Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1022 |
| Acc36I | ACCTGC | 1 cut(s) | 1022 |
| AccB1I | GGYRCC | 1 cut(s) | 757 |
| AccIII | TCCGGA | 1 cut(s) | 424 |
| AciI | CCGC | 3 cut(s) | 374, 404, 1041 |
| AclWI | GGATC | 1 cut(s) | 242 |
| AcsI | RAATTY | 2 cut(s) | 268, 364 |
| AcuI | CTGAAG | 3 cut(s) | 99, 125, 1308 |
| AdeI | CACNNNGTG | 1 cut(s) | 842 |
| AfaI | GTAC | 3 cut(s) | 27, 226, 597 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 61, 581, 586, 667, 1162 |
| AflII | CTTAAG | 1 cut(s) | 941 |
| AflIII | ACRYGT | 2 cut(s) | 598, 977 |
| AgsI | TTSAA | 2 cut(s) | 1145, 1169 |
| AhlI | ACTAGT | 1 cut(s) | 518 |
| AjiI | CACGTC | 1 cut(s) | 980 |
| AjnI | CCWGG | 2 cut(s) | 580, 1360 |
| AleI | CACNNNNGTG | 1 cut(s) | 1025 |
| Alw21I | GWGCWC | 1 cut(s) | 516 |
| Alw26I | GTCTC | 3 cut(s) | 31, 186, 695 |
| AlwI | GGATC | 1 cut(s) | 242 |
| Aor13HI | TCCGGA | 1 cut(s) | 424 |
| AoxI | GGCC | 2 cut(s) | 263, 1080 |
| ApeKI | GCWGC | 2 cut(s) | 569, 1063 |
| ApoI | RAATTY | 2 cut(s) | 268, 364 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 366 |
| AspS9I | GGNCC | 3 cut(s) | 175, 200, 293 |
| AsuHPI | GGTGA | 2 cut(s) | 157, 176 |
| AsuNHI | GCTAGC | 2 cut(s) | 1291, 1303 |
| AvaII | GGWCC | 3 cut(s) | 175, 200, 293 |
| BanI | GGYRCC | 1 cut(s) | 757 |
| BauI | CACGAG | 1 cut(s) | 840 |
| Bbv12I | GWGCWC | 1 cut(s) | 516 |
| BbvI | GCAGC | 2 cut(s) | 581, 1075 |
| BccI | CCATC | 5 cut(s) | 196, 319, 326, 665, 1178 |
| BciT130I | CCWGG | 2 cut(s) | 582, 1362 |
| BclI | TGATCA | 1 cut(s) | 967 |
| BcoDI | GTCTC | 3 cut(s) | 31, 186, 695 |
| BcuI | ACTAGT | 1 cut(s) | 518 |
| BfaI | CTAG | 7 cut(s) | 519, 803, 830, 1109, 1127, 1292, 1304 |
| BfmI | CTRYAG | 1 cut(s) | 1157 |
| BfrI | CTTAAG | 1 cut(s) | 941 |
| BfuAI | ACCTGC | 1 cut(s) | 1022 |
| BisI | GCNGC | 2 cut(s) | 570, 1064 |
| BlsI | GCNGC | 2 cut(s) | 571, 1065 |
| Bme1390I | CCNGG | 2 cut(s) | 582, 1362 |
| Bme18I | GGWCC | 3 cut(s) | 175, 200, 293 |
| BmgBI | CACGTC | 1 cut(s) | 980 |
| BmgT120I | GGNCC | 3 cut(s) | 175, 200, 293 |
| BmiI | GGNNCC | 2 cut(s) | 295, 759 |
| BmrFI | CCNGG | 2 cut(s) | 582, 1362 |
| BmrI | ACTGGG | 1 cut(s) | 656 |
| BmsI | GCATC | 1 cut(s) | 1000 |
| BmtI | GCTAGC | 2 cut(s) | 1295, 1307 |
| BmuI | ACTGGG | 1 cut(s) | 656 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 341, 373, 1106, 1138 |
