Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 146 |
| AciI | CCGC | 1 cut(s) | 346 |
| AclWI | GGATC | 3 cut(s) | 627, 640, 808 |
| AcsI | RAATTY | 3 cut(s) | 440, 616, 998 |
| AcuI | CTGAAG | 2 cut(s) | 123, 825 |
| AfaI | GTAC | 4 cut(s) | 216, 556, 663, 723 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 340, 362 |
| AgsI | TTSAA | 4 cut(s) | 121, 610, 845, 946 |
| AhlI | ACTAGT | 1 cut(s) | 740 |
| Alw21I | GWGCWC | 1 cut(s) | 286 |
| Alw26I | GTCTC | 2 cut(s) | 99, 806 |
| AlwI | GGATC | 3 cut(s) | 627, 640, 808 |
| Ama87I | CYCGRG | 3 cut(s) | 567, 777, 882 |
| AoxI | GGCC | 2 cut(s) | 343, 879 |
| ApeKI | GCWGC | 3 cut(s) | 691, 985, 1040 |
| ApoI | RAATTY | 3 cut(s) | 440, 616, 998 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 805, 837 |
| AspA2I | CCTAGG | 1 cut(s) | 334 |
| AspS9I | GGNCC | 2 cut(s) | 343, 880 |
| AsuC2I | CCSGG | 2 cut(s) | 883, 884 |
| AsuHPI | GGTGA | 3 cut(s) | 311, 350, 821 |
| AsuNHI | GCTAGC | 1 cut(s) | 19 |
| AvaI | CYCGRG | 3 cut(s) | 567, 777, 882 |
| AvrII | CCTAGG | 1 cut(s) | 334 |
| BamHI | GGATCC | 1 cut(s) | 632 |
| BanII | GRGCYC | 1 cut(s) | 1021 |
| BbsI | GAAGAC | 1 cut(s) | 707 |
| Bbv12I | GWGCWC | 1 cut(s) | 286 |
| BbvI | GCAGC | 3 cut(s) | 703, 997, 1027 |
| BccI | CCATC | 4 cut(s) | 404, 408, 941, 952 |
| BclI | TGATCA | 1 cut(s) | 498 |
| BcnI | CCSGG | 2 cut(s) | 883, 884 |
| BcoDI | GTCTC | 2 cut(s) | 99, 806 |
| BcuI | ACTAGT | 1 cut(s) | 740 |
| BfaI | CTAG | 6 cut(s) | 20, 68, 335, 407, 741, 1048 |
| BisI | GCNGC | 4 cut(s) | 346, 692, 986, 1041 |
| BlnI | CCTAGG | 1 cut(s) | 334 |
| BlsI | GCNGC | 4 cut(s) | 347, 693, 987, 1042 |
| Bme1390I | CCNGG | 2 cut(s) | 883, 884 |
| BmeT110I | CYCGRG | 3 cut(s) | 567, 777, 882 |
| BmgT120I | GGNCC | 2 cut(s) | 343, 880 |
| BmiI | GGNNCC | 1 cut(s) | 634 |
| BmrFI | CCNGG | 2 cut(s) | 883, 884 |
| BmsI | GCATC | 3 cut(s) | 380, 595, 670 |
| BmtI | GCTAGC | 1 cut(s) | 23 |
| BpiI | GAAGAC | 1 cut(s) | 707 |
| BpuEI | CTTGAG | 2 cut(s) | 397, 957 |
| BpuMI | CCSGG | 2 cut(s) | 883, 884 |
| BsaI | GGTCTC | 1 cut(s) | 99 |
| BsaJI | CCNNGG | 4 cut(s) | 334, 361, 566, 882 |
| BsaWI | WCCGGW | 1 cut(s) | 620 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 340, 362 |
| Bse3DI | GCAATG | 1 cut(s) | 980 |
| BseDI | CCNNGG | 4 cut(s) | 334, 361, 566, 882 |
| BseGI | GGATG | 4 cut(s) | 371, 419, 586, 960 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 340, 362 |
| BseMI | GCAATG | 1 cut(s) | 980 |
| BseRI | GAGGAG | 2 cut(s) | 189, 381 |
