Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 416 |
| Acc36I | ACCTGC | 1 cut(s) | 416 |
| AccI | GTMKAC | 1 cut(s) | 582 |
| AciI | CCGC | 5 cut(s) | 578, 661, 684, 733, 766 |
| AclWI | GGATC | 2 cut(s) | 65, 338 |
| AcoI | YGGCCR | 1 cut(s) | 357 |
| AcuI | CTGAAG | 3 cut(s) | 117, 237, 243 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 257, 738 |
| AgsI | TTSAA | 2 cut(s) | 200, 213 |
| AjnI | CCWGG | 2 cut(s) | 332, 359 |
| AluBI | AGCT | 6 cut(s) | 170, 203, 221, 227, 480, 487 |
| AluI | AGCT | 6 cut(s) | 170, 203, 221, 227, 480, 487 |
| Alw26I | GTCTC | 1 cut(s) | 95 |
| AlwI | GGATC | 2 cut(s) | 65, 338 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 366, 431, 512 |
| AoxI | GGCC | 2 cut(s) | 357, 398 |
| ApeKI | GCWGC | 4 cut(s) | 170, 366, 549, 677 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 538, 570 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 195 |
| AspLEI | GCGC | 1 cut(s) | 366 |
| AspS9I | GGNCC | 2 cut(s) | 398, 468 |
| AsuC2I | CCSGG | 1 cut(s) | 175 |
| AsuHPI | GGTGA | 1 cut(s) | 140 |
| AvaII | GGWCC | 1 cut(s) | 468 |
| BaeGI | GKGCMC | 1 cut(s) | 80 |
| BalI | TGGCCA | 1 cut(s) | 359 |
| BanII | GRGCYC | 2 cut(s) | 28, 746 |
| BbsI | GAAGAC | 2 cut(s) | 432, 731 |
| BbvI | GCAGC | 4 cut(s) | 157, 353, 561, 664 |
| BccI | CCATC | 1 cut(s) | 242 |
| BceAI | ACGGC | 1 cut(s) | 720 |
| BciT130I | CCWGG | 2 cut(s) | 334, 361 |
| BcnI | CCSGG | 1 cut(s) | 175 |
| BcoDI | GTCTC | 1 cut(s) | 95 |
| BfaI | CTAG | 2 cut(s) | 459, 597 |
| BfmI | CTRYAG | 1 cut(s) | 85 |
| BfoI | RGCGCY | 1 cut(s) | 367 |
| BfuAI | ACCTGC | 1 cut(s) | 416 |
| BisI | GCNGC | 6 cut(s) | 171, 367, 550, 661, 678, 685 |
| BlsI | GCNGC | 6 cut(s) | 172, 368, 551, 662, 679, 686 |
| Bme1390I | CCNGG | 3 cut(s) | 175, 334, 361 |
| Bme18I | GGWCC | 1 cut(s) | 468 |
| BmgT120I | GGNCC | 2 cut(s) | 398, 468 |
| BmiI | GGNNCC | 2 cut(s) | 27, 743 |
| BmrFI | CCNGG | 3 cut(s) | 175, 334, 361 |
| BmsI | GCATC | 2 cut(s) | 518, 595 |
| BpiI | GAAGAC | 2 cut(s) | 432, 731 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 649, 681 |
| BpmI | CTGGAG | 1 cut(s) | 397 |
| BpuMI | CCSGG | 1 cut(s) | 175 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 577, 607 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 257, 738 |
| Bse118I | RCCGGY | 1 cut(s) | 680 |
| Bse1I | ACTGG | 1 cut(s) | 380 |
| Bse3DI | GCAATG | 2 cut(s) | 192, 420 |
| BseBI | CCWGG | 2 cut(s) | 334, 361 |
| BseGI | GGATG | 1 cut(s) | 234 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 257, 738 |
