Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 14 - 134 | 9.7e-20 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 571 |
| AatII | GACGTC | 2 cut(s) | 451, 477 |
| Acc16I | TGCGCA | 1 cut(s) | 150 |
| Acc65I | GGTACC | 1 cut(s) | 203 |
| AccB1I | GGYRCC | 2 cut(s) | 203, 498 |
| AccBSI | CCGCTC | 1 cut(s) | 527 |
| AciI | CCGC | 3 cut(s) | 452, 470, 527 |
| AcsI | RAATTY | 1 cut(s) | 577 |
| AcuI | CTGAAG | 1 cut(s) | 630 |
| AcyI | GRCGYC | 4 cut(s) | 62, 448, 474, 540 |
| AdeI | CACNNNGTG | 1 cut(s) | 157 |
| AfaI | GTAC | 2 cut(s) | 205, 512 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 23, 270, 271, 495 |
| AflIII | ACRYGT | 2 cut(s) | 358, 566 |
| AgsI | TTSAA | 3 cut(s) | 176, 356, 644 |
| AjiI | CACGTC | 1 cut(s) | 567 |
| AjnI | CCWGG | 1 cut(s) | 402 |
| Alw26I | GTCTC | 2 cut(s) | 98, 197 |
| Ama87I | CYCGRG | 1 cut(s) | 522 |
| AoxI | GGCC | 1 cut(s) | 134 |
| ApeKI | GCWGC | 1 cut(s) | 260 |
| ApoI | RAATTY | 1 cut(s) | 577 |
| Asp718I | GGTACC | 1 cut(s) | 203 |
| AspA2I | CCTAGG | 1 cut(s) | 265 |
| AspLEI | GCGC | 1 cut(s) | 151 |
| AsuNHI | GCTAGC | 1 cut(s) | 394 |
| AvaI | CYCGRG | 1 cut(s) | 522 |
| AvrII | CCTAGG | 1 cut(s) | 265 |
| BanI | GGYRCC | 2 cut(s) | 203, 498 |
| BbvI | GCAGC | 1 cut(s) | 247 |
| BccI | CCATC | 1 cut(s) | 41 |
| BciT130I | CCWGG | 1 cut(s) | 404 |
| BcoDI | GTCTC | 2 cut(s) | 98, 197 |
| BfaI | CTAG | 5 cut(s) | 266, 395, 422, 534, 582 |
| BisI | GCNGC | 1 cut(s) | 261 |
| BlnI | CCTAGG | 1 cut(s) | 265 |
| BlsI | GCNGC | 1 cut(s) | 262 |
| Bme1390I | CCNGG | 1 cut(s) | 404 |
| BmeT110I | CYCGRG | 1 cut(s) | 522 |
| BmgBI | CACGTC | 1 cut(s) | 567 |
| BmiI | GGNNCC | 2 cut(s) | 205, 500 |
| BmrFI | CCNGG | 1 cut(s) | 404 |
| BmtI | GCTAGC | 1 cut(s) | 398 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 177, 209 |
| Bsa29I | ATCGAT | 1 cut(s) | 648 |
| BsaHI | GRCGYC | 4 cut(s) | 62, 448, 474, 540 |
| BsaI | GGTCTC | 1 cut(s) | 197 |
| BsaJI | CCNNGG | 1 cut(s) | 265 |
| BsaWI | WCCGGW | 1 cut(s) | 495 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 272, 302 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 23, 270, 271, 495 |
| Bse118I | RCCGGY | 3 cut(s) | 136, 589, 656 |
| BseBI | CCWGG | 1 cut(s) | 404 |
| BseCI | ATCGAT | 1 cut(s) | 648 |
| BseDI | CCNNGG | 1 cut(s) | 265 |
| BseGI | GGATG | 2 cut(s) | 77, 441 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 23, 270, 271, 495 |
| BseRI | GAGGAG | 3 cut(s) | 290, 293, 478 |
| BseXI | GCAGC | 1 cut(s) | 247 |
| BsgI | GTGCAG | 1 cut(s) | 202 |
