Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1258 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 935, 1207 |
| AccI | GTMKAC | 2 cut(s) | 227, 304 |
| AccII | CGCG | 1 cut(s) | 142 |
| AccIII | TCCGGA | 1 cut(s) | 285 |
| AciI | CCGC | 6 cut(s) | 23, 140, 431, 627, 667, 1196 |
| AclWI | GGATC | 4 cut(s) | 277, 812, 1124, 1159 |
| AcsI | RAATTY | 2 cut(s) | 291, 952 |
| AcuI | CTGAAG | 1 cut(s) | 914 |
| AdeI | CACNNNGTG | 1 cut(s) | 935 |
| AfaI | GTAC | 2 cut(s) | 100, 468 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 39, 167, 481, 935, 1207, 1288, 1397 |
| AflIII | ACRYGT | 3 cut(s) | 150, 222, 469 |
| AgsI | TTSAA | 2 cut(s) | 73, 423 |
| AjiI | CACGTC | 1 cut(s) | 225 |
| AleI | CACNNNNGTG | 1 cut(s) | 879 |
| AluBI | AGCT | 5 cut(s) | 568, 632, 1243, 1253, 1348 |
| AluI | AGCT | 5 cut(s) | 568, 632, 1243, 1253, 1348 |
| Alw26I | GTCTC | 4 cut(s) | 411, 878, 934, 1041 |
| AlwI | GGATC | 4 cut(s) | 277, 812, 1124, 1159 |
| Aor13HI | TCCGGA | 1 cut(s) | 285 |
| AoxI | GGCC | 4 cut(s) | 349, 669, 768, 1197 |
| ApaI | GGGCCC | 1 cut(s) | 772 |
| ApeKI | GCWGC | 3 cut(s) | 565, 632, 664 |
| ApoI | RAATTY | 2 cut(s) | 291, 952 |
| AspLEI | GCGC | 1 cut(s) | 144 |
| AspS9I | GGNCC | 4 cut(s) | 669, 768, 769, 1198 |
| AsuC2I | CCSGG | 1 cut(s) | 218 |
| AsuHPI | GGTGA | 2 cut(s) | 215, 844 |
| AsuII | TTCGAA | 1 cut(s) | 437 |
| AxyI | CCTNAGG | 1 cut(s) | 480 |
| BaeGI | GKGCMC | 3 cut(s) | 575, 772, 1078 |
| BanI | GGYRCC | 1 cut(s) | 1258 |
| BanII | GRGCYC | 2 cut(s) | 314, 772 |
| BauI | CACGAG | 2 cut(s) | 408, 1317 |
| BbsI | GAAGAC | 2 cut(s) | 408, 1101 |
| BbvCI | CCTCAGC | 1 cut(s) | 1254 |
| BbvI | GCAGC | 3 cut(s) | 577, 619, 651 |
| BccI | CCATC | 8 cut(s) | 190, 229, 712, 830, 953, 971, 975, 1092 |
| BceAI | ACGGC | 1 cut(s) | 364 |
| BcnI | CCSGG | 1 cut(s) | 218 |
| BcoDI | GTCTC | 4 cut(s) | 411, 878, 934, 1041 |
| BfaI | CTAG | 2 cut(s) | 108, 1221 |
| BglII | AGATCT | 1 cut(s) | 241 |
| BisI | GCNGC | 5 cut(s) | 140, 566, 633, 665, 1197 |
| BlpI | GCTNAGC | 1 cut(s) | 1249 |
| BlsI | GCNGC | 5 cut(s) | 141, 567, 634, 666, 1198 |
| Bme1390I | CCNGG | 1 cut(s) | 218 |
| BmgBI | CACGTC | 1 cut(s) | 225 |
| BmgT120I | GGNCC | 4 cut(s) | 669, 768, 769, 1198 |
| BmiI | GGNNCC | 6 cut(s) | 47, 89, 311, 685, 770, 1260 |
| BmrFI | CCNGG | 1 cut(s) | 218 |
| BmsI | GCATC | 1 cut(s) | 616 |
| BpiI | GAAGAC | 2 cut(s) | 408, 1101 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1337, 1369 |
| BpmI | CTGGAG | 1 cut(s) | 1061 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1254 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1249 |
| Bpu14I | TTCGAA | 1 cut(s) | 437 |
| BpuEI | CTTGAG | 1 cut(s) | 929 |
| BpuMI | CCSGG | 1 cut(s) | 218 |