| BpmI | CTGGAG | 1 cut(s) | 1116 |
| Bsa29I | ATCGAT | 1 cut(s) | 954 |
| BsaI | GGTCTC | 1 cut(s) | 695 |
| BsaJI | CCNNGG | 4 cut(s) | 251, 260, 580, 1083 |
| BsaWI | WCCGGW | 2 cut(s) | 424, 772 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 61, 581, 586, 667, 1162 |
| Bse1I | ACTGG | 2 cut(s) | 662, 1133 |
| BseAI | TCCGGA | 1 cut(s) | 424 |
| BseBI | CCWGG | 2 cut(s) | 582, 1362 |
| BseCI | ATCGAT | 1 cut(s) | 954 |
| BseDI | CCNNGG | 4 cut(s) | 251, 260, 580, 1083 |
| BseGI | GGATG | 5 cut(s) | 250, 337, 382, 505, 676 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 61, 581, 586, 667, 1162 |
| BseMII | CTCAG | 1 cut(s) | 658 |
| BseNI | ACTGG | 2 cut(s) | 662, 1133 |
| BseRI | GAGGAG | 3 cut(s) | 291, 713, 1130 |
| BseXI | GCAGC | 2 cut(s) | 581, 1075 |
| BshFI | GGCC | 2 cut(s) | 265, 1082 |
| BshNI | GGYRCC | 1 cut(s) | 757 |
| BshVI | ATCGAT | 1 cut(s) | 954 |
| BsiHKAI | GWGCWC | 1 cut(s) | 516 |
| BsiSI | CCGG | 2 cut(s) | 425, 773 |
| BslFI | GGGAC | 3 cut(s) | 279, 644, 1340 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 61, 581, 586, 667, 1162 |
| BsmAI | GTCTC | 3 cut(s) | 31, 186, 695 |
| BsmFI | GGGAC | 3 cut(s) | 279, 644, 1340 |
| BsmI | GAATGC | 1 cut(s) | 86 |
| BsnI | GGCC | 2 cut(s) | 265, 1082 |
| Bso31I | GGTCTC | 1 cut(s) | 695 |
| Bsp1286I | GDGCHC | 1 cut(s) | 516 |
| Bsp13I | TCCGGA | 1 cut(s) | 424 |
| Bsp143I | GATC | 4 cut(s) | 43, 247, 319, 967 |
| BspACI | CCGC | 3 cut(s) | 374, 404, 1041 |
| BspANI | GGCC | 2 cut(s) | 265, 1082 |
| BspCNI | CTCAG | 1 cut(s) | 657 |
| BspDI | ATCGAT | 1 cut(s) | 954 |
| BspEI | TCCGGA | 1 cut(s) | 424 |
| BspLI | GGNNCC | 2 cut(s) | 295, 759 |
| BspMAI | CTGCAG | 1 cut(s) | 1161 |
| BspMI | ACCTGC | 1 cut(s) | 1022 |
| BspOI | GCTAGC | 2 cut(s) | 1295, 1307 |
| BspPI | GGATC | 1 cut(s) | 242 |
| BspT107I | GGYRCC | 1 cut(s) | 757 |
| BspTI | CTTAAG | 1 cut(s) | 941 |
| BspTNI | GGTCTC | 1 cut(s) | 695 |
| BsrI | ACTGG | 2 cut(s) | 662, 1133 |
| BssECI | CCNNGG | 4 cut(s) | 251, 260, 580, 1083 |
| BssMI | GATC | 4 cut(s) | 43, 247, 319, 967 |
| BssSI | CACGAG | 1 cut(s) | 840 |
| BssT1I | CCWWGG | 3 cut(s) | 251, 260, 1083 |
| Bst2BI | CACGAG | 1 cut(s) | 840 |
| Bst2UI | CCWGG | 2 cut(s) | 582, 1362 |
| Bst4CI | ACNGT | 3 cut(s) | 224, 926, 1024 |
| Bst6I | CTCTTC | 3 cut(s) | 97, 649, 690 |
| BstAFI | CTTAAG | 1 cut(s) | 941 |
