Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1321 |
| Acc16I | TGCGCA | 1 cut(s) | 3209 |
| Acc36I | ACCTGC | 3 cut(s) | 464, 1321, 1891 |
| Acc65I | GGTACC | 2 cut(s) | 855, 1959 |
| AccB1I | GGYRCC | 6 cut(s) | 855, 1118, 1847, 1959, 2365, 3371 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 521 |
| AccBSI | CCGCTC | 1 cut(s) | 60 |
| AccII | CGCG | 2 cut(s) | 622, 1789 |
| AciI | CCGC | 4 cut(s) | 58, 957, 1789, 2436 |
| AclWI | GGATC | 3 cut(s) | 1442, 1455, 2971 |
| AcoI | YGGCCR | 1 cut(s) | 12 |
| AcsI | RAATTY | 6 cut(s) | 920, 2475, 2529, 2784, 3244, 3364 |
| AcuI | CTGAAG | 5 cut(s) | 840, 1053, 1454, 1728, 2832 |
| AcvI | CACGTG | 1 cut(s) | 398 |
| AcyI | GRCGYC | 1 cut(s) | 27 |
| AfaI | GTAC | 6 cut(s) | 847, 857, 1191, 1961, 2517, 2822 |
| AfeI | AGCGCT | 1 cut(s) | 2242 |
| AflIII | ACRYGT | 1 cut(s) | 2561 |
| AjnI | CCWGG | 4 cut(s) | 201, 1542, 1852, 2720 |
| Alw21I | GWGCWC | 1 cut(s) | 3045 |
| Alw26I | GTCTC | 3 cut(s) | 1481, 2919, 3287 |
| AlwI | GGATC | 3 cut(s) | 1442, 1455, 2971 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1706 |
| Ama87I | CYCGRG | 1 cut(s) | 3265 |
| Aor51HI | AGCGCT | 1 cut(s) | 2242 |
| AoxI | GGCC | 7 cut(s) | 12, 934, 1180, 1347, 1686, 1762, 2815 |
| ApeKI | GCWGC | 6 cut(s) | 78, 1272, 1679, 2238, 2333, 2336 |
| ApoI | RAATTY | 6 cut(s) | 920, 2475, 2529, 2784, 3244, 3364 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3175, 3207 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 197, 600, 893, 2784 |
| Asp718I | GGTACC | 2 cut(s) | 855, 1959 |
| AspA2I | CCTAGG | 1 cut(s) | 1096 |
| AspLEI | GCGC | 5 cut(s) | 622, 1514, 1789, 2243, 3210 |
| AspS9I | GGNCC | 3 cut(s) | 608, 1763, 2288 |
| AsuC2I | CCSGG | 3 cut(s) | 663, 3266, 3267 |
| AvaI | CYCGRG | 1 cut(s) | 3265 |
| AvaII | GGWCC | 2 cut(s) | 608, 2288 |
| AvrII | CCTAGG | 1 cut(s) | 1096 |
| AxyI | CCTNAGG | 1 cut(s) | 439 |
| BalI | TGGCCA | 1 cut(s) | 14 |
| BamHI | GGATCC | 1 cut(s) | 1447 |
| BanI | GGYRCC | 6 cut(s) | 855, 1118, 1847, 1959, 2365, 3371 |
| BanII | GRGCYC | 1 cut(s) | 3045 |
| BbrPI | CACGTG | 1 cut(s) | 398 |
| BbsI | GAAGAC | 1 cut(s) | 1059 |
| Bbv12I | GWGCWC | 1 cut(s) | 3045 |
| BbvCI | CCTCAGC | 1 cut(s) | 1683 |
| BbvI | GCAGC | 6 cut(s) | 90, 1284, 1666, 2250, 2320, 2323 |