| BseMI | GCAATG | 2 cut(s) | 192, 420 |
| BseMII | CTCAG | 2 cut(s) | 131, 178 |
| BseNI | ACTGG | 1 cut(s) | 380 |
| BseRI | GAGGAG | 1 cut(s) | 651 |
| BseSI | GKGCMC | 1 cut(s) | 80 |
| BseXI | GCAGC | 4 cut(s) | 157, 353, 561, 664 |
| BseYI | CCCAGC | 1 cut(s) | 487 |
| BsgI | GTGCAG | 2 cut(s) | 29, 231 |
| BshFI | GGCC | 2 cut(s) | 359, 400 |
| BsiSI | CCGG | 2 cut(s) | 175, 681 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 257, 738 |
| BsmAI | GTCTC | 1 cut(s) | 95 |
| BsnI | GGCC | 2 cut(s) | 359, 400 |
| Bsp1286I | GDGCHC | 3 cut(s) | 28, 80, 746 |
| Bsp143I | GATC | 3 cut(s) | 57, 343, 759 |
| BspACI | CCGC | 5 cut(s) | 578, 661, 684, 733, 766 |
| BspANI | GGCC | 2 cut(s) | 359, 400 |
| BspCNI | CTCAG | 2 cut(s) | 132, 177 |
| BspLI | GGNNCC | 2 cut(s) | 27, 743 |
| BspMI | ACCTGC | 1 cut(s) | 416 |
| BspPI | GGATC | 2 cut(s) | 65, 338 |
| BsrDI | GCAATG | 2 cut(s) | 192, 420 |
| BsrFI | RCCGGY | 1 cut(s) | 680 |
| BsrI | ACTGG | 1 cut(s) | 380 |
| BssAI | RCCGGY | 1 cut(s) | 680 |
| BssMI | GATC | 3 cut(s) | 57, 343, 759 |
| Bst2UI | CCWGG | 2 cut(s) | 334, 361 |
| Bst6I | CTCTTC | 3 cut(s) | 93, 201, 644 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 43 |
| BstC8I | GCNNGC | 3 cut(s) | 44, 682, 733 |
| BstDEI | CTNAG | 3 cut(s) | 140, 164, 694 |
| BstF5I | GGATG | 1 cut(s) | 234 |
| BstH2I | RGCGCY | 1 cut(s) | 367 |
| BstHHI | GCGC | 1 cut(s) | 366 |
| BstKTI | GATC | 3 cut(s) | 60, 346, 762 |
| BstMAI | GTCTC | 1 cut(s) | 95 |
| BstMBI | GATC | 3 cut(s) | 57, 343, 759 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 43, 741 |
| BstNI | CCWGG | 2 cut(s) | 334, 361 |
| BstSCI | CCNGG | 3 cut(s) | 173, 332, 359 |
| BstSFI | CTRYAG | 1 cut(s) | 85 |
| BstSLI | GKGCMC | 1 cut(s) | 80 |
| BstV1I | GCAGC | 4 cut(s) | 157, 353, 561, 664 |
| BstV2I | GAAGAC | 2 cut(s) | 432, 731 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 355 |
| BsuRI | GGCC | 2 cut(s) | 359, 400 |
| BtgZI | GCGATG | 1 cut(s) | 734 |
| BtsCI | GGATG | 1 cut(s) | 234 |
| BtsI | GCAGTG | 1 cut(s) | 243 |
| BtsIMutI | CAGTG | 1 cut(s) | 243 |
| BveI | ACCTGC | 1 cut(s) | 416 |
| Cac8I | GCNNGC | 3 cut(s) | 44, 682, 733 |
| CaiI | CAGNNNCTG | 3 cut(s) | 366, 431, 512 |
| CfoI | GCGC | 1 cut(s) | 366 |
| Cfr10I | RCCGGY | 1 cut(s) | 680 |
| Cfr13I | GGNCC | 2 cut(s) | 398, 468 |
| CviAII | CATG | 1 cut(s) | 530 |
| DdeI | CTNAG | 3 cut(s) | 140, 164, 694 |
| DpnI | GATC | 3 cut(s) | 59, 345, 761 |
| DpnII | GATC | 3 cut(s) | 57, 343, 759 |
| EaeI | YGGCCR | 1 cut(s) | 357 |