| BstC8I | GCNNGC | 7 cut(s) | 813, 1039, 1090, 1106, 1157, 1293, 1305 |
| BstDEI | CTNAG | 4 cut(s) | 407, 644, 1308, 1367 |
| BstF5I | GGATG | 5 cut(s) | 250, 337, 382, 505, 676 |
| BstKTI | GATC | 4 cut(s) | 46, 250, 322, 970 |
| BstMAI | GTCTC | 3 cut(s) | 31, 186, 695 |
| BstMBI | GATC | 4 cut(s) | 43, 247, 319, 967 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 380, 808, 1313 |
| BstNI | CCWGG | 2 cut(s) | 582, 1362 |
| BstNSI | RCATGY | 2 cut(s) | 602, 1355 |
| BstSCI | CCNGG | 2 cut(s) | 580, 1360 |
| BstSFI | CTRYAG | 1 cut(s) | 1157 |
| BstV1I | GCAGC | 2 cut(s) | 581, 1075 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 552, 1184 |
| Bsu15I | ATCGAT | 1 cut(s) | 954 |
| BsuRI | GGCC | 2 cut(s) | 265, 1082 |
| BsuTUI | ATCGAT | 1 cut(s) | 954 |
| BtrI | CACGTC | 1 cut(s) | 980 |
| BtsCI | GGATG | 5 cut(s) | 250, 337, 382, 505, 676 |
| BtsIMutI | CAGTG | 1 cut(s) | 1052 |
| BveI | ACCTGC | 1 cut(s) | 1022 |
| Cac8I | GCNNGC | 7 cut(s) | 813, 1039, 1090, 1106, 1157, 1293, 1305 |
| Cfr13I | GGNCC | 3 cut(s) | 175, 200, 293 |
| ClaI | ATCGAT | 1 cut(s) | 954 |
| Csp6I | GTAC | 3 cut(s) | 26, 225, 596 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1056, 1091 |
| CviAII | CATG | 5 cut(s) | 68, 599, 713, 1268, 1352 |
| CviQI | GTAC | 3 cut(s) | 26, 225, 596 |
| DdeI | CTNAG | 4 cut(s) | 407, 644, 1308, 1367 |
| DpnI | GATC | 4 cut(s) | 45, 249, 321, 969 |
| DpnII | GATC | 4 cut(s) | 43, 247, 319, 967 |
| DraIII | CACNNNGTG | 1 cut(s) | 842 |
| Eam1104I | CTCTTC | 3 cut(s) | 97, 649, 690 |
| EarI | CTCTTC | 3 cut(s) | 97, 649, 690 |
| Eco130I | CCWWGG | 3 cut(s) | 251, 260, 1083 |
| Eco147I | AGGCCT | 1 cut(s) | 1082 |
| Eco31I | GGTCTC | 1 cut(s) | 695 |
| Eco47I | GGWCC | 3 cut(s) | 175, 200, 293 |
| Eco57I | CTGAAG | 3 cut(s) | 99, 125, 1308 |
| EcoRII | CCWGG | 2 cut(s) | 580, 1360 |
| EcoT14I | CCWWGG | 3 cut(s) | 251, 260, 1083 |
| ErhI | CCWWGG | 3 cut(s) | 251, 260, 1083 |
| FaeI | CATG | 5 cut(s) | 71, 602, 716, 1271, 1355 |
| FaqI | GGGAC | 3 cut(s) | 279, 644, 1340 |
| FatI | CATG | 5 cut(s) | 67, 598, 712, 1267, 1351 |
| FbaI | TGATCA | 1 cut(s) | 967 |
| Fnu4HI | GCNGC | 2 cut(s) | 570, 1064 |
| FokI | GGATG | 5 cut(s) | 257, 344, 389, 492, 683 |
| Fsp4HI | GCNGC | 2 cut(s) | 570, 1064 |
| FspBI | CTAG | 7 cut(s) | 519, 803, 830, 1109, 1127, 1292, 1304 |
| GluI | GCNGC | 2 cut(s) | 570, 1064 |
