ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 808 |
| AclWI | GGATC | 4 cut(s) | 131, 144, 700, 713 |
| AcuI | CTGAAG | 1 cut(s) | 379 |
| AcyI | GRCGYC | 1 cut(s) | 225 |
| AfaI | GTAC | 1 cut(s) | 152 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 119, 221 |
| AflII | CTTAAG | 1 cut(s) | 8 |
| AgsI | TTSAA | 1 cut(s) | 26 |
| AjnI | CCWGG | 1 cut(s) | 118 |
| AluBI | AGCT | 3 cut(s) | 13, 282, 399 |
| AluI | AGCT | 3 cut(s) | 13, 282, 399 |
| Alw21I | GWGCWC | 3 cut(s) | 465, 517, 649 |
| AlwI | GGATC | 4 cut(s) | 131, 144, 700, 713 |
| Ama87I | CYCGRG | 1 cut(s) | 294 |
| AoxI | GGCC | 2 cut(s) | 175, 615 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 671, 703 |
| AspS9I | GGNCC | 4 cut(s) | 175, 212, 616, 837 |
| AsuC2I | CCSGG | 2 cut(s) | 295, 296 |
| AsuHPI | GGTGA | 3 cut(s) | 138, 220, 251 |
| AvaI | CYCGRG | 1 cut(s) | 294 |
| AvaII | GGWCC | 2 cut(s) | 212, 837 |
| BamHI | GGATCC | 2 cut(s) | 136, 705 |
| Bbv12I | GWGCWC | 3 cut(s) | 465, 517, 649 |
| BccI | CCATC | 4 cut(s) | 24, 203, 498, 758 |
| BceAI | ACGGC | 1 cut(s) | 768 |
| BciT130I | CCWGG | 1 cut(s) | 120 |
| BcnI | CCSGG | 2 cut(s) | 295, 296 |
| BfaI | CTAG | 2 cut(s) | 453, 588 |
| BfrI | CTTAAG | 1 cut(s) | 8 |
| Bme1390I | CCNGG | 3 cut(s) | 120, 295, 296 |
| Bme18I | GGWCC | 2 cut(s) | 212, 837 |
| BmeT110I | CYCGRG | 1 cut(s) | 294 |
| BmgT120I | GGNCC | 4 cut(s) | 175, 212, 616, 837 |
| BmiI | GGNNCC | 4 cut(s) | 138, 707, 838, 861 |
| BmrFI | CCNGG | 3 cut(s) | 120, 295, 296 |
| BmsI | GCATC | 2 cut(s) | 362, 819 |
| BpuMI | CCSGG | 2 cut(s) | 295, 296 |
| BsaAI | YACGTR | 1 cut(s) | 677 |
| BsaBI | GATNNNNATC | 1 cut(s) | 474 |
| BsaHI | GRCGYC | 1 cut(s) | 225 |
| BsaJI | CCNNGG | 4 cut(s) | 97, 119, 130, 294 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 119, 221 |
| Bse8I | GATNNNNATC | 1 cut(s) | 474 |
| BseBI | CCWGG | 1 cut(s) | 120 |
| BseDI | CCNNGG | 4 cut(s) | 97, 119, 130, 294 |
| BseGI | GGATG | 1 cut(s) | 109 |
| BseJI | GATNNNNATC | 1 cut(s) | 474 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 119, 221 |
| BseRI | GAGGAG | 2 cut(s) | 424, 639 |
| BsgI | GTGCAG | 1 cut(s) | 645 |
| BshFI | GGCC | 2 cut(s) | 177, 617 |
| BsiHKAI | GWGCWC | 3 cut(s) | 465, 517, 649 |
| BsiHKCI | CYCGRG | 1 cut(s) | 294 |
| BsiSI | CCGG | 1 cut(s) | 295 |
| BslFI | GGGAC | 1 cut(s) | 850 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 119, 221 |