| BseXI | GCAGC | 3 cut(s) | 703, 997, 1027 |
| BshFI | GGCC | 2 cut(s) | 345, 881 |
| BsiHKAI | GWGCWC | 1 cut(s) | 286 |
| BsiHKCI | CYCGRG | 3 cut(s) | 567, 777, 882 |
| BsiSI | CCGG | 2 cut(s) | 621, 883 |
| BslFI | GGGAC | 3 cut(s) | 461, 487, 584 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 340, 362 |
| BsmAI | GTCTC | 2 cut(s) | 99, 806 |
| BsmFI | GGGAC | 3 cut(s) | 461, 487, 584 |
| BsmI | GAATGC | 1 cut(s) | 1043 |
| BsnI | GGCC | 2 cut(s) | 345, 881 |
| Bso31I | GGTCTC | 1 cut(s) | 99 |
| BsoBI | CYCGRG | 3 cut(s) | 567, 777, 882 |
| Bsp1286I | GDGCHC | 2 cut(s) | 286, 1021 |
| Bsp1407I | TGTACA | 1 cut(s) | 661 |
| Bsp143I | GATC | 3 cut(s) | 498, 632, 800 |
| BspACI | CCGC | 1 cut(s) | 346 |
| BspANI | GGCC | 2 cut(s) | 345, 881 |
| BspLI | GGNNCC | 1 cut(s) | 634 |
| BspOI | GCTAGC | 1 cut(s) | 23 |
| BspPI | GGATC | 3 cut(s) | 627, 640, 808 |
| BspTNI | GGTCTC | 1 cut(s) | 99 |
| BsrDI | GCAATG | 1 cut(s) | 980 |
| BsrGI | TGTACA | 1 cut(s) | 661 |
| BssECI | CCNNGG | 4 cut(s) | 334, 361, 566, 882 |
| BssMI | GATC | 3 cut(s) | 498, 632, 800 |
| BssT1I | CCWWGG | 2 cut(s) | 334, 361 |
| BstAUI | TGTACA | 1 cut(s) | 661 |
| BstC8I | GCNNGC | 5 cut(s) | 21, 152, 579, 753, 757 |
| BstDEI | CTNAG | 1 cut(s) | 167 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 338 |
| BstF5I | GGATG | 4 cut(s) | 371, 419, 586, 960 |
| BstKTI | GATC | 3 cut(s) | 501, 635, 803 |
| BstMAI | GTCTC | 2 cut(s) | 99, 806 |
| BstMBI | GATC | 3 cut(s) | 498, 632, 800 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 583 |
| BstNSI | RCATGY | 2 cut(s) | 386, 759 |
| BstSCI | CCNGG | 2 cut(s) | 881, 882 |
| BstV1I | GCAGC | 3 cut(s) | 703, 997, 1027 |
| BstV2I | GAAGAC | 1 cut(s) | 707 |
| BstX2I | RGATCY | 2 cut(s) | 632, 800 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 733 |
| BstYI | RGATCY | 2 cut(s) | 632, 800 |
| BsuRI | GGCC | 2 cut(s) | 345, 881 |
| BtsCI | GGATG | 4 cut(s) | 371, 419, 586, 960 |
| Cac8I | GCNNGC | 5 cut(s) | 21, 152, 579, 753, 757 |
| Cfr13I | GGNCC | 2 cut(s) | 343, 880 |
| Cfr9I | CCCGGG | 1 cut(s) | 882 |
| Csp6I | GTAC | 4 cut(s) | 215, 555, 662, 722 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 275, 310 |
| CviAII | CATG | 5 cut(s) | 56, 383, 582, 649, 756 |
| CviQI | GTAC | 4 cut(s) | 215, 555, 662, 722 |
| DdeI | CTNAG | 1 cut(s) | 167 |
| DpnI | GATC | 3 cut(s) | 500, 634, 802 |
| DpnII | GATC | 3 cut(s) | 498, 632, 800 |
| Eco130I | CCWWGG | 2 cut(s) | 334, 361 |
| Eco24I | GRGCYC | 1 cut(s) | 1021 |
| Eco31I | GGTCTC | 1 cut(s) | 99 |