| BceAI | ACGGC | 4 cut(s) | 21, 40, 2752, 2784 |
| BciT130I | CCWGG | 4 cut(s) | 203, 1544, 1854, 2722 |
| BciVI | GTATCC | 1 cut(s) | 521 |
| BclI | TGATCA | 1 cut(s) | 1558 |
| BcnI | CCSGG | 3 cut(s) | 663, 3266, 3267 |
| BcoDI | GTCTC | 3 cut(s) | 1481, 2919, 3287 |
| BfaI | CTAG | 8 cut(s) | 311, 753, 1097, 1590, 1697, 1731, 2069, 2873 |
| BfmI | CTRYAG | 2 cut(s) | 412, 729 |
| BfoI | RGCGCY | 1 cut(s) | 2244 |
| BfuAI | ACCTGC | 3 cut(s) | 464, 1321, 1891 |
| BfuI | GTATCC | 1 cut(s) | 521 |
| BglII | AGATCT | 2 cut(s) | 369, 1204 |
| BisI | GCNGC | 6 cut(s) | 79, 1273, 1680, 2239, 2334, 2337 |
| BlnI | CCTAGG | 1 cut(s) | 1096 |
| BlpI | GCTNAGC | 1 cut(s) | 837 |
| BlsI | GCNGC | 6 cut(s) | 80, 1274, 1681, 2240, 2335, 2338 |
| Bme1390I | CCNGG | 7 cut(s) | 203, 663, 1544, 1854, 2722, 3266, 3267 |
| Bme18I | GGWCC | 2 cut(s) | 608, 2288 |
| BmeT110I | CYCGRG | 1 cut(s) | 3265 |
| BmgT120I | GGNCC | 3 cut(s) | 608, 1763, 2288 |
| BmrFI | CCNGG | 7 cut(s) | 203, 663, 1544, 1854, 2722, 3266, 3267 |
| BmrI | ACTGGG | 2 cut(s) | 524, 1476 |
| BmsI | GCATC | 5 cut(s) | 90, 237, 439, 1936, 2584 |
| BmuI | ACTGGG | 2 cut(s) | 524, 1476 |
| BpiI | GAAGAC | 1 cut(s) | 1059 |
| BpmI | CTGGAG | 2 cut(s) | 1815, 2514 |
| Bpu10I | CCTNAGC | 4 cut(s) | 1177, 1416, 1683, 2553 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 837 |
| BpuMI | CCSGG | 3 cut(s) | 663, 3266, 3267 |
| BsaAI | YACGTR | 1 cut(s) | 398 |
| BsaBI | GATNNNNATC | 2 cut(s) | 702, 2042 |
| BsaHI | GRCGYC | 1 cut(s) | 27 |
| BsaI | GGTCTC | 1 cut(s) | 2919 |
| BsaJI | CCNNGG | 9 cut(s) | 828, 1096, 1542, 1852, 1853, 2137, 3265, 3266, 3387 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 39, 69, 1735, 1765 |
| Bse1I | ACTGG | 5 cut(s) | 530, 1471, 2148, 2222, 2290 |
| Bse21I | CCTNAGG | 1 cut(s) | 439 |
| Bse3DI | GCAATG | 2 cut(s) | 1275, 2688 |
| Bse8I | GATNNNNATC | 2 cut(s) | 702, 2042 |
| BseBI | CCWGG | 4 cut(s) | 203, 1544, 1854, 2722 |
| BseDI | CCNNGG | 9 cut(s) | 828, 1096, 1542, 1852, 1853, 2137, 3265, 3266, 3387 |
| BseJI | GATNNNNATC | 2 cut(s) | 702, 2042 |
| BseMI | GCAATG | 2 cut(s) | 1275, 2688 |
| BseMII | CTCAG | 8 cut(s) | 912, 1122, 1191, 1284, 1354, 1407, 1674, 3349 |
| BseNI | ACTGG | 5 cut(s) | 530, 1471, 2148, 2222, 2290 |