| GsuI | CTGGAG | 1 cut(s) | 1116 |
| HaeIII | GGCC | 2 cut(s) | 265, 1082 |
| HapII | CCGG | 2 cut(s) | 425, 773 |
| Hin1II | CATG | 5 cut(s) | 71, 602, 716, 1271, 1355 |
| HindIII | AAGCTT | 2 cut(s) | 137, 381 |
| HinfI | GANTC | 3 cut(s) | 256, 657, 1280 |
| HpaII | CCGG | 2 cut(s) | 425, 773 |
| HphI | GGTGA | 2 cut(s) | 157, 176 |
| Hpy166II | GTNNAC | 3 cut(s) | 26, 148, 465 |
| Hpy188I | TCNGA | 7 cut(s) | 237, 324, 361, 647, 694, 1007, 1054 |
| Hpy188III | TCNNGA | 3 cut(s) | 198, 425, 1326 |
| Hpy8I | GTNNAC | 3 cut(s) | 26, 148, 465 |
| Hpy99I | CGWCG | 1 cut(s) | 984 |
| HpyCH4III | ACNGT | 3 cut(s) | 224, 926, 1024 |
| HpyCH4IV | ACGT | 1 cut(s) | 979 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 380, 808, 1313 |
| HpyF3I | CTNAG | 4 cut(s) | 407, 644, 1308, 1367 |
| HpySE526I | ACGT | 1 cut(s) | 979 |
| Hsp92II | CATG | 5 cut(s) | 71, 602, 716, 1271, 1355 |
| Kpn2I | TCCGGA | 1 cut(s) | 424 |
| Ksp22I | TGATCA | 1 cut(s) | 967 |
| Kzo9I | GATC | 4 cut(s) | 43, 247, 319, 967 |
| LmnI | GCTCC | 3 cut(s) | 401, 577, 1135 |
| Lsp1109I | GCAGC | 2 cut(s) | 581, 1075 |
| LweI | GCATC | 1 cut(s) | 1000 |
| MaeI | CTAG | 7 cut(s) | 519, 803, 830, 1109, 1127, 1292, 1304 |
| MaeII | ACGT | 1 cut(s) | 979 |
| MaeIII | GTNAC | 4 cut(s) | 686, 832, 959, 1382 |
| MalI | GATC | 4 cut(s) | 45, 249, 321, 969 |
| MboI | GATC | 4 cut(s) | 43, 247, 319, 967 |
| MboII | GAAGA | 5 cut(s) | 84, 164, 519, 666, 707 |
| MhlI | GDGCHC | 1 cut(s) | 516 |
| MlyI | GAGTC | 1 cut(s) | 666 |
| MmeI | TCCRAC | 3 cut(s) | 153, 196, 890 |
| MroI | TCCGGA | 1 cut(s) | 424 |
| MroXI | GAANNNNTTC | 1 cut(s) | 366 |
| MseI | TTAA | 2 cut(s) | 591, 942 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1025 |
| MspCI | CTTAAG | 1 cut(s) | 941 |
| MspI | CCGG | 2 cut(s) | 425, 773 |
| MspR9I | CCNGG | 2 cut(s) | 582, 1362 |
| Mva1269I | GAATGC | 1 cut(s) | 86 |
| MvaI | CCWGG | 2 cut(s) | 582, 1362 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 380, 808, 1313 |
| NdeII | GATC | 4 cut(s) | 43, 247, 319, 967 |
| NheI | GCTAGC | 2 cut(s) | 1291, 1303 |
| NlaIII | CATG | 5 cut(s) | 71, 602, 716, 1271, 1355 |
| NlaIV | GGNNCC | 2 cut(s) | 295, 759 |
| NmuCI | GTSAC | 2 cut(s) | 832, 959 |
| NspI | RCATGY | 2 cut(s) | 602, 1355 |
| OliI | CACNNNNGTG | 1 cut(s) | 1025 |
| PaqCI | CACCTGC | 1 cut(s) | 1022 |
| PceI | AGGCCT | 1 cut(s) | 1082 |
