Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 7 - 61 | 4.5e-08 | Reverse transcriptase-like |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 12 |
| AcsI | RAATTY | 1 cut(s) | 52 |
| AgsI | TTSAA | 3 cut(s) | 92, 156, 161 |
| AluBI | AGCT | 1 cut(s) | 131 |
| AluI | AGCT | 1 cut(s) | 131 |
| Alw26I | GTCTC | 1 cut(s) | 170 |
| AlwI | GGATC | 1 cut(s) | 12 |
| ApoI | RAATTY | 1 cut(s) | 52 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 18, 50 |
| BcoDI | GTCTC | 1 cut(s) | 170 |
| BlpI | GCTNAGC | 1 cut(s) | 99 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 99 |
| BseMII | CTCAG | 1 cut(s) | 90 |
| BsgI | GTGCAG | 1 cut(s) | 84 |
| BsmAI | GTCTC | 1 cut(s) | 170 |
| BsmI | GAATGC | 1 cut(s) | 151 |
| Bsp143I | GATC | 1 cut(s) | 4 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 99 |
| BspCNI | CTCAG | 1 cut(s) | 91 |
| BspPI | GGATC | 1 cut(s) | 12 |
| BssMI | GATC | 1 cut(s) | 4 |
| BstC8I | GCNNGC | 1 cut(s) | 32 |
| BstDEI | CTNAG | 1 cut(s) | 99 |
| BstKTI | GATC | 1 cut(s) | 7 |
| BstMAI | GTCTC | 1 cut(s) | 170 |
| BstMBI | GATC | 1 cut(s) | 4 |
| BstNSI | RCATGY | 1 cut(s) | 107 |
| BtsI | GCAGTG | 1 cut(s) | 84 |
| BtsIMutI | CAGTG | 1 cut(s) | 84 |
| Cac8I | GCNNGC | 1 cut(s) | 32 |
| CviAII | CATG | 1 cut(s) | 104 |
| CviJI | RGCY | 2 cut(s) | 30, 131 |
| CviKI_1 | RGCY | 2 cut(s) | 30, 131 |
| DdeI | CTNAG | 1 cut(s) | 99 |
| DpnI | GATC | 1 cut(s) | 6 |
| DpnII | GATC | 1 cut(s) | 4 |
| FaeI | CATG | 1 cut(s) | 107 |
| FaiI | YATR | 3 cut(s) | 87, 105, 141 |
| FatI | CATG | 1 cut(s) | 103 |
| Hin1II | CATG | 1 cut(s) | 107 |
| HinfI | GANTC | 2 cut(s) | 41, 82 |
| Hpy188III | TCNNGA | 1 cut(s) | 38 |
| HpyAV | CCTTC | 1 cut(s) | 67 |
| HpyCH4V | TGCA | 1 cut(s) | 65 |
| HpyF3I | CTNAG | 1 cut(s) | 99 |
| Hsp92II | CATG | 1 cut(s) | 107 |
| Kzo9I | GATC | 1 cut(s) | 4 |
| LmnI | GCTCC | 1 cut(s) | 148 |
| LpnPI | CCDG | 2 cut(s) | 8, 177 |
| MalI | GATC | 1 cut(s) | 6 |
| MboI | GATC | 1 cut(s) | 4 |
| MluCI | AATT | 3 cut(s) | 52, 136, 156 |
| MlyI | GAGTC | 1 cut(s) | 91 |
| MmeI | TCCRAC | 1 cut(s) | 126 |
| MseI | TTAA | 2 cut(s) | 135, 184 |
| Mva1269I | GAATGC | 1 cut(s) | 151 |
| NdeII | GATC | 1 cut(s) | 4 |
| NlaIII | CATG | 1 cut(s) | 107 |
| NspI | RCATGY | 1 cut(s) | 107 |
| PctI | GAATGC | 1 cut(s) | 151 |
| PfeI | GAWTC | 1 cut(s) | 41 |
| PleI | GAGTC | 1 cut(s) | 90 |
| PpsI | GAGTC | 1 cut(s) | 90 |
| SaqAI | TTAA | 2 cut(s) | 135, 184 |
| Sau3AI | GATC | 1 cut(s) | 4 |
| SchI | GAGTC | 1 cut(s) | 91 |
| SetI | ASST | 2 cut(s) | 133, 166 |
| SgeI | CNNG | 8 cut(s) | 28, 35, 43, 50, 72, 116, 132, 176 |
| Sse9I | AATT | 3 cut(s) | 52, 136, 156 |
| TasI | AATT | 3 cut(s) | 52, 136, 156 |
| TfiI | GAWTC | 1 cut(s) | 41 |
| Tru1I | TTAA | 2 cut(s) | 135, 184 |
| Tru9I | TTAA | 2 cut(s) | 135, 184 |
| TscAI | CASTG | 1 cut(s) | 84 |
| TspRI | CASTG | 1 cut(s) | 84 |
| XapI | RAATTY | 1 cut(s) | 52 |
| XceI | RCATGY | 1 cut(s) | 107 |