| BsaAI | YACGTR | 1 cut(s) | 470 |
| BsaJI | CCNNGG | 1 cut(s) | 131 |
| BsaWI | WCCGGW | 1 cut(s) | 285 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 242, 272, 981, 987, 1011, 1017 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 39, 167, 481, 935, 1207, 1288, 1397 |
| Bse1I | ACTGG | 1 cut(s) | 403 |
| Bse21I | CCTNAGG | 1 cut(s) | 480 |
| BseAI | TCCGGA | 1 cut(s) | 285 |
| BseDI | CCNNGG | 1 cut(s) | 131 |
| BseGI | GGATG | 3 cut(s) | 240, 727, 986 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 39, 167, 481, 935, 1207, 1288, 1397 |
| BseMII | CTCAG | 3 cut(s) | 180, 1245, 1319 |
| BseNI | ACTGG | 1 cut(s) | 403 |
| BseRI | GAGGAG | 2 cut(s) | 58, 379 |
| BseSI | GKGCMC | 3 cut(s) | 575, 772, 1078 |
| BseXI | GCAGC | 3 cut(s) | 577, 619, 651 |
| BseYI | CCCAGC | 1 cut(s) | 383 |
| Bsh1236I | CGCG | 1 cut(s) | 142 |
| BshFI | GGCC | 4 cut(s) | 351, 671, 770, 1199 |
| BshNI | GGYRCC | 1 cut(s) | 1258 |
| BsiSI | CCGG | 2 cut(s) | 218, 286 |
| BslFI | GGGAC | 1 cut(s) | 1321 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 39, 167, 481, 935, 1207, 1288, 1397 |
| BsmAI | GTCTC | 4 cut(s) | 411, 878, 934, 1041 |
| BsmBI | CGTCTC | 1 cut(s) | 878 |
| BsmFI | GGGAC | 1 cut(s) | 1321 |
| BsnI | GGCC | 4 cut(s) | 351, 671, 770, 1199 |
| Bsp119I | TTCGAA | 1 cut(s) | 437 |
| Bsp120I | GGGCCC | 1 cut(s) | 768 |
| Bsp1286I | GDGCHC | 4 cut(s) | 314, 575, 772, 1078 |
| Bsp13I | TCCGGA | 1 cut(s) | 285 |
| Bsp143I | GATC | 6 cut(s) | 64, 241, 282, 817, 1116, 1164 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1249 |
| Bsp19I | CCATGG | 1 cut(s) | 131 |
| BspACI | CCGC | 6 cut(s) | 23, 140, 431, 627, 667, 1196 |
| BspANI | GGCC | 4 cut(s) | 351, 671, 770, 1199 |
| BspCNI | CTCAG | 3 cut(s) | 179, 1246, 1318 |
| BspEI | TCCGGA | 1 cut(s) | 285 |
| BspFNI | CGCG | 1 cut(s) | 142 |
| BspHI | TCATGA | 1 cut(s) | 507 |
| BspLI | GGNNCC | 6 cut(s) | 47, 89, 311, 685, 770, 1260 |
| BspPI | GGATC | 4 cut(s) | 277, 812, 1124, 1159 |
| BspQI | GCTCTTC | 1 cut(s) | 555 |
| BspT104I | TTCGAA | 1 cut(s) | 437 |
| BspT107I | GGYRCC | 1 cut(s) | 1258 |
| BsrI | ACTGG | 1 cut(s) | 403 |
| BssECI | CCNNGG | 1 cut(s) | 131 |
| BssMI | GATC | 6 cut(s) | 64, 241, 282, 817, 1116, 1164 |
| BssNAI | GTATAC | 1 cut(s) | 305 |
| BssSI | CACGAG | 2 cut(s) | 408, 1317 |
| BssT1I | CCWWGG | 1 cut(s) | 131 |
| Bst1107I | GTATAC | 1 cut(s) | 305 |
| Bst2BI | CACGAG | 2 cut(s) | 408, 1317 |
| Bst4CI | ACNGT | 4 cut(s) | 16, 765, 832, 1058 |
| Bst6I | CTCTTC | 4 cut(s) | 555, 693, 890, 1398 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1193 |
| BstBAI | YACGTR | 1 cut(s) | 470 |
| BstBI | TTCGAA | 1 cut(s) | 437 |
| BstC8I | GCNNGC | 2 cut(s) | 637, 669 |
| BstDEI | CTNAG | 6 cut(s) | 166, 480, 539, 1249, 1254, 1305 |