| BshFI | GGCC | 1 cut(s) | 136 |
| BshNI | GGYRCC | 2 cut(s) | 203, 498 |
| BshVI | ATCGAT | 1 cut(s) | 648 |
| BsiHKCI | CYCGRG | 1 cut(s) | 522 |
| BsiSI | CCGG | 4 cut(s) | 137, 496, 590, 657 |
| BslFI | GGGAC | 1 cut(s) | 461 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 23, 270, 271, 495 |
| BsmAI | GTCTC | 2 cut(s) | 98, 197 |
| BsmFI | GGGAC | 1 cut(s) | 461 |
| BsnI | GGCC | 1 cut(s) | 136 |
| Bso31I | GGTCTC | 1 cut(s) | 197 |
| BsoBI | CYCGRG | 1 cut(s) | 522 |
| Bsp143I | GATC | 3 cut(s) | 547, 596, 649 |
| BspACI | CCGC | 3 cut(s) | 452, 470, 527 |
| BspANI | GGCC | 1 cut(s) | 136 |
| BspDI | ATCGAT | 1 cut(s) | 648 |
| BspLI | GGNNCC | 2 cut(s) | 205, 500 |
| BspOI | GCTAGC | 1 cut(s) | 398 |
| BspT107I | GGYRCC | 2 cut(s) | 203, 498 |
| BspTNI | GGTCTC | 1 cut(s) | 197 |
| BsrBI | CCGCTC | 1 cut(s) | 527 |
| BsrFI | RCCGGY | 3 cut(s) | 136, 589, 656 |
| BssAI | RCCGGY | 3 cut(s) | 136, 589, 656 |
| BssECI | CCNNGG | 1 cut(s) | 265 |
| BssMI | GATC | 3 cut(s) | 547, 596, 649 |
| BssNI | GRCGYC | 4 cut(s) | 62, 448, 474, 540 |
| BssT1I | CCWWGG | 1 cut(s) | 265 |
| Bst2UI | CCWGG | 1 cut(s) | 404 |
| Bst4CI | ACNGT | 1 cut(s) | 510 |
| Bst6I | CTCTTC | 1 cut(s) | 563 |
| BstACI | GRCGYC | 4 cut(s) | 62, 448, 474, 540 |
| BstC8I | GCNNGC | 5 cut(s) | 147, 181, 396, 591, 658 |
| BstF5I | GGATG | 2 cut(s) | 77, 441 |
| BstHHI | GCGC | 1 cut(s) | 151 |
| BstKTI | GATC | 3 cut(s) | 550, 599, 652 |
| BstMAI | GTCTC | 2 cut(s) | 98, 197 |
| BstMBI | GATC | 3 cut(s) | 547, 596, 649 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 142 |
| BstNI | CCWGG | 1 cut(s) | 404 |
| BstNSI | RCATGY | 2 cut(s) | 149, 362 |
| BstSCI | CCNGG | 1 cut(s) | 402 |
| BstV1I | GCAGC | 1 cut(s) | 247 |
| Bsu15I | ATCGAT | 1 cut(s) | 648 |
| BsuRI | GGCC | 1 cut(s) | 136 |
| BsuTUI | ATCGAT | 1 cut(s) | 648 |
| BtrI | CACGTC | 1 cut(s) | 567 |
| BtsCI | GGATG | 2 cut(s) | 77, 441 |
| Cac8I | GCNNGC | 5 cut(s) | 147, 181, 396, 591, 658 |
| CfoI | GCGC | 1 cut(s) | 151 |
| Cfr10I | RCCGGY | 3 cut(s) | 136, 589, 656 |
| ClaI | ATCGAT | 1 cut(s) | 648 |
| CseI | GACGC | 2 cut(s) | 51, 529 |
| CsiI | ACCWGGT | 1 cut(s) | 402 |
| Csp6I | GTAC | 2 cut(s) | 204, 511 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 197, 232 |
| CviAII | CATG | 3 cut(s) | 146, 328, 359 |
| CviJI | RGCY | 5 cut(s) | 51, 136, 260, 335, 394 |
| CviKI_1 | RGCY | 5 cut(s) | 51, 136, 260, 335, 394 |
| CviQI | GTAC | 2 cut(s) | 204, 511 |
| DpnI | GATC | 3 cut(s) | 549, 598, 651 |
| DpnII | GATC | 3 cut(s) | 547, 596, 649 |
