Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 584 |
| AccI | GTMKAC | 1 cut(s) | 78 |
| AccII | CGCG | 3 cut(s) | 859, 866, 951 |
| AciI | CCGC | 5 cut(s) | 859, 866, 889, 924, 933 |
| AclWI | GGATC | 3 cut(s) | 274, 287, 881 |
| AcoI | YGGCCR | 1 cut(s) | 514 |
| AcsI | RAATTY | 3 cut(s) | 21, 123, 740 |
| AcuI | CTGAAG | 1 cut(s) | 543 |
| AfaI | GTAC | 1 cut(s) | 986 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 774, 997 |
| AgsI | TTSAA | 6 cut(s) | 391, 523, 673, 716, 746, 782 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 545 |
| AjnI | CCWGG | 3 cut(s) | 530, 757, 795 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 774, 806 |
| AluBI | AGCT | 2 cut(s) | 544, 941 |
| AluI | AGCT | 2 cut(s) | 544, 941 |
| Alw21I | GWGCWC | 1 cut(s) | 465 |
| Alw26I | GTCTC | 6 cut(s) | 42, 164, 415, 540, 822, 895 |
| Alw44I | GTGCAC | 1 cut(s) | 461 |
| AlwI | GGATC | 3 cut(s) | 274, 287, 881 |
| AoxI | GGCC | 5 cut(s) | 141, 514, 582, 793, 1044 |
| ApaLI | GTGCAC | 1 cut(s) | 461 |
| ApeKI | GCWGC | 5 cut(s) | 198, 527, 665, 725, 728 |
| ApoI | RAATTY | 3 cut(s) | 21, 123, 740 |
| AseI | ATTAAT | 1 cut(s) | 294 |
| AspLEI | GCGC | 2 cut(s) | 112, 859 |
| AspS9I | GGNCC | 1 cut(s) | 1044 |
| AsuHPI | GGTGA | 1 cut(s) | 440 |
| BaeGI | GKGCMC | 1 cut(s) | 465 |
| BalI | TGGCCA | 1 cut(s) | 516 |
| BamHI | GGATCC | 1 cut(s) | 279 |
| BanII | GRGCYC | 1 cut(s) | 767 |
| Bbv12I | GWGCWC | 1 cut(s) | 465 |
| BbvCI | CCTCAGC | 1 cut(s) | 579 |
| BbvI | GCAGC | 5 cut(s) | 210, 539, 652, 712, 715 |
| BccI | CCATC | 5 cut(s) | 54, 308, 500, 835, 947 |
| BceAI | ACGGC | 2 cut(s) | 634, 897 |
| BciT130I | CCWGG | 3 cut(s) | 532, 759, 797 |
| BcoDI | GTCTC | 6 cut(s) | 42, 164, 415, 540, 822, 895 |
| BfaI | CTAG | 6 cut(s) | 17, 131, 284, 545, 602, 995 |
| BfmI | CTRYAG | 2 cut(s) | 196, 586 |
| BfoI | RGCGCY | 1 cut(s) | 113 |
| BfuAI | ACCTGC | 1 cut(s) | 584 |
| BisI | GCNGC | 7 cut(s) | 199, 528, 666, 726, 729, 860, 925 |
| BlpI | GCTNAGC | 1 cut(s) | 113 |
| BlsI | GCNGC | 7 cut(s) | 200, 529, 667, 727, 730, 861, 926 |
| Bme1390I | CCNGG | 3 cut(s) | 532, 759, 797 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 545 |
| BmgT120I | GGNCC | 1 cut(s) | 1044 |
| BmiI | GGNNCC | 2 cut(s) | 281, 766 |
| BmrFI | CCNGG | 3 cut(s) | 532, 759, 797 |
| BmsI | GCATC | 2 cut(s) | 210, 310 |
| BpmI | CTGGAG | 1 cut(s) | 818 |
| Bpu10I | CCTNAGC | 1 cut(s) | 579 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 113 |
| BpuEI | CTTGAG | 2 cut(s) | 17, 919 |