| PciI | ACATGT | 1 cut(s) | 598 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 52 |
| PctI | GAATGC | 1 cut(s) | 86 |
| PdmI | GAANNNNTTC | 1 cut(s) | 366 |
| PfeI | GAWTC | 2 cut(s) | 256, 1280 |
| PfoI | TCCNGGA | 1 cut(s) | 1360 |
| PkrI | GCNGC | 2 cut(s) | 571, 1065 |
| PleI | GAGTC | 1 cut(s) | 665 |
| PpsI | GAGTC | 1 cut(s) | 665 |
| PscI | ACATGT | 1 cut(s) | 598 |
| Psp6I | CCWGG | 2 cut(s) | 580, 1360 |
| PspGI | CCWGG | 2 cut(s) | 580, 1360 |
| PspN4I | GGNNCC | 2 cut(s) | 295, 759 |
| PspPI | GGNCC | 3 cut(s) | 175, 200, 293 |
| PstI | CTGCAG | 1 cut(s) | 1161 |
| RsaI | GTAC | 3 cut(s) | 27, 226, 597 |
| RsaNI | GTAC | 3 cut(s) | 26, 225, 596 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1025 |
| SaqAI | TTAA | 2 cut(s) | 591, 942 |
| SatI | GCNGC | 2 cut(s) | 570, 1064 |
| Sau3AI | GATC | 4 cut(s) | 43, 247, 319, 967 |
| Sau96I | GGNCC | 3 cut(s) | 175, 200, 293 |
| SchI | GAGTC | 1 cut(s) | 666 |
| ScrFI | CCNGG | 2 cut(s) | 582, 1362 |
| SduI | GDGCHC | 1 cut(s) | 516 |
| SfaNI | GCATC | 1 cut(s) | 1000 |
| SfcI | CTRYAG | 1 cut(s) | 1157 |
| SinI | GGWCC | 3 cut(s) | 175, 200, 293 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1025 |
| SmlI | CTYRAG | 1 cut(s) | 941 |
| SmoI | CTYRAG | 1 cut(s) | 941 |
| SpeI | ACTAGT | 1 cut(s) | 518 |
| SseBI | AGGCCT | 1 cut(s) | 1082 |
| SsiI | CCGC | 3 cut(s) | 374, 404, 1041 |
| SspMI | CTAG | 7 cut(s) | 519, 803, 830, 1109, 1127, 1292, 1304 |
| StuI | AGGCCT | 1 cut(s) | 1082 |
| StyD4I | CCNGG | 2 cut(s) | 580, 1360 |
| StyI | CCWWGG | 3 cut(s) | 251, 260, 1083 |
| TaaI | ACNGT | 3 cut(s) | 224, 926, 1024 |
| TaiI | ACGT | 1 cut(s) | 982 |
| TaqI | TCGA | 3 cut(s) | 46, 652, 954 |
| TatI | WGTACW | 1 cut(s) | 25 |
| TfiI | GAWTC | 2 cut(s) | 256, 1280 |
| Tru1I | TTAA | 2 cut(s) | 591, 942 |
| Tru9I | TTAA | 2 cut(s) | 591, 942 |
| TscAI | CASTG | 1 cut(s) | 1052 |
| TseFI | GTSAC | 2 cut(s) | 832, 959 |
| TseI | GCWGC | 2 cut(s) | 569, 1063 |
| Tsp45I | GTSAC | 2 cut(s) | 832, 959 |
| TspDTI | ATGAA | 2 cut(s) | 393, 467 |
| TspGWI | ACGGA | 1 cut(s) | 44 |
| TspRI | CASTG | 1 cut(s) | 1052 |
| Vha464I | CTTAAG | 1 cut(s) | 941 |
| VpaK11BI | GGWCC | 3 cut(s) | 175, 200, 293 |
| XapI | RAATTY | 2 cut(s) | 268, 364 |
| XceI | RCATGY | 2 cut(s) | 602, 1355 |
| XmnI | GAANNNNTTC | 1 cut(s) | 366 |
| XspI | CTAG | 7 cut(s) | 519, 803, 830, 1109, 1127, 1292, 1304 |