| BseRI | GAGGAG | 3 cut(s) | 57, 1212, 1667 |
| BseXI | GCAGC | 6 cut(s) | 90, 1284, 1666, 2250, 2320, 2323 |
| BseYI | CCCAGC | 2 cut(s) | 1083, 1420 |
| BsgI | GTGCAG | 3 cut(s) | 277, 1382, 2355 |
| Bsh1236I | CGCG | 2 cut(s) | 622, 1789 |
| BshFI | GGCC | 7 cut(s) | 14, 936, 1182, 1349, 1688, 1764, 2817 |
| BshNI | GGYRCC | 6 cut(s) | 855, 1118, 1847, 1959, 2365, 3371 |
| BsiHKAI | GWGCWC | 1 cut(s) | 3045 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3265 |
| BsiSI | CCGG | 2 cut(s) | 663, 3266 |
| BslFI | GGGAC | 2 cut(s) | 2971, 3248 |
| BsmAI | GTCTC | 3 cut(s) | 1481, 2919, 3287 |
| BsmFI | GGGAC | 2 cut(s) | 2971, 3248 |
| BsmI | GAATGC | 2 cut(s) | 1514, 3237 |
| BsnI | GGCC | 7 cut(s) | 14, 936, 1182, 1349, 1688, 1764, 2817 |
| Bso31I | GGTCTC | 1 cut(s) | 2919 |
| BsoBI | CYCGRG | 1 cut(s) | 3265 |
| Bsp1286I | GDGCHC | 1 cut(s) | 3045 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 837 |
| BspACI | CCGC | 4 cut(s) | 58, 957, 1789, 2436 |
| BspANI | GGCC | 7 cut(s) | 14, 936, 1182, 1349, 1688, 1764, 2817 |
| BspCNI | CTCAG | 8 cut(s) | 911, 1123, 1190, 1285, 1353, 1408, 1675, 3348 |
| BspFNI | CGCG | 2 cut(s) | 622, 1789 |
| BspMAI | CTGCAG | 1 cut(s) | 416 |
| BspMI | ACCTGC | 3 cut(s) | 464, 1321, 1891 |
| BspPI | GGATC | 3 cut(s) | 1442, 1455, 2971 |
| BspQI | GCTCTTC | 1 cut(s) | 3266 |
| BspT107I | GGYRCC | 6 cut(s) | 855, 1118, 1847, 1959, 2365, 3371 |
| BspTNI | GGTCTC | 1 cut(s) | 2919 |
| BsrBI | CCGCTC | 1 cut(s) | 60 |
| BsrDI | GCAATG | 2 cut(s) | 1275, 2688 |
| BsrI | ACTGG | 5 cut(s) | 530, 1471, 2148, 2222, 2290 |
| BssECI | CCNNGG | 9 cut(s) | 828, 1096, 1542, 1852, 1853, 2137, 3265, 3266, 3387 |
| BssNI | GRCGYC | 1 cut(s) | 27 |
| BssT1I | CCWWGG | 4 cut(s) | 828, 1096, 2137, 3387 |
| Bst2UI | CCWGG | 4 cut(s) | 203, 1544, 1854, 2722 |
| Bst6I | CTCTTC | 4 cut(s) | 1911, 2871, 3266, 3303 |
| BstACI | GRCGYC | 1 cut(s) | 27 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 1281, 2090, 2378 |
| BstBAI | YACGTR | 1 cut(s) | 398 |
| BstC8I | GCNNGC | 7 cut(s) | 12, 654, 1282, 1846, 2370, 2648, 3283 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3321 |
| BstFNI | CGCG | 2 cut(s) | 622, 1789 |
| BstH2I | RGCGCY | 1 cut(s) | 2244 |
| BstHHI | GCGC | 5 cut(s) | 622, 1514, 1789, 2243, 3210 |