| Eco57I | CTGAAG | 2 cut(s) | 123, 825 |
| Eco88I | CYCGRG | 3 cut(s) | 567, 777, 882 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 338 |
| EcoT14I | CCWWGG | 2 cut(s) | 334, 361 |
| EcoT22I | ATGCAT | 1 cut(s) | 685 |
| EcoT38I | GRGCYC | 1 cut(s) | 1021 |
| ErhI | CCWWGG | 2 cut(s) | 334, 361 |
| FaeI | CATG | 5 cut(s) | 59, 386, 585, 652, 759 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 174, 206, 587, 619 |
| FaqI | GGGAC | 3 cut(s) | 461, 487, 584 |
| FatI | CATG | 5 cut(s) | 55, 382, 581, 648, 755 |
| FauNDI | CATATG | 2 cut(s) | 707, 858 |
| FbaI | TGATCA | 1 cut(s) | 498 |
| Fnu4HI | GCNGC | 4 cut(s) | 346, 692, 986, 1041 |
| FokI | GGATG | 4 cut(s) | 358, 426, 573, 967 |
| FriOI | GRGCYC | 1 cut(s) | 1021 |
| Fsp4HI | GCNGC | 4 cut(s) | 346, 692, 986, 1041 |
| FspBI | CTAG | 6 cut(s) | 20, 68, 335, 407, 741, 1048 |
| GluI | GCNGC | 4 cut(s) | 346, 692, 986, 1041 |
| HaeIII | GGCC | 2 cut(s) | 345, 881 |
| HapII | CCGG | 2 cut(s) | 621, 883 |
| Hin1II | CATG | 5 cut(s) | 59, 386, 585, 652, 759 |
| HindIII | AAGCTT | 2 cut(s) | 105, 575 |
| HinfI | GANTC | 2 cut(s) | 187, 845 |
| HpaII | CCGG | 2 cut(s) | 621, 883 |
| HphI | GGTGA | 3 cut(s) | 311, 350, 821 |
| Hpy166II | GTNNAC | 1 cut(s) | 664 |
| Hpy188I | TCNGA | 1 cut(s) | 805 |
| Hpy188III | TCNNGA | 3 cut(s) | 569, 697, 1024 |
| Hpy8I | GTNNAC | 1 cut(s) | 664 |
| HpyAV | CCTTC | 5 cut(s) | 115, 362, 366, 592, 800 |
| HpyCH4V | TGCA | 7 cut(s) | 206, 521, 581, 683, 755, 985, 1043 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 583 |
| HpyF3I | CTNAG | 1 cut(s) | 167 |
| Hsp92II | CATG | 5 cut(s) | 59, 386, 585, 652, 759 |
| Ksp22I | TGATCA | 1 cut(s) | 498 |
| Kzo9I | GATC | 3 cut(s) | 498, 632, 800 |
| LmnI | GCTCC | 3 cut(s) | 253, 368, 886 |
| LpnPI | CCDG | 9 cut(s) | 136, 236, 531, 571, 634, 682, 773, 896, 1009 |
| Lsp1109I | GCAGC | 3 cut(s) | 703, 997, 1027 |
| LweI | GCATC | 3 cut(s) | 380, 595, 670 |
| MaeI | CTAG | 6 cut(s) | 20, 68, 335, 407, 741, 1048 |
| MaeIII | GTNAC | 4 cut(s) | 638, 736, 790, 830 |
| MalI | GATC | 3 cut(s) | 500, 634, 802 |
| MboI | GATC | 3 cut(s) | 498, 632, 800 |
| MboII | GAAGA | 3 cut(s) | 260, 504, 712 |
| MflI | RGATCY | 2 cut(s) | 632, 800 |
| MhlI | GDGCHC | 2 cut(s) | 286, 1021 |
| MluCI | AATT | 7 cut(s) | 161, 232, 287, 440, 616, 868, 998 |
| MmeI | TCCRAC | 1 cut(s) | 698 |
| Mph1103I | ATGCAT | 1 cut(s) | 685 |
| MseI | TTAA | 3 cut(s) | 39, 195, 533 |
| MslI | CAYNNNNRTG | 2 cut(s) | 647, 938 |
| MspI | CCGG | 2 cut(s) | 621, 883 |
| MspR9I | CCNGG | 2 cut(s) | 883, 884 |