| BstDSI | CCRYGG | 1 cut(s) | 131 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 165, 479, 1286 |
| BstF5I | GGATG | 3 cut(s) | 240, 727, 986 |
| BstFNI | CGCG | 1 cut(s) | 142 |
| BstHHI | GCGC | 1 cut(s) | 144 |
| BstKTI | GATC | 6 cut(s) | 67, 244, 285, 820, 1119, 1167 |
| BstMAI | GTCTC | 4 cut(s) | 411, 878, 934, 1041 |
| BstMBI | GATC | 6 cut(s) | 64, 241, 282, 817, 1116, 1164 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 1021, 1193, 1217 |
| BstNSI | RCATGY | 2 cut(s) | 639, 643 |
| BstSCI | CCNGG | 1 cut(s) | 216 |
| BstSLI | GKGCMC | 3 cut(s) | 575, 772, 1078 |
| BstUI | CGCG | 1 cut(s) | 142 |
| BstV1I | GCAGC | 3 cut(s) | 577, 619, 651 |
| BstV2I | GAAGAC | 2 cut(s) | 408, 1101 |
| BstX2I | RGATCY | 2 cut(s) | 241, 1164 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 410, 694 |
| BstYI | RGATCY | 2 cut(s) | 241, 1164 |
| BstZ17I | GTATAC | 1 cut(s) | 305 |
| Bsu36I | CCTNAGG | 1 cut(s) | 480 |
| BsuRI | GGCC | 4 cut(s) | 351, 671, 770, 1199 |
| BtgI | CCRYGG | 1 cut(s) | 131 |
| BtrI | CACGTC | 1 cut(s) | 225 |
| BtsCI | GGATG | 3 cut(s) | 240, 727, 986 |
| BtsIMutI | CAGTG | 2 cut(s) | 366, 1078 |
| Cac8I | GCNNGC | 2 cut(s) | 637, 669 |
| CciI | TCATGA | 1 cut(s) | 507 |
| CfoI | GCGC | 1 cut(s) | 144 |
| Cfr13I | GGNCC | 4 cut(s) | 669, 768, 769, 1198 |
| Csp6I | GTAC | 2 cut(s) | 99, 467 |
| CviQI | GTAC | 2 cut(s) | 99, 467 |
| DdeI | CTNAG | 6 cut(s) | 166, 480, 539, 1249, 1254, 1305 |
| DpnI | GATC | 6 cut(s) | 66, 243, 284, 819, 1118, 1166 |
| DpnII | GATC | 6 cut(s) | 64, 241, 282, 817, 1116, 1164 |
| DraI | TTTAAA | 2 cut(s) | 157, 616 |
| DraIII | CACNNNGTG | 1 cut(s) | 935 |
| Eam1104I | CTCTTC | 4 cut(s) | 555, 693, 890, 1398 |
| EarI | CTCTTC | 4 cut(s) | 555, 693, 890, 1398 |
| Eco130I | CCWWGG | 1 cut(s) | 131 |
| Eco24I | GRGCYC | 2 cut(s) | 314, 772 |
| Eco57I | CTGAAG | 1 cut(s) | 914 |
| Eco81I | CCTNAGG | 1 cut(s) | 480 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 165, 479, 1286 |
| EcoO109I | RGGNCCY | 1 cut(s) | 769 |
| EcoT14I | CCWWGG | 1 cut(s) | 131 |
| EcoT22I | ATGCAT | 2 cut(s) | 557, 641 |
| EcoT38I | GRGCYC | 2 cut(s) | 314, 772 |
| ErhI | CCWWGG | 1 cut(s) | 131 |
| Esp3I | CGTCTC | 1 cut(s) | 878 |
| FaqI | GGGAC | 1 cut(s) | 1321 |
| FauI | CCCGC | 3 cut(s) | 16, 424, 660 |
| FblI | GTMKAC | 2 cut(s) | 227, 304 |
| Fnu4HI | GCNGC | 5 cut(s) | 140, 566, 633, 665, 1197 |
| FokI | GGATG | 3 cut(s) | 247, 734, 993 |
| FriOI | GRGCYC | 2 cut(s) | 314, 772 |
| Fsp4HI | GCNGC | 5 cut(s) | 140, 566, 633, 665, 1197 |
| FspBI | CTAG | 2 cut(s) | 108, 1221 |
| GlaI | GCGC | 1 cut(s) | 143 |
| GluI | GCNGC | 5 cut(s) | 140, 566, 633, 665, 1197 |
| GsaI | CCCAGC | 1 cut(s) | 387 |
| GsuI | CTGGAG | 1 cut(s) | 1061 |