| BsaI | GGTCTC | 1 cut(s) | 540 |
| BsaJI | CCNNGG | 1 cut(s) | 758 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 477, 483, 507, 513 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 774, 997 |
| Bse1I | ACTGG | 1 cut(s) | 178 |
| BseBI | CCWGG | 3 cut(s) | 532, 759, 797 |
| BseDI | CCNNGG | 1 cut(s) | 758 |
| BseGI | GGATG | 3 cut(s) | 142, 300, 511 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 774, 997 |
| BseMII | CTCAG | 2 cut(s) | 570, 833 |
| BseNI | ACTGG | 1 cut(s) | 178 |
| BseSI | GKGCMC | 1 cut(s) | 465 |
| BseXI | GCAGC | 5 cut(s) | 210, 539, 652, 712, 715 |
| BseYI | CCCAGC | 3 cut(s) | 41, 1021, 1041 |
| BsgI | GTGCAG | 1 cut(s) | 957 |
| Bsh1236I | CGCG | 3 cut(s) | 859, 866, 951 |
| BshFI | GGCC | 5 cut(s) | 143, 516, 584, 795, 1046 |
| BsiHKAI | GWGCWC | 1 cut(s) | 465 |
| BsiSI | CCGG | 2 cut(s) | 732, 991 |
| BslFI | GGGAC | 4 cut(s) | 249, 892, 949, 973 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 774, 997 |
| BsmAI | GTCTC | 6 cut(s) | 42, 164, 415, 540, 822, 895 |
| BsmBI | CGTCTC | 1 cut(s) | 895 |
| BsmFI | GGGAC | 4 cut(s) | 249, 892, 949, 973 |
| BsnI | GGCC | 5 cut(s) | 143, 516, 584, 795, 1046 |
| Bso31I | GGTCTC | 1 cut(s) | 540 |
| Bsp1286I | GDGCHC | 2 cut(s) | 465, 767 |
| Bsp143I | GATC | 2 cut(s) | 279, 873 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 113 |
| Bsp68I | TCGCGA | 1 cut(s) | 951 |
| BspACI | CCGC | 5 cut(s) | 859, 866, 889, 924, 933 |
| BspANI | GGCC | 5 cut(s) | 143, 516, 584, 795, 1046 |
| BspCNI | CTCAG | 2 cut(s) | 571, 832 |
| BspFNI | CGCG | 3 cut(s) | 859, 866, 951 |
| BspLI | GGNNCC | 2 cut(s) | 281, 766 |
| BspMAI | CTGCAG | 1 cut(s) | 200 |
| BspMI | ACCTGC | 1 cut(s) | 584 |
| BspPI | GGATC | 3 cut(s) | 274, 287, 881 |
| BspTNI | GGTCTC | 1 cut(s) | 540 |
| BsrI | ACTGG | 1 cut(s) | 178 |
| BssECI | CCNNGG | 1 cut(s) | 758 |
| BssMI | GATC | 2 cut(s) | 279, 873 |
| Bst2UI | CCWGG | 3 cut(s) | 532, 759, 797 |
| Bst4CI | ACNGT | 2 cut(s) | 312, 572 |
| Bst6I | CTCTTC | 1 cut(s) | 60 |
| BstC8I | GCNNGC | 2 cut(s) | 514, 864 |
| BstDEI | CTNAG | 4 cut(s) | 113, 579, 769, 819 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 772 |
| BstF5I | GGATG | 3 cut(s) | 142, 300, 511 |
| BstFNI | CGCG | 3 cut(s) | 859, 866, 951 |
| BstH2I | RGCGCY | 1 cut(s) | 113 |
| BstHHI | GCGC | 2 cut(s) | 112, 859 |
| BstKTI | GATC | 2 cut(s) | 282, 876 |
| BstMAI | GTCTC | 6 cut(s) | 42, 164, 415, 540, 822, 895 |