| BstMAI | GTCTC | 3 cut(s) | 1481, 2919, 3287 |
| BstNI | CCWGG | 4 cut(s) | 203, 1544, 1854, 2722 |
| BstNSI | RCATGY | 4 cut(s) | 656, 1260, 1405, 2565 |
| BstSCI | CCNGG | 7 cut(s) | 201, 661, 1542, 1852, 2720, 3264, 3265 |
| BstSFI | CTRYAG | 2 cut(s) | 412, 729 |
| BstUI | CGCG | 2 cut(s) | 622, 1789 |
| BstV1I | GCAGC | 6 cut(s) | 90, 1284, 1666, 2250, 2320, 2323 |
| BstV2I | GAAGAC | 1 cut(s) | 1059 |
| BstX2I | RGATCY | 3 cut(s) | 369, 1204, 1447 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1839 |
| BstYI | RGATCY | 3 cut(s) | 369, 1204, 1447 |
| Bsu36I | CCTNAGG | 1 cut(s) | 439 |
| BsuI | GTATCC | 1 cut(s) | 521 |
| BsuRI | GGCC | 7 cut(s) | 14, 936, 1182, 1349, 1688, 1764, 2817 |
| BtsIMutI | CAGTG | 7 cut(s) | 588, 1059, 1704, 2253, 2973, 3086, 3258 |
| BveI | ACCTGC | 3 cut(s) | 464, 1321, 1891 |
| Cac8I | GCNNGC | 7 cut(s) | 12, 654, 1282, 1846, 2370, 2648, 3283 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1706 |
| CfoI | GCGC | 5 cut(s) | 622, 1514, 1789, 2243, 3210 |
| Cfr13I | GGNCC | 3 cut(s) | 608, 1763, 2288 |
| Cfr9I | CCCGGG | 1 cut(s) | 3265 |
| CseI | GACGC | 1 cut(s) | 16 |
| Csp6I | GTAC | 6 cut(s) | 846, 856, 1190, 1960, 2516, 2821 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1920, 1955, 2281, 2316 |
| CviQI | GTAC | 6 cut(s) | 846, 856, 1190, 1960, 2516, 2821 |
| EaeI | YGGCCR | 1 cut(s) | 12 |
| Eam1104I | CTCTTC | 4 cut(s) | 1911, 2871, 3266, 3303 |
| EarI | CTCTTC | 4 cut(s) | 1911, 2871, 3266, 3303 |
| Ecl136II | GAGCTC | 1 cut(s) | 3043 |
| Eco130I | CCWWGG | 4 cut(s) | 828, 1096, 2137, 3387 |
| Eco147I | AGGCCT | 4 cut(s) | 936, 1182, 1688, 2817 |
| Eco24I | GRGCYC | 1 cut(s) | 3045 |
| Eco31I | GGTCTC | 1 cut(s) | 2919 |
| Eco47I | GGWCC | 2 cut(s) | 608, 2288 |
| Eco47III | AGCGCT | 1 cut(s) | 2242 |
| Eco53kI | GAGCTC | 1 cut(s) | 3043 |
| Eco57I | CTGAAG | 5 cut(s) | 840, 1053, 1454, 1728, 2832 |
| Eco72I | CACGTG | 1 cut(s) | 398 |
| Eco81I | CCTNAGG | 1 cut(s) | 439 |
| Eco88I | CYCGRG | 1 cut(s) | 3265 |
| EcoICRI | GAGCTC | 1 cut(s) | 3043 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3321 |
| EcoRI | GAATTC | 1 cut(s) | 2784 |
| EcoRII | CCWGG | 4 cut(s) | 201, 1542, 1852, 2720 |
| EcoT14I | CCWWGG | 4 cut(s) | 828, 1096, 2137, 3387 |
| EcoT22I | ATGCAT | 1 cut(s) | 1407 |