| HaeIII | GGCC | 4 cut(s) | 351, 671, 770, 1199 |
| HapII | CCGG | 2 cut(s) | 218, 286 |
| HhaI | GCGC | 1 cut(s) | 144 |
| Hin6I | GCGC | 1 cut(s) | 142 |
| HinP1I | GCGC | 1 cut(s) | 142 |
| HincII | GTYRAC | 1 cut(s) | 228 |
| HindII | GTYRAC | 1 cut(s) | 228 |
| HinfI | GANTC | 3 cut(s) | 29, 504, 942 |
| HpaII | CCGG | 2 cut(s) | 218, 286 |
| HphI | GGTGA | 2 cut(s) | 215, 844 |
| Hpy166II | GTNNAC | 3 cut(s) | 228, 305, 394 |
| Hpy188I | TCNGA | 6 cut(s) | 913, 1007, 1116, 1169, 1308, 1345 |
| Hpy188III | TCNNGA | 7 cut(s) | 91, 286, 460, 508, 1040, 1181, 1226 |
| Hpy8I | GTNNAC | 3 cut(s) | 228, 305, 394 |
| Hpy99I | CGWCG | 1 cut(s) | 229 |
| HpyAV | CCTTC | 4 cut(s) | 173, 457, 894, 898 |
| HpyCH4III | ACNGT | 4 cut(s) | 16, 765, 832, 1058 |
| HpyCH4IV | ACGT | 3 cut(s) | 152, 224, 469 |
| HpyCH4V | TGCA | 4 cut(s) | 555, 607, 635, 639 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 1021, 1193, 1217 |
| HpyF3I | CTNAG | 6 cut(s) | 166, 480, 539, 1249, 1254, 1305 |
| HpySE526I | ACGT | 3 cut(s) | 152, 224, 469 |
| HspAI | GCGC | 1 cut(s) | 142 |
| Kpn2I | TCCGGA | 1 cut(s) | 285 |
| Kzo9I | GATC | 6 cut(s) | 64, 241, 282, 817, 1116, 1164 |
| LguI | GCTCTTC | 1 cut(s) | 555 |
| LmnI | GCTCC | 7 cut(s) | 45, 309, 629, 683, 989, 1021, 1345 |
| Lsp1109I | GCAGC | 3 cut(s) | 577, 619, 651 |
| LweI | GCATC | 1 cut(s) | 616 |
| MaeI | CTAG | 2 cut(s) | 108, 1221 |
| MaeII | ACGT | 3 cut(s) | 152, 224, 469 |
| MaeIII | GTNAC | 2 cut(s) | 832, 846 |
| MalI | GATC | 6 cut(s) | 66, 243, 284, 819, 1118, 1166 |
| MboI | GATC | 6 cut(s) | 64, 241, 282, 817, 1116, 1164 |
| MflI | RGATCY | 2 cut(s) | 241, 1164 |
| MhlI | GDGCHC | 4 cut(s) | 314, 575, 772, 1078 |
| MluCI | AATT | 5 cut(s) | 254, 291, 952, 999, 1357 |
| MlyI | GAGTC | 2 cut(s) | 498, 936 |
| MmeI | TCCRAC | 5 cut(s) | 165, 228, 1010, 1094, 1192 |
| Mph1103I | ATGCAT | 2 cut(s) | 557, 641 |
| MroI | TCCGGA | 1 cut(s) | 285 |
| MseI | TTAA | 7 cut(s) | 18, 156, 486, 615, 950, 1080, 1362 |
| MslI | CAYNNNNRTG | 1 cut(s) | 879 |
| MspA1I | CMGCKG | 2 cut(s) | 431, 568 |
| MspI | CCGG | 2 cut(s) | 218, 286 |
| MspR9I | CCNGG | 1 cut(s) | 218 |
| MssI | GTTTAAAC | 1 cut(s) | 157 |
| MvnI | CGCG | 1 cut(s) | 142 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 1021, 1193, 1217 |
| NciI | CCSGG | 1 cut(s) | 218 |
| NcoI | CCATGG | 1 cut(s) | 131 |
| NdeII | GATC | 6 cut(s) | 64, 241, 282, 817, 1116, 1164 |
| NlaIV | GGNNCC | 6 cut(s) | 47, 89, 311, 685, 770, 1260 |
| NmuCI | GTSAC | 1 cut(s) | 832 |
| NsiI | ATGCAT | 2 cut(s) | 557, 641 |
| NspI | RCATGY | 2 cut(s) | 639, 643 |
| NspV | TTCGAA | 1 cut(s) | 437 |
| OliI | CACNNNNGTG | 1 cut(s) | 879 |
| PaeI | GCATGC | 1 cut(s) | 639 |
| PagI | TCATGA | 1 cut(s) | 507 |
| PciSI | GCTCTTC | 1 cut(s) | 555 |