| BstMBI | GATC | 2 cut(s) | 279, 873 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 560, 590, 863, 930 |
| BstNI | CCWGG | 3 cut(s) | 532, 759, 797 |
| BstNSI | RCATGY | 1 cut(s) | 757 |
| BstSCI | CCNGG | 3 cut(s) | 530, 757, 795 |
| BstSFI | CTRYAG | 2 cut(s) | 196, 586 |
| BstSLI | GKGCMC | 1 cut(s) | 465 |
| BstUI | CGCG | 3 cut(s) | 859, 866, 951 |
| BstV1I | GCAGC | 5 cut(s) | 210, 539, 652, 712, 715 |
| BstX2I | RGATCY | 1 cut(s) | 279 |
| BstYI | RGATCY | 1 cut(s) | 279 |
| BsuRI | GGCC | 5 cut(s) | 143, 516, 584, 795, 1046 |
| BtgZI | GCGATG | 2 cut(s) | 924, 966 |
| BtsCI | GGATG | 3 cut(s) | 142, 300, 511 |
| BtsI | GCAGTG | 1 cut(s) | 845 |
| BtsIMutI | CAGTG | 2 cut(s) | 568, 845 |
| BtuMI | TCGCGA | 1 cut(s) | 951 |
| BveI | ACCTGC | 1 cut(s) | 584 |
| Cac8I | GCNNGC | 2 cut(s) | 514, 864 |
| CfoI | GCGC | 2 cut(s) | 112, 859 |
| Cfr13I | GGNCC | 1 cut(s) | 1044 |
| CseI | GACGC | 1 cut(s) | 64 |
| Csp6I | GTAC | 1 cut(s) | 985 |
| CviAII | CATG | 6 cut(s) | 10, 257, 411, 551, 754, 920 |
| CviQI | GTAC | 1 cut(s) | 985 |
| DdeI | CTNAG | 4 cut(s) | 113, 579, 769, 819 |
| DpnI | GATC | 2 cut(s) | 281, 875 |
| DpnII | GATC | 2 cut(s) | 279, 873 |
| DriI | GACNNNNNGTC | 1 cut(s) | 545 |
| EaeI | YGGCCR | 1 cut(s) | 514 |
| Eam1104I | CTCTTC | 1 cut(s) | 60 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 545 |
| EarI | CTCTTC | 1 cut(s) | 60 |
| Eco147I | AGGCCT | 2 cut(s) | 143, 584 |
| Eco24I | GRGCYC | 1 cut(s) | 767 |
| Eco31I | GGTCTC | 1 cut(s) | 540 |
| Eco57I | CTGAAG | 1 cut(s) | 543 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 772 |
| EcoRII | CCWGG | 3 cut(s) | 530, 757, 795 |
| EcoT38I | GRGCYC | 1 cut(s) | 767 |
| Esp3I | CGTCTC | 1 cut(s) | 895 |
| FaeI | CATG | 6 cut(s) | 13, 260, 414, 554, 757, 923 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 1020 |
| FaqI | GGGAC | 4 cut(s) | 249, 892, 949, 973 |
| FatI | CATG | 6 cut(s) | 9, 256, 410, 550, 753, 919 |
| FauI | CCCGC | 1 cut(s) | 926 |
| FblI | GTMKAC | 1 cut(s) | 78 |
| Fnu4HI | GCNGC | 7 cut(s) | 199, 528, 666, 726, 729, 860, 925 |
| FokI | GGATG | 3 cut(s) | 149, 287, 518 |
| FriOI | GRGCYC | 1 cut(s) | 767 |
| Fsp4HI | GCNGC | 7 cut(s) | 199, 528, 666, 726, 729, 860, 925 |
| FspBI | CTAG | 6 cut(s) | 17, 131, 284, 545, 602, 995 |
| GlaI | GCGC | 2 cut(s) | 111, 858 |
| GluI | GCNGC | 7 cut(s) | 199, 528, 666, 726, 729, 860, 925 |
| GsaI | CCCAGC | 3 cut(s) | 45, 1025, 1045 |
| GsuI | CTGGAG | 1 cut(s) | 818 |
| HaeII | RGCGCY | 1 cut(s) | 113 |
| HaeIII | GGCC | 5 cut(s) | 143, 516, 584, 795, 1046 |