| BsmFI | GGGAC | 1 cut(s) | 850 |
| BsnI | GGCC | 2 cut(s) | 177, 617 |
| BsoBI | CYCGRG | 1 cut(s) | 294 |
| Bsp1286I | GDGCHC | 3 cut(s) | 465, 517, 649 |
| Bsp143I | GATC | 4 cut(s) | 136, 239, 705, 880 |
| Bsp19I | CCATGG | 1 cut(s) | 97 |
| BspACI | CCGC | 1 cut(s) | 808 |
| BspANI | GGCC | 2 cut(s) | 177, 617 |
| BspLI | GGNNCC | 4 cut(s) | 138, 707, 838, 861 |
| BspPI | GGATC | 4 cut(s) | 131, 144, 700, 713 |
| BspQI | GCTCTTC | 1 cut(s) | 831 |
| BspTI | CTTAAG | 1 cut(s) | 8 |
| BssECI | CCNNGG | 4 cut(s) | 97, 119, 130, 294 |
| BssMI | GATC | 4 cut(s) | 136, 239, 705, 880 |
| BssNI | GRCGYC | 1 cut(s) | 225 |
| BssT1I | CCWWGG | 2 cut(s) | 97, 130 |
| Bst2UI | CCWGG | 1 cut(s) | 120 |
| Bst4CI | ACNGT | 1 cut(s) | 150 |
| Bst6I | CTCTTC | 1 cut(s) | 831 |
| BstACI | GRCGYC | 1 cut(s) | 225 |
| BstAFI | CTTAAG | 1 cut(s) | 8 |
| BstBAI | YACGTR | 1 cut(s) | 677 |
| BstDEI | CTNAG | 2 cut(s) | 479, 578 |
| BstDSI | CCRYGG | 1 cut(s) | 97 |
| BstF5I | GGATG | 1 cut(s) | 109 |
| BstKTI | GATC | 4 cut(s) | 139, 242, 708, 883 |
| BstMBI | GATC | 4 cut(s) | 136, 239, 705, 880 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 816 |
| BstNI | CCWGG | 1 cut(s) | 120 |
| BstNSI | RCATGY | 1 cut(s) | 673 |
| BstSCI | CCNGG | 3 cut(s) | 118, 293, 294 |
| BstX2I | RGATCY | 2 cut(s) | 136, 705 |
| BstYI | RGATCY | 2 cut(s) | 136, 705 |
| BsuRI | GGCC | 2 cut(s) | 177, 617 |
| BtgI | CCRYGG | 1 cut(s) | 97 |
| BtsCI | GGATG | 1 cut(s) | 109 |
| Cfr13I | GGNCC | 4 cut(s) | 175, 212, 616, 837 |
| Cfr9I | CCCGGG | 1 cut(s) | 294 |
| CseI | GACGC | 1 cut(s) | 214 |
| Csp6I | GTAC | 1 cut(s) | 151 |
| CviAII | CATG | 7 cut(s) | 46, 98, 200, 388, 467, 670, 830 |
| CviJI | RGCY | 8 cut(s) | 13, 177, 282, 299, 399, 484, 587, 617 |
| CviKI_1 | RGCY | 8 cut(s) | 13, 177, 282, 299, 399, 484, 587, 617 |
| CviQI | GTAC | 1 cut(s) | 151 |
| DdeI | CTNAG | 2 cut(s) | 479, 578 |
| DpnI | GATC | 4 cut(s) | 138, 241, 707, 882 |
| DpnII | GATC | 4 cut(s) | 136, 239, 705, 880 |
| Eam1104I | CTCTTC | 1 cut(s) | 831 |
| EarI | CTCTTC | 1 cut(s) | 831 |
| Eco130I | CCWWGG | 2 cut(s) | 97, 130 |
| Eco47I | GGWCC | 2 cut(s) | 212, 837 |
| Eco57I | CTGAAG | 1 cut(s) | 379 |
| Eco88I | CYCGRG | 1 cut(s) | 294 |
| EcoO109I | RGGNCCY | 2 cut(s) | 175, 837 |
| EcoRII | CCWGG | 1 cut(s) | 118 |
| EcoT14I | CCWWGG | 2 cut(s) | 97, 130 |
| ErhI | CCWWGG | 2 cut(s) | 97, 130 |