| DraIII | CACNNNGTG | 1 cut(s) | 157 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 571 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 571 |
| Eam1104I | CTCTTC | 1 cut(s) | 563 |
| EarI | CTCTTC | 1 cut(s) | 563 |
| Eco130I | CCWWGG | 1 cut(s) | 265 |
| Eco31I | GGTCTC | 1 cut(s) | 197 |
| Eco57I | CTGAAG | 1 cut(s) | 630 |
| Eco88I | CYCGRG | 1 cut(s) | 522 |
| EcoRI | GAATTC | 1 cut(s) | 577 |
| EcoRII | CCWGG | 1 cut(s) | 402 |
| EcoT14I | CCWWGG | 1 cut(s) | 265 |
| ErhI | CCWWGG | 1 cut(s) | 265 |
| FaeI | CATG | 3 cut(s) | 149, 331, 362 |
| FaiI | YATR | 6 cut(s) | 147, 167, 310, 329, 360, 413 |
| FaqI | GGGAC | 1 cut(s) | 461 |
| FatI | CATG | 3 cut(s) | 145, 327, 358 |
| Fnu4HI | GCNGC | 1 cut(s) | 261 |
| FokI | GGATG | 2 cut(s) | 84, 448 |
| Fsp4HI | GCNGC | 1 cut(s) | 261 |
| FspAI | RTGCGCAY | 1 cut(s) | 150 |
| FspBI | CTAG | 5 cut(s) | 266, 395, 422, 534, 582 |
| FspI | TGCGCA | 1 cut(s) | 150 |
| GlaI | GCGC | 1 cut(s) | 150 |
| GluI | GCNGC | 1 cut(s) | 261 |
| HaeIII | GGCC | 1 cut(s) | 136 |
| HapII | CCGG | 4 cut(s) | 137, 496, 590, 657 |
| HgaI | GACGC | 2 cut(s) | 51, 529 |
| HhaI | GCGC | 1 cut(s) | 151 |
| Hin1I | GRCGYC | 4 cut(s) | 62, 448, 474, 540 |
| Hin1II | CATG | 3 cut(s) | 149, 331, 362 |
| Hin6I | GCGC | 1 cut(s) | 149 |
| HinP1I | GCGC | 1 cut(s) | 149 |
| HinfI | GANTC | 1 cut(s) | 186 |
| HpaII | CCGG | 4 cut(s) | 137, 496, 590, 657 |
| Hpy166II | GTNNAC | 2 cut(s) | 26, 446 |
| Hpy188I | TCNGA | 2 cut(s) | 292, 610 |
| Hpy188III | TCNNGA | 3 cut(s) | 368, 422, 562 |
| Hpy8I | GTNNAC | 2 cut(s) | 26, 446 |
| Hpy99I | CGWCG | 4 cut(s) | 507, 545, 568, 577 |
| HpyAV | CCTTC | 2 cut(s) | 325, 650 |
| HpyCH4III | ACNGT | 1 cut(s) | 510 |
| HpyCH4IV | ACGT | 3 cut(s) | 448, 474, 566 |
| HpyCH4V | TGCA | 2 cut(s) | 122, 183 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 142 |
| HpySE526I | ACGT | 3 cut(s) | 448, 474, 566 |
| Hsp92I | GRCGYC | 4 cut(s) | 62, 448, 474, 540 |
| Hsp92II | CATG | 3 cut(s) | 149, 331, 362 |
| HspAI | GCGC | 1 cut(s) | 149 |
| KpnI | GGTACC | 1 cut(s) | 207 |
| KroI | GCCGGC | 2 cut(s) | 589, 656 |
| KroNI | GCCGGC | 2 cut(s) | 591, 658 |
| Kzo9I | GATC | 3 cut(s) | 547, 596, 649 |
| LpnPI | CCDG | 6 cut(s) | 93, 150, 389, 416, 509, 603 |
| Lsp1109I | GCAGC | 1 cut(s) | 247 |
| MabI | ACCWGGT | 1 cut(s) | 402 |
| MaeI | CTAG | 5 cut(s) | 266, 395, 422, 534, 582 |
| MaeII | ACGT | 3 cut(s) | 448, 474, 566 |
| MalI | GATC | 3 cut(s) | 549, 598, 651 |
| MbiI | CCGCTC | 1 cut(s) | 527 |