| HapII | CCGG | 2 cut(s) | 732, 991 |
| HgaI | GACGC | 1 cut(s) | 64 |
| HhaI | GCGC | 2 cut(s) | 112, 859 |
| Hin1II | CATG | 6 cut(s) | 13, 260, 414, 554, 757, 923 |
| Hin6I | GCGC | 2 cut(s) | 110, 857 |
| HinP1I | GCGC | 2 cut(s) | 110, 857 |
| HinfI | GANTC | 3 cut(s) | 647, 782, 823 |
| HpaII | CCGG | 2 cut(s) | 732, 991 |
| HphI | GGTGA | 1 cut(s) | 440 |
| Hpy166II | GTNNAC | 4 cut(s) | 79, 181, 342, 463 |
| Hpy188I | TCNGA | 4 cut(s) | 441, 697, 708, 822 |
| Hpy188III | TCNNGA | 4 cut(s) | 131, 537, 877, 950 |
| Hpy8I | GTNNAC | 4 cut(s) | 79, 181, 342, 463 |
| HpyAV | CCTTC | 6 cut(s) | 97, 160, 471, 575, 679, 908 |
| HpyCH4III | ACNGT | 2 cut(s) | 312, 572 |
| HpyCH4IV | ACGT | 2 cut(s) | 241, 344 |
| HpyCH4V | TGCA | 6 cut(s) | 198, 260, 368, 463, 838, 974 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 560, 590, 863, 930 |
| HpyF3I | CTNAG | 4 cut(s) | 113, 579, 769, 819 |
| HpySE526I | ACGT | 2 cut(s) | 241, 344 |
| Hsp92II | CATG | 6 cut(s) | 13, 260, 414, 554, 757, 923 |
| HspAI | GCGC | 2 cut(s) | 110, 857 |
| Kzo9I | GATC | 2 cut(s) | 279, 873 |
| LmnI | GCTCC | 1 cut(s) | 770 |
| Lsp1109I | GCAGC | 5 cut(s) | 210, 539, 652, 712, 715 |
| LweI | GCATC | 2 cut(s) | 210, 310 |
| MaeI | CTAG | 6 cut(s) | 17, 131, 284, 545, 602, 995 |
| MaeII | ACGT | 2 cut(s) | 241, 344 |
| MaeIII | GTNAC | 3 cut(s) | 155, 446, 614 |
| MalI | GATC | 2 cut(s) | 281, 875 |
| MboI | GATC | 2 cut(s) | 279, 873 |
| MboII | GAAGA | 5 cut(s) | 47, 549, 728, 822, 1018 |
| MflI | RGATCY | 1 cut(s) | 279 |
| MhlI | GDGCHC | 2 cut(s) | 465, 767 |
| MlsI | TGGCCA | 1 cut(s) | 516 |
| MluCI | AATT | 7 cut(s) | 21, 123, 291, 295, 691, 740, 980 |
| MluNI | TGGCCA | 1 cut(s) | 516 |
| MlyI | GAGTC | 1 cut(s) | 817 |
| MmeI | TCCRAC | 2 cut(s) | 618, 686 |
| Mox20I | TGGCCA | 1 cut(s) | 516 |
| MscI | TGGCCA | 1 cut(s) | 516 |
| MseI | TTAA | 2 cut(s) | 189, 294 |
| Msp20I | TGGCCA | 1 cut(s) | 516 |
| MspI | CCGG | 2 cut(s) | 732, 991 |
| MspR9I | CCNGG | 3 cut(s) | 532, 759, 797 |
| MvaI | CCWGG | 3 cut(s) | 532, 759, 797 |
| MvnI | CGCG | 3 cut(s) | 859, 866, 951 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 560, 590, 863, 930 |
| NdeII | GATC | 2 cut(s) | 279, 873 |
| NlaIII | CATG | 6 cut(s) | 13, 260, 414, 554, 757, 923 |
| NlaIV | GGNNCC | 2 cut(s) | 281, 766 |
| NmuCI | GTSAC | 3 cut(s) | 155, 446, 614 |
| NruI | TCGCGA | 1 cut(s) | 951 |
| NspI | RCATGY | 1 cut(s) | 757 |
| PceI | AGGCCT | 2 cut(s) | 143, 584 |
