cut(s) | 278 |
| Fsp4HI | GCNGC | 1 cut(s) | 63 |
| GluI | GCNGC | 1 cut(s) | 63 |
| HaeIII | GGCC | 2 cut(s) | 5, 188 |
| Hin1II | CATG | 4 cut(s) | 17, 91, 164, 173 |
| Hpy188I | TCNGA | 1 cut(s) | 105 |
| Hpy188III | TCNNGA | 3 cut(s) | 29, 170, 263 |
| HpyCH4III | ACNGT | 2 cut(s) | 182, 287 |
| HpyCH4IV | ACGT | 1 cut(s) | 212 |
| HpyCH4V | TGCA | 3 cut(s) | 50, 133, 209 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 206 |
| HpyF3I | CTNAG | 2 cut(s) | 238, 375 |
| HpySE526I | ACGT | 1 cut(s) | 212 |
| Hsp92II | CATG | 4 cut(s) | 17, 91, 164, 173 |
| KpnI | GGTACC | 1 cut(s) | 251 |
| LmnI | GCTCC | 1 cut(s) | 371 |
| LpnPI | CCDG | 4 cut(s) | 62, 89, 248, 264 |
| Lsp1109I | GCAGC | 1 cut(s) | 74 |
| LweI | GCATC | 1 cut(s) | 142 |
| MaeII | ACGT | 1 cut(s) | 212 |
| MaeIII | GTNAC | 4 cut(s) | 83, 148, 232, 301 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluCI | AATT | 2 cut(s) | 51, 343 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MmeI | TCCRAC | 1 cut(s) | 83 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| Mph1103I | ATGCAT | 1 cut(s) | 135 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 4 cut(s) | 297, 351, 357, 385 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspR9I | CCNGG | 1 cut(s) | 77 |
| MvaI | CCWGG | 1 cut(s) | 77 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 206 |
| NlaIII | CATG | 4 cut(s) | 17, 91, 164, 173 |
| NlaIV | GGNNCC | 1 cut(s) | 249 |
| NmeAIII | GCCGAG | 1 cut(s) | 268 |
| NmuCI | GTSAC | 2 cut(s) | 83, 301 |
| NsiI | ATGCAT | 1 cut(s) | 135 |
| NspI | RCATGY | 1 cut(s) | 164 |
| PaeR7I | CTCGAG | 1 cut(s) | 29 |
| PagI | TCATGA | 1 cut(s) | 169 |
| PciI | ACATGT | 1 cut(s) | 160 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 196 |
| PkrI | GCNGC | 1 cut(s) | 64 |
| PscI | ACATGT | 1 cut(s) | 160 |
| PshBI | ATTAAT | 2 cut(s) | 351, 357 |
| Psp6I | CCWGG | 1 cut(s) | 75 |
| PspEI | GGTNACC | 1 cut(s) | 232 |
| PspGI | CCWGG | 1 cut(s) | 75 |
| PspN4I | GGNNCC | 1 cut(s) | 249 |
| PspPI | GGNCC | 1 cut(s) | 187 |
| RsaI | GTAC | 1 cut(s) | 249 |
| RsaNI | GTAC | 1 cut(s) | 248 |
| SaqAI | TTAA | 4 cut(s) | 297, 351, 357, 385 |
| SatI | GCNGC | 1 cut(s) | 63 |
| Sau96I | GGNCC | 1 cut(s) | 187 |
| ScrFI | CCNGG | 1 cut(s) | 77 |
| SfaNI | GCATC | 1 cut(s) | 142 |
| Sfr274I | CTCGAG | 1 cut(s) | 29 |
| SlaI | CTCGAG | 1 cut(s) | 29 |
| SmlI | CTYRAG | 1 cut(s) | 29 |
| SmoI | CTYRAG | 1 cut(s) | 29 |
| Sse9I | AATT | 2 cut(s) | 51, 343 |
| SspI | AATATT | 1 cut(s) | 355 |
| StyD4I | CCNGG | 1 cut(s) | 75 |
| TaaI | ACNGT | 2 cut(s) | 182, 287 |
| TaiI | ACGT | 1 cut(s) | 215 |
| TaqI | TCGA | 2 cut(s) | 30, 332 |
| TasI | AATT | 2 cut(s) | 51, 343 |
| Tru1I | TTAA | 4 cut(s) | 297, 351, 357, 385 |
| Tru9I | TTAA | 4 cut(s) | 297, 351, 357, 385 |
| TscAI | CASTG | 1 cut(s) | 187 |
| TseFI | GTSAC | 2 cut(s) | 83, 301 |
| TseI | GCWGC | 1 cut(s) | 62 |
| Tsp45I | GTSAC | 2 cut(s) | 83, 301 |
| TspDTI | ATGAA | 3 cut(s) | 158, 186, 247 |
| TspRI | CASTG | 1 cut(s) | 187 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 196 |
| VspI | ATTAAT | 2 cut(s) | 351, 357 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 275 |
| XapI | RAATTY | 1 cut(s) | 343 |
| XceI | RCATGY | 1 cut(s) | 164 |
| XhoI | CTCGAG | 1 cut(s) | 29 |
| Zsp2I | ATGCAT | 1 cut(s) | 135 |