| MboI | GATC | 3 cut(s) | 547, 596, 649 |
| MboII | GAAGA | 1 cut(s) | 550 |
| MluCI | AATT | 3 cut(s) | 117, 351, 577 |
| MlyI | GAGTC | 1 cut(s) | 195 |
| MmeI | TCCRAC | 1 cut(s) | 197 |
| MroNI | GCCGGC | 2 cut(s) | 589, 656 |
| MseI | TTAA | 2 cut(s) | 161, 234 |
| MspI | CCGG | 4 cut(s) | 137, 496, 590, 657 |
| MspR9I | CCNGG | 1 cut(s) | 404 |
| MvaI | CCWGG | 1 cut(s) | 404 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 142 |
| NaeI | GCCGGC | 2 cut(s) | 591, 658 |
| NdeII | GATC | 3 cut(s) | 547, 596, 649 |
| NgoMIV | GCCGGC | 2 cut(s) | 589, 656 |
| NheI | GCTAGC | 1 cut(s) | 394 |
| NlaIII | CATG | 3 cut(s) | 149, 331, 362 |
| NlaIV | GGNNCC | 2 cut(s) | 205, 500 |
| NsbI | TGCGCA | 1 cut(s) | 150 |
| NspI | RCATGY | 2 cut(s) | 149, 362 |
| PaeI | GCATGC | 1 cut(s) | 149 |
| PciI | ACATGT | 1 cut(s) | 358 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 59, 569, 572 |
| PdiI | GCCGGC | 2 cut(s) | 591, 658 |
| PflFI | GACNNNGTC | 1 cut(s) | 604 |
| PkrI | GCNGC | 1 cut(s) | 262 |
| PleI | GAGTC | 1 cut(s) | 194 |
| PpsI | GAGTC | 1 cut(s) | 194 |
| PscI | ACATGT | 1 cut(s) | 358 |
| Psp6I | CCWGG | 1 cut(s) | 402 |
| PspGI | CCWGG | 1 cut(s) | 402 |
| PspN4I | GGNNCC | 2 cut(s) | 205, 500 |
| PsyI | GACNNNGTC | 1 cut(s) | 604 |
| RsaI | GTAC | 2 cut(s) | 205, 512 |
| RsaNI | GTAC | 2 cut(s) | 204, 511 |
| SaqAI | TTAA | 2 cut(s) | 161, 234 |
| SatI | GCNGC | 1 cut(s) | 261 |
| Sau3AI | GATC | 3 cut(s) | 547, 596, 649 |
| SchI | GAGTC | 1 cut(s) | 195 |
| ScrFI | CCNGG | 1 cut(s) | 404 |
| SexAI | ACCWGGT | 1 cut(s) | 402 |
| SphI | GCATGC | 1 cut(s) | 149 |
| Sse9I | AATT | 3 cut(s) | 117, 351, 577 |
| SsiI | CCGC | 3 cut(s) | 452, 470, 527 |
| SspI | AATATT | 1 cut(s) | 43 |
| SspMI | CTAG | 5 cut(s) | 266, 395, 422, 534, 582 |
| StyD4I | CCNGG | 1 cut(s) | 402 |
| StyI | CCWWGG | 1 cut(s) | 265 |
| TaaI | ACNGT | 1 cut(s) | 510 |
| TaiI | ACGT | 3 cut(s) | 451, 477, 569 |
| TaqI | TCGA | 4 cut(s) | 563, 575, 599, 648 |
| TaqII | GACCGA | 1 cut(s) | 179 |
| TasI | AATT | 3 cut(s) | 117, 351, 577 |
| Tru1I | TTAA | 2 cut(s) | 161, 234 |
| Tru9I | TTAA | 2 cut(s) | 161, 234 |
| TseI | GCWGC | 1 cut(s) | 260 |
| TspDTI | ATGAA | 1 cut(s) | 344 |
| TspGWI | ACGGA | 5 cut(s) | 84, 145, 471, 481, 561 |
| Tth111I | GACNNNGTC | 1 cut(s) | 604 |
| XapI | RAATTY | 1 cut(s) | 577 |
| XbaI | TCTAGA | 1 cut(s) | 421 |
| XceI | RCATGY | 2 cut(s) | 149, 362 |
| XmaJI | CCTAGG | 1 cut(s) | 265 |
| XspI | CTAG | 5 cut(s) | 266, 395, 422, 534, 582 |
| ZraI | GACGTC | 2 cut(s) | 449, 475 |