| EcoT38I | GRGCYC | 1 cut(s) | 3045 |
| ErhI | CCWWGG | 4 cut(s) | 828, 1096, 2137, 3387 |
| FaqI | GGGAC | 2 cut(s) | 2971, 3248 |
| FauI | CCCGC | 2 cut(s) | 1782, 2443 |
| FauNDI | CATATG | 1 cut(s) | 2741 |
| FbaI | TGATCA | 1 cut(s) | 1558 |
| Fnu4HI | GCNGC | 6 cut(s) | 79, 1273, 1680, 2239, 2334, 2337 |
| FriOI | GRGCYC | 1 cut(s) | 3045 |
| Fsp4HI | GCNGC | 6 cut(s) | 79, 1273, 1680, 2239, 2334, 2337 |
| FspAI | RTGCGCAY | 1 cut(s) | 3209 |
| FspBI | CTAG | 8 cut(s) | 311, 753, 1097, 1590, 1697, 1731, 2069, 2873 |
| FspI | TGCGCA | 1 cut(s) | 3209 |
| GlaI | GCGC | 5 cut(s) | 621, 1513, 1788, 2242, 3209 |
| GluI | GCNGC | 6 cut(s) | 79, 1273, 1680, 2239, 2334, 2337 |
| GsaI | CCCAGC | 2 cut(s) | 1087, 1424 |
| GsuI | CTGGAG | 2 cut(s) | 1815, 2514 |
| HaeII | RGCGCY | 1 cut(s) | 2244 |
| HaeIII | GGCC | 7 cut(s) | 14, 936, 1182, 1349, 1688, 1764, 2817 |
| HapII | CCGG | 2 cut(s) | 663, 3266 |
| HgaI | GACGC | 1 cut(s) | 16 |
| HhaI | GCGC | 5 cut(s) | 622, 1514, 1789, 2243, 3210 |
| Hin1I | GRCGYC | 1 cut(s) | 27 |
| Hin6I | GCGC | 5 cut(s) | 620, 1512, 1787, 2241, 3208 |
| HinP1I | GCGC | 5 cut(s) | 620, 1512, 1787, 2241, 3208 |
| HincII | GTYRAC | 1 cut(s) | 325 |
| HindII | GTYRAC | 1 cut(s) | 325 |
| HpaII | CCGG | 2 cut(s) | 663, 3266 |
| Hpy166II | GTNNAC | 6 cut(s) | 325, 1299, 1553, 1926, 2971, 3356 |
| Hpy8I | GTNNAC | 6 cut(s) | 325, 1299, 1553, 1926, 2971, 3356 |
| Hpy99I | CGWCG | 1 cut(s) | 32 |
| HpyCH4IV | ACGT | 3 cut(s) | 397, 675, 878 |
| HpySE526I | ACGT | 3 cut(s) | 397, 675, 878 |
| Hsp92I | GRCGYC | 1 cut(s) | 27 |
| HspAI | GCGC | 5 cut(s) | 620, 1512, 1787, 2241, 3208 |
| KpnI | GGTACC | 2 cut(s) | 859, 1963 |
| Ksp22I | TGATCA | 1 cut(s) | 1558 |
| LguI | GCTCTTC | 1 cut(s) | 3266 |
| LmnI | GCTCC | 9 cut(s) | 65, 86, 846, 1756, 1792, 1834, 2456, 2495, 3318 |
| Lsp1109I | GCAGC | 6 cut(s) | 90, 1284, 1666, 2250, 2320, 2323 |
| LweI | GCATC | 5 cut(s) | 90, 237, 439, 1936, 2584 |
| MaeI | CTAG | 8 cut(s) | 311, 753, 1097, 1590, 1697, 1731, 2069, 2873 |
| MaeII | ACGT | 3 cut(s) | 397, 675, 878 |
| MaeIII | GTNAC | 4 cut(s) | 422, 1042, 1057, 1702 |
| MbiI | CCGCTC | 1 cut(s) | 60 |
| MflI | RGATCY | 3 cut(s) | 369, 1204, 1447 |
| MhlI | GDGCHC | 1 cut(s) | 3045 |