| Mva1269I | GAATGC | 1 cut(s) | 1043 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 583 |
| NciI | CCSGG | 2 cut(s) | 883, 884 |
| NdeI | CATATG | 2 cut(s) | 707, 858 |
| NdeII | GATC | 3 cut(s) | 498, 632, 800 |
| NheI | GCTAGC | 1 cut(s) | 19 |
| NlaIII | CATG | 5 cut(s) | 59, 386, 585, 652, 759 |
| NlaIV | GGNNCC | 1 cut(s) | 634 |
| NmuCI | GTSAC | 4 cut(s) | 638, 736, 790, 830 |
| NsiI | ATGCAT | 1 cut(s) | 685 |
| NspI | RCATGY | 2 cut(s) | 386, 759 |
| PaeI | GCATGC | 1 cut(s) | 759 |
| PctI | GAATGC | 1 cut(s) | 1043 |
| PfeI | GAWTC | 2 cut(s) | 187, 845 |
| PkrI | GCNGC | 4 cut(s) | 347, 693, 987, 1042 |
| PsiI | TTATAA | 1 cut(s) | 146 |
| PspN4I | GGNNCC | 1 cut(s) | 634 |
| PspPI | GGNCC | 2 cut(s) | 343, 880 |
| PsuI | RGATCY | 2 cut(s) | 632, 800 |
| RsaI | GTAC | 4 cut(s) | 216, 556, 663, 723 |
| RsaNI | GTAC | 4 cut(s) | 215, 555, 662, 722 |
| RseI | CAYNNNNRTG | 2 cut(s) | 647, 938 |
| SaqAI | TTAA | 3 cut(s) | 39, 195, 533 |
| SatI | GCNGC | 4 cut(s) | 346, 692, 986, 1041 |
| Sau3AI | GATC | 3 cut(s) | 498, 632, 800 |
| Sau96I | GGNCC | 2 cut(s) | 343, 880 |
| ScrFI | CCNGG | 2 cut(s) | 883, 884 |
| SduI | GDGCHC | 2 cut(s) | 286, 1021 |
| SfaNI | GCATC | 3 cut(s) | 380, 595, 670 |
| SmaI | CCCGGG | 1 cut(s) | 884 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 647, 938 |
| SmlI | CTYRAG | 2 cut(s) | 376, 972 |
| SmoI | CTYRAG | 2 cut(s) | 376, 972 |
| SpeI | ACTAGT | 1 cut(s) | 740 |
| SphI | GCATGC | 1 cut(s) | 759 |
| Sse9I | AATT | 7 cut(s) | 161, 232, 287, 440, 616, 868, 998 |
| SsiI | CCGC | 1 cut(s) | 346 |
| SspMI | CTAG | 6 cut(s) | 20, 68, 335, 407, 741, 1048 |
| StyD4I | CCNGG | 2 cut(s) | 881, 882 |
| StyI | CCWWGG | 2 cut(s) | 334, 361 |
| TasI | AATT | 7 cut(s) | 161, 232, 287, 440, 616, 868, 998 |
| TatI | WGTACW | 1 cut(s) | 661 |
| TauI | GCSGC | 1 cut(s) | 348 |
| TfiI | GAWTC | 2 cut(s) | 187, 845 |
| Tru1I | TTAA | 3 cut(s) | 39, 195, 533 |
| Tru9I | TTAA | 3 cut(s) | 39, 195, 533 |
| TseFI | GTSAC | 4 cut(s) | 638, 736, 790, 830 |
| TseI | GCWGC | 3 cut(s) | 691, 985, 1040 |
| Tsp45I | GTSAC | 4 cut(s) | 638, 736, 790, 830 |
| TspDTI | ATGAA | 4 cut(s) | 245, 260, 455, 665 |
| TspMI | CCCGGG | 1 cut(s) | 882 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 338 |
| XapI | RAATTY | 3 cut(s) | 440, 616, 998 |
| XceI | RCATGY | 2 cut(s) | 386, 759 |
| XmaI | CCCGGG | 1 cut(s) | 882 |
| XmaJI | CCTAGG | 1 cut(s) | 334 |
| XspI | CTAG | 6 cut(s) | 20, 68, 335, 407, 741, 1048 |
| Zsp2I | ATGCAT | 1 cut(s) | 685 |