| FaeI | CATG | 7 cut(s) | 49, 101, 203, 391, 470, 673, 833 |
| FaqI | GGGAC | 1 cut(s) | 850 |
| FatI | CATG | 7 cut(s) | 45, 97, 199, 387, 466, 669, 829 |
| FokI | GGATG | 1 cut(s) | 96 |
| FspBI | CTAG | 2 cut(s) | 453, 588 |
| HaeIII | GGCC | 2 cut(s) | 177, 617 |
| HapII | CCGG | 1 cut(s) | 295 |
| HgaI | GACGC | 1 cut(s) | 214 |
| Hin1I | GRCGYC | 1 cut(s) | 225 |
| Hin1II | CATG | 7 cut(s) | 49, 101, 203, 391, 470, 673, 833 |
| HindIII | AAGCTT | 1 cut(s) | 11 |
| HinfI | GANTC | 5 cut(s) | 89, 256, 425, 456, 598 |
| HpaII | CCGG | 1 cut(s) | 295 |
| HphI | GGTGA | 3 cut(s) | 138, 220, 251 |
| Hpy166II | GTNNAC | 3 cut(s) | 37, 215, 370 |
| Hpy188I | TCNGA | 1 cut(s) | 603 |
| Hpy188III | TCNNGA | 1 cut(s) | 453 |
| Hpy8I | GTNNAC | 3 cut(s) | 37, 215, 370 |
| HpyAV | CCTTC | 1 cut(s) | 301 |
| HpyCH4III | ACNGT | 1 cut(s) | 150 |
| HpyCH4IV | ACGT | 3 cut(s) | 538, 628, 676 |
| HpyCH4V | TGCA | 3 cut(s) | 272, 662, 692 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 816 |
| HpyF3I | CTNAG | 2 cut(s) | 479, 578 |
| HpySE526I | ACGT | 3 cut(s) | 538, 628, 676 |
| Hsp92I | GRCGYC | 1 cut(s) | 225 |
| Hsp92II | CATG | 7 cut(s) | 49, 101, 203, 391, 470, 673, 833 |
| Kzo9I | GATC | 4 cut(s) | 136, 239, 705, 880 |
| LguI | GCTCTTC | 1 cut(s) | 831 |
| LmnI | GCTCC | 1 cut(s) | 652 |
| LpnPI | CCDG | 5 cut(s) | 105, 132, 308, 342, 385 |
| LweI | GCATC | 2 cut(s) | 362, 819 |
| MaeI | CTAG | 2 cut(s) | 453, 588 |
| MaeII | ACGT | 3 cut(s) | 538, 628, 676 |
| MaeIII | GTNAC | 5 cut(s) | 123, 226, 257, 677, 899 |
| MalI | GATC | 4 cut(s) | 138, 241, 707, 882 |
| MboI | GATC | 4 cut(s) | 136, 239, 705, 880 |
| MboII | GAAGA | 3 cut(s) | 152, 740, 818 |
| MfeI | CAATTG | 1 cut(s) | 798 |
| MflI | RGATCY | 2 cut(s) | 136, 705 |
| MhlI | GDGCHC | 3 cut(s) | 465, 517, 649 |
| MluCI | AATT | 6 cut(s) | 63, 321, 492, 523, 572, 798 |
| MlyI | GAGTC | 2 cut(s) | 265, 465 |
| MseI | TTAA | 7 cut(s) | 9, 84, 491, 522, 531, 606, 654 |
| MslI | CAYNNNNRTG | 3 cut(s) | 44, 381, 468 |
| MspA1I | CMGCKG | 1 cut(s) | 399 |
| MspCI | CTTAAG | 1 cut(s) | 8 |
| MspI | CCGG | 1 cut(s) | 295 |
| MspR9I | CCNGG | 3 cut(s) | 120, 295, 296 |
| MunI | CAATTG | 1 cut(s) | 798 |
| MvaI | CCWGG | 1 cut(s) | 120 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 816 |
| NciI | CCSGG | 2 cut(s) | 295, 296 |
| NcoI | CCATGG | 1 cut(s) | 97 |
| NdeII | GATC | 4 cut(s) | 136, 239, 705, 880 |