| MlsI | TGGCCA | 1 cut(s) | 14 |
| MluNI | TGGCCA | 1 cut(s) | 14 |
| MlyI | GAGTC | 5 cut(s) | 349, 1102, 2153, 2858, 3289 |
| MmeI | TCCRAC | 6 cut(s) | 635, 715, 1891, 2202, 3157, 3402 |
| Mox20I | TGGCCA | 1 cut(s) | 14 |
| Mph1103I | ATGCAT | 1 cut(s) | 1407 |
| MroXI | GAANNNNTTC | 4 cut(s) | 197, 600, 893, 2784 |
| MscI | TGGCCA | 1 cut(s) | 14 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2100 |
| Msp20I | TGGCCA | 1 cut(s) | 14 |
| MspA1I | CMGCKG | 3 cut(s) | 280, 1835, 2438 |
| MspI | CCGG | 2 cut(s) | 663, 3266 |
| MspR9I | CCNGG | 7 cut(s) | 203, 663, 1544, 1854, 2722, 3266, 3267 |
| Mva1269I | GAATGC | 2 cut(s) | 1514, 3237 |
| MvaI | CCWGG | 4 cut(s) | 203, 1544, 1854, 2722 |
| MvnI | CGCG | 2 cut(s) | 622, 1789 |
| NciI | CCSGG | 3 cut(s) | 663, 3266, 3267 |
| NdeI | CATATG | 1 cut(s) | 2741 |
| NmuCI | GTSAC | 3 cut(s) | 422, 1057, 1702 |
| NsbI | TGCGCA | 1 cut(s) | 3209 |
| NsiI | ATGCAT | 1 cut(s) | 1407 |
| NspI | RCATGY | 4 cut(s) | 656, 1260, 1405, 2565 |
| PaeI | GCATGC | 1 cut(s) | 656 |
| PaqCI | CACCTGC | 1 cut(s) | 1321 |
| PasI | CCCWGGG | 1 cut(s) | 1853 |
| PceI | AGGCCT | 4 cut(s) | 936, 1182, 1688, 2817 |
| PciI | ACATGT | 1 cut(s) | 2561 |
| PciSI | GCTCTTC | 1 cut(s) | 3266 |
| PctI | GAATGC | 2 cut(s) | 1514, 3237 |
| PdmI | GAANNNNTTC | 4 cut(s) | 197, 600, 893, 2784 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 521 |
| PfoI | TCCNGGA | 1 cut(s) | 201 |
| PkrI | GCNGC | 6 cut(s) | 80, 1274, 1681, 2240, 2335, 2338 |
| PleI | GAGTC | 5 cut(s) | 348, 1102, 2152, 2858, 3289 |
| PmaCI | CACGTG | 1 cut(s) | 398 |
| PmlI | CACGTG | 1 cut(s) | 398 |
| PpsI | GAGTC | 5 cut(s) | 348, 1102, 2152, 2858, 3289 |
| Ppu21I | YACGTR | 1 cut(s) | 398 |
| PscI | ACATGT | 1 cut(s) | 2561 |
| Psp124BI | GAGCTC | 1 cut(s) | 3045 |
| Psp6I | CCWGG | 4 cut(s) | 201, 1542, 1852, 2720 |
| PspCI | CACGTG | 1 cut(s) | 398 |
| PspFI | CCCAGC | 2 cut(s) | 1083, 1420 |
| PspGI | CCWGG | 4 cut(s) | 201, 1542, 1852, 2720 |
| PspPI | GGNCC | 3 cut(s) | 608, 1763, 2288 |
| PstI | CTGCAG | 1 cut(s) | 416 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1706 |
| PsuI | RGATCY | 3 cut(s) | 369, 1204, 1447 |
| PvuII | CAGCTG | 2 cut(s) | 280, 1835 |
| RsaI | GTAC | 6 cut(s) | 847, 857, 1191, 1961, 2517, 2822 |