| PfeI | GAWTC | 1 cut(s) | 29 |
| PflFI | GACNNNGTC | 1 cut(s) | 838 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 935, 1207 |
| PkrI | GCNGC | 5 cut(s) | 141, 567, 634, 666, 1198 |
| PleI | GAGTC | 2 cut(s) | 498, 936 |
| PmeI | GTTTAAAC | 1 cut(s) | 157 |
| PpsI | GAGTC | 2 cut(s) | 498, 936 |
| Ppu21I | YACGTR | 1 cut(s) | 470 |
| PspFI | CCCAGC | 1 cut(s) | 383 |
| PspN4I | GGNNCC | 6 cut(s) | 47, 89, 311, 685, 770, 1260 |
| PspOMI | GGGCCC | 1 cut(s) | 768 |
| PspPI | GGNCC | 4 cut(s) | 669, 768, 769, 1198 |
| PsuI | RGATCY | 2 cut(s) | 241, 1164 |
| PsyI | GACNNNGTC | 1 cut(s) | 838 |
| PvuII | CAGCTG | 1 cut(s) | 568 |
| RsaI | GTAC | 2 cut(s) | 100, 468 |
| RsaNI | GTAC | 2 cut(s) | 99, 467 |
| RseI | CAYNNNNRTG | 1 cut(s) | 879 |
| SalI | GTCGAC | 1 cut(s) | 226 |
| SapI | GCTCTTC | 1 cut(s) | 555 |
| SaqAI | TTAA | 7 cut(s) | 18, 156, 486, 615, 950, 1080, 1362 |
| SatI | GCNGC | 5 cut(s) | 140, 566, 633, 665, 1197 |
| Sau3AI | GATC | 6 cut(s) | 64, 241, 282, 817, 1116, 1164 |
| Sau96I | GGNCC | 4 cut(s) | 669, 768, 769, 1198 |
| SchI | GAGTC | 2 cut(s) | 498, 936 |
| ScrFI | CCNGG | 1 cut(s) | 218 |
| SduI | GDGCHC | 4 cut(s) | 314, 575, 772, 1078 |
| SfaNI | GCATC | 1 cut(s) | 616 |
| SfuI | TTCGAA | 1 cut(s) | 437 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 879 |
| SmlI | CTYRAG | 1 cut(s) | 944 |
| SmoI | CTYRAG | 1 cut(s) | 944 |
| SphI | GCATGC | 1 cut(s) | 639 |
| Sse9I | AATT | 5 cut(s) | 254, 291, 952, 999, 1357 |
| SsiI | CCGC | 6 cut(s) | 23, 140, 431, 627, 667, 1196 |
| SspI | AATATT | 1 cut(s) | 517 |
| SspMI | CTAG | 2 cut(s) | 108, 1221 |
| StyD4I | CCNGG | 1 cut(s) | 216 |
| StyI | CCWWGG | 1 cut(s) | 131 |
| TaaI | ACNGT | 4 cut(s) | 16, 765, 832, 1058 |
| TaiI | ACGT | 3 cut(s) | 155, 227, 472 |
| TaqI | TCGA | 5 cut(s) | 227, 437, 583, 1047, 1180 |
| TasI | AATT | 5 cut(s) | 254, 291, 952, 999, 1357 |
| TauI | GCSGC | 2 cut(s) | 142, 1199 |
| TfiI | GAWTC | 1 cut(s) | 29 |
| Tru1I | TTAA | 7 cut(s) | 18, 156, 486, 615, 950, 1080, 1362 |
| Tru9I | TTAA | 7 cut(s) | 18, 156, 486, 615, 950, 1080, 1362 |
| TscAI | CASTG | 2 cut(s) | 366, 1078 |
| TseFI | GTSAC | 1 cut(s) | 832 |
| TseI | GCWGC | 3 cut(s) | 565, 632, 664 |
| Tsp45I | GTSAC | 1 cut(s) | 832 |
| TspDTI | ATGAA | 1 cut(s) | 68 |
| TspGWI | ACGGA | 1 cut(s) | 322 |
| TspRI | CASTG | 2 cut(s) | 366, 1078 |
| Tth111I | GACNNNGTC | 1 cut(s) | 838 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 935, 1207 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 165, 479, 1286 |
| XapI | RAATTY | 2 cut(s) | 291, 952 |
| XceI | RCATGY | 2 cut(s) | 639, 643 |
| XmiI | GTMKAC | 2 cut(s) | 227, 304 |
| XspI | CTAG | 2 cut(s) | 108, 1221 |
| Zsp2I | ATGCAT | 2 cut(s) | 557, 641 |