| NlaIII | CATG | 7 cut(s) | 49, 101, 203, 391, 470, 673, 833 |
| NlaIV | GGNNCC | 4 cut(s) | 138, 707, 838, 861 |
| NmuCI | GTSAC | 3 cut(s) | 226, 257, 677 |
| NspI | RCATGY | 1 cut(s) | 673 |
| PciSI | GCTCTTC | 1 cut(s) | 831 |
| PfeI | GAWTC | 3 cut(s) | 89, 425, 598 |
| PleI | GAGTC | 2 cut(s) | 264, 464 |
| PpsI | GAGTC | 2 cut(s) | 264, 464 |
| Ppu21I | YACGTR | 1 cut(s) | 677 |
| PpuMI | RGGWCCY | 1 cut(s) | 837 |
| Psp5II | RGGWCCY | 1 cut(s) | 837 |
| Psp6I | CCWGG | 1 cut(s) | 118 |
| PspGI | CCWGG | 1 cut(s) | 118 |
| PspN4I | GGNNCC | 4 cut(s) | 138, 707, 838, 861 |
| PspPI | GGNCC | 4 cut(s) | 175, 212, 616, 837 |
| PspPPI | RGGWCCY | 1 cut(s) | 837 |
| PsuI | RGATCY | 2 cut(s) | 136, 705 |
| PvuII | CAGCTG | 1 cut(s) | 399 |
| RsaI | GTAC | 1 cut(s) | 152 |
| RsaNI | GTAC | 1 cut(s) | 151 |
| RseI | CAYNNNNRTG | 3 cut(s) | 44, 381, 468 |
| SapI | GCTCTTC | 1 cut(s) | 831 |
| SaqAI | TTAA | 7 cut(s) | 9, 84, 491, 522, 531, 606, 654 |
| Sau3AI | GATC | 4 cut(s) | 136, 239, 705, 880 |
| Sau96I | GGNCC | 4 cut(s) | 175, 212, 616, 837 |
| SchI | GAGTC | 2 cut(s) | 265, 465 |
| ScrFI | CCNGG | 3 cut(s) | 120, 295, 296 |
| SduI | GDGCHC | 3 cut(s) | 465, 517, 649 |
| SfaNI | GCATC | 2 cut(s) | 362, 819 |
| SinI | GGWCC | 2 cut(s) | 212, 837 |
| SmaI | CCCGGG | 1 cut(s) | 296 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 44, 381, 468 |
| SmlI | CTYRAG | 1 cut(s) | 8 |
| SmoI | CTYRAG | 1 cut(s) | 8 |
| SrfI | GCCCGGGC | 1 cut(s) | 296 |
| Sse9I | AATT | 6 cut(s) | 63, 321, 492, 523, 572, 798 |
| SsiI | CCGC | 1 cut(s) | 808 |
| SspMI | CTAG | 2 cut(s) | 453, 588 |
| StyD4I | CCNGG | 3 cut(s) | 118, 293, 294 |
| StyI | CCWWGG | 2 cut(s) | 97, 130 |
| TaaI | ACNGT | 1 cut(s) | 150 |
| TaiI | ACGT | 3 cut(s) | 541, 631, 679 |
| TaqI | TCGA | 1 cut(s) | 459 |
| TasI | AATT | 6 cut(s) | 63, 321, 492, 523, 572, 798 |
| TfiI | GAWTC | 3 cut(s) | 89, 425, 598 |
| Tru1I | TTAA | 7 cut(s) | 9, 84, 491, 522, 531, 606, 654 |
| Tru9I | TTAA | 7 cut(s) | 9, 84, 491, 522, 531, 606, 654 |
| TseFI | GTSAC | 3 cut(s) | 226, 257, 677 |
| Tsp45I | GTSAC | 3 cut(s) | 226, 257, 677 |
| TspDTI | ATGAA | 3 cut(s) | 216, 320, 818 |
| TspMI | CCCGGG | 1 cut(s) | 294 |
| Vha464I | CTTAAG | 1 cut(s) | 8 |
| VpaK11BI | GGWCC | 2 cut(s) | 212, 837 |
| XbaI | TCTAGA | 1 cut(s) | 452 |
| XceI | RCATGY | 1 cut(s) | 673 |
| XmaI | CCCGGG | 1 cut(s) | 294 |
| XspI | CTAG | 2 cut(s) | 453, 588 |