| RsaNI | GTAC | 6 cut(s) | 846, 856, 1190, 1960, 2516, 2821 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2100 |
| SacI | GAGCTC | 1 cut(s) | 3045 |
| SapI | GCTCTTC | 1 cut(s) | 3266 |
| SatI | GCNGC | 6 cut(s) | 79, 1273, 1680, 2239, 2334, 2337 |
| Sau96I | GGNCC | 3 cut(s) | 608, 1763, 2288 |
| SchI | GAGTC | 5 cut(s) | 349, 1102, 2153, 2858, 3289 |
| ScrFI | CCNGG | 7 cut(s) | 203, 663, 1544, 1854, 2722, 3266, 3267 |
| SduI | GDGCHC | 1 cut(s) | 3045 |
| SfaNI | GCATC | 5 cut(s) | 90, 237, 439, 1936, 2584 |
| SfcI | CTRYAG | 2 cut(s) | 412, 729 |
| SinI | GGWCC | 2 cut(s) | 608, 2288 |
| SmaI | CCCGGG | 1 cut(s) | 3267 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2100 |
| SphI | GCATGC | 1 cut(s) | 656 |
| SseBI | AGGCCT | 4 cut(s) | 936, 1182, 1688, 2817 |
| SsiI | CCGC | 4 cut(s) | 58, 957, 1789, 2436 |
| SspI | AATATT | 1 cut(s) | 1779 |
| SspMI | CTAG | 8 cut(s) | 311, 753, 1097, 1590, 1697, 1731, 2069, 2873 |
| SstI | GAGCTC | 1 cut(s) | 3045 |
| StuI | AGGCCT | 4 cut(s) | 936, 1182, 1688, 2817 |
| StyD4I | CCNGG | 7 cut(s) | 201, 661, 1542, 1852, 2720, 3264, 3265 |
| StyI | CCWWGG | 4 cut(s) | 828, 1096, 2137, 3387 |
| TaiI | ACGT | 3 cut(s) | 400, 678, 881 |
| TaqII | GACCGA | 1 cut(s) | 2469 |
| TatI | WGTACW | 2 cut(s) | 1189, 2515 |
| TscAI | CASTG | 7 cut(s) | 588, 1066, 1711, 2260, 2973, 3086, 3265 |
| TseFI | GTSAC | 3 cut(s) | 422, 1057, 1702 |
| TseI | GCWGC | 6 cut(s) | 78, 1272, 1679, 2238, 2333, 2336 |
| Tsp45I | GTSAC | 3 cut(s) | 422, 1057, 1702 |
| TspGWI | ACGGA | 4 cut(s) | 73, 583, 833, 3200 |
| TspMI | CCCGGG | 1 cut(s) | 3265 |
| TspRI | CASTG | 7 cut(s) | 588, 1066, 1711, 2260, 2973, 3086, 3265 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 521 |
| VpaK11BI | GGWCC | 2 cut(s) | 608, 2288 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3321 |
| XapI | RAATTY | 6 cut(s) | 920, 2475, 2529, 2784, 3244, 3364 |
| XbaI | TCTAGA | 1 cut(s) | 1730 |
| XceI | RCATGY | 4 cut(s) | 656, 1260, 1405, 2565 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 2718, 3385 |
| XmaI | CCCGGG | 1 cut(s) | 3265 |
| XmaJI | CCTAGG | 1 cut(s) | 1096 |
| XmnI | GAANNNNTTC | 4 cut(s) | 197, 600, 893, 2784 |
| XspI | CTAG | 8 cut(s) | 311, 753, 1097, 1590, 1697, 1731, 2069, 2873 |
| Zsp2I | ATGCAT | 1 cut(s) | 1407 |