| PfeI | GAWTC | 2 cut(s) | 647, 782 |
| PflFI | GACNNNGTC | 1 cut(s) | 240 |
| PkrI | GCNGC | 7 cut(s) | 200, 529, 667, 727, 730, 861, 926 |
| PleI | GAGTC | 1 cut(s) | 817 |
| PpsI | GAGTC | 1 cut(s) | 817 |
| PshBI | ATTAAT | 1 cut(s) | 294 |
| Psp6I | CCWGG | 3 cut(s) | 530, 757, 795 |
| PspFI | CCCAGC | 3 cut(s) | 41, 1021, 1041 |
| PspGI | CCWGG | 3 cut(s) | 530, 757, 795 |
| PspN4I | GGNNCC | 2 cut(s) | 281, 766 |
| PspPI | GGNCC | 1 cut(s) | 1044 |
| PstI | CTGCAG | 1 cut(s) | 200 |
| PsuI | RGATCY | 1 cut(s) | 279 |
| PsyI | GACNNNGTC | 1 cut(s) | 240 |
| RruI | TCGCGA | 1 cut(s) | 951 |
| RsaI | GTAC | 1 cut(s) | 986 |
| RsaNI | GTAC | 1 cut(s) | 985 |
| SaqAI | TTAA | 2 cut(s) | 189, 294 |
| SatI | GCNGC | 7 cut(s) | 199, 528, 666, 726, 729, 860, 925 |
| Sau3AI | GATC | 2 cut(s) | 279, 873 |
| Sau96I | GGNCC | 1 cut(s) | 1044 |
| SchI | GAGTC | 1 cut(s) | 817 |
| ScrFI | CCNGG | 3 cut(s) | 532, 759, 797 |
| SduI | GDGCHC | 2 cut(s) | 465, 767 |
| SfaNI | GCATC | 2 cut(s) | 210, 310 |
| SfcI | CTRYAG | 2 cut(s) | 196, 586 |
| SmlI | CTYRAG | 2 cut(s) | 32, 898 |
| SmoI | CTYRAG | 2 cut(s) | 32, 898 |
| Sse9I | AATT | 7 cut(s) | 21, 123, 291, 295, 691, 740, 980 |
| SseBI | AGGCCT | 2 cut(s) | 143, 584 |
| SsiI | CCGC | 5 cut(s) | 859, 866, 889, 924, 933 |
| SspMI | CTAG | 6 cut(s) | 17, 131, 284, 545, 602, 995 |
| StuI | AGGCCT | 2 cut(s) | 143, 584 |
| StyD4I | CCNGG | 3 cut(s) | 530, 757, 795 |
| TaaI | ACNGT | 2 cut(s) | 312, 572 |
| TaiI | ACGT | 2 cut(s) | 244, 347 |
| TaqI | TCGA | 2 cut(s) | 247, 538 |
| TasI | AATT | 7 cut(s) | 21, 123, 291, 295, 691, 740, 980 |
| TatI | WGTACW | 1 cut(s) | 984 |
| TauI | GCSGC | 2 cut(s) | 862, 927 |
| TfiI | GAWTC | 2 cut(s) | 647, 782 |
| Tru1I | TTAA | 2 cut(s) | 189, 294 |
| Tru9I | TTAA | 2 cut(s) | 189, 294 |
| TscAI | CASTG | 2 cut(s) | 575, 845 |
| TseFI | GTSAC | 3 cut(s) | 155, 446, 614 |
| TseI | GCWGC | 5 cut(s) | 198, 527, 665, 725, 728 |
| Tsp45I | GTSAC | 3 cut(s) | 155, 446, 614 |
| TspDTI | ATGAA | 6 cut(s) | 116, 304, 399, 927, 981, 1025 |
| TspGWI | ACGGA | 3 cut(s) | 602, 641, 751 |
| TspRI | CASTG | 2 cut(s) | 575, 845 |
| Tth111I | GACNNNGTC | 1 cut(s) | 240 |
| VneI | GTGCAC | 1 cut(s) | 461 |
| VspI | ATTAAT | 1 cut(s) | 294 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 772 |
| XapI | RAATTY | 3 cut(s) | 21, 123, 740 |
| XbaI | TCTAGA | 1 cut(s) | 130 |
| XceI | RCATGY | 1 cut(s) | 757 |
| XmiI | GTMKAC | 1 cut(s) | 78 |
| XspI | CTAG | 6 cut(s) | 17, 131, 284, 545, 602, 995 |