| Eam1104I | CTCTTC | 3 cut(s) | 93, 201, 644 |
| EarI | CTCTTC | 3 cut(s) | 93, 201, 644 |
| Eco24I | GRGCYC | 2 cut(s) | 28, 746 |
| Eco47I | GGWCC | 1 cut(s) | 468 |
| Eco57I | CTGAAG | 3 cut(s) | 117, 237, 243 |
| EcoRII | CCWGG | 2 cut(s) | 332, 359 |
| EcoT22I | ATGCAT | 1 cut(s) | 39 |
| EcoT38I | GRGCYC | 2 cut(s) | 28, 746 |
| FaeI | CATG | 1 cut(s) | 533 |
| FaiI | YATR | 6 cut(s) | 18, 35, 39, 408, 414, 531 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 387, 419 |
| FatI | CATG | 1 cut(s) | 529 |
| FauI | CCCGC | 1 cut(s) | 740 |
| FblI | GTMKAC | 1 cut(s) | 582 |
| Fnu4HI | GCNGC | 6 cut(s) | 171, 367, 550, 661, 678, 685 |
| FokI | GGATG | 1 cut(s) | 221 |
| FriOI | GRGCYC | 2 cut(s) | 28, 746 |
| Fsp4HI | GCNGC | 6 cut(s) | 171, 367, 550, 661, 678, 685 |
| FspBI | CTAG | 2 cut(s) | 459, 597 |
| GlaI | GCGC | 1 cut(s) | 365 |
| GluI | GCNGC | 6 cut(s) | 171, 367, 550, 661, 678, 685 |
| GsaI | CCCAGC | 1 cut(s) | 491 |
| GsuI | CTGGAG | 1 cut(s) | 397 |
| HaeII | RGCGCY | 1 cut(s) | 367 |
| HaeIII | GGCC | 2 cut(s) | 359, 400 |
| HapII | CCGG | 2 cut(s) | 175, 681 |
| HhaI | GCGC | 1 cut(s) | 366 |
| Hin1II | CATG | 1 cut(s) | 533 |
| Hin6I | GCGC | 1 cut(s) | 364 |
| HinP1I | GCGC | 1 cut(s) | 364 |
| HindIII | AAGCTT | 2 cut(s) | 201, 225 |
| HinfI | GANTC | 7 cut(s) | 160, 178, 191, 261, 329, 455, 698 |
| HpaII | CCGG | 2 cut(s) | 175, 681 |
| HphI | GGTGA | 1 cut(s) | 140 |
| Hpy166II | GTNNAC | 2 cut(s) | 557, 583 |
| Hpy188I | TCNGA | 6 cut(s) | 141, 167, 454, 502, 570, 741 |
| Hpy188III | TCNNGA | 1 cut(s) | 757 |
| Hpy8I | GTNNAC | 2 cut(s) | 557, 583 |
| Hpy99I | CGWCG | 1 cut(s) | 741 |
| HpyAV | CCTTC | 2 cut(s) | 389, 757 |
| HpyCH4IV | ACGT | 2 cut(s) | 52, 437 |
| HpyCH4V | TGCA | 8 cut(s) | 37, 46, 185, 248, 369, 425, 591, 608 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 43, 741 |
| HpyF3I | CTNAG | 3 cut(s) | 140, 164, 694 |
| HpySE526I | ACGT | 2 cut(s) | 52, 437 |
| Hsp92II | CATG | 1 cut(s) | 533 |
| HspAI | GCGC | 1 cut(s) | 364 |
| KroI | GCCGGC | 1 cut(s) | 680 |
| KroNI | GCCGGC | 1 cut(s) | 682 |
| Kzo9I | GATC | 3 cut(s) | 57, 343, 759 |
| LmnI | GCTCC | 2 cut(s) | 31, 741 |
| Lsp1109I | GCAGC | 4 cut(s) | 157, 353, 561, 664 |
| LweI | GCATC | 2 cut(s) | 518, 595 |
| MaeI | CTAG | 2 cut(s) | 459, 597 |
| MaeII | ACGT | 2 cut(s) | 52, 437 |
| MalI | GATC | 3 cut(s) | 59, 345, 761 |
| MboI | GATC | 3 cut(s) | 57, 343, 759 |
| MboII | GAAGA | 8 cut(s) | 110, 188, 338, 432, 435, 518, 661, 736 |
| MhlI | GDGCHC | 3 cut(s) | 28, 80, 746 |
| MlsI | TGGCCA | 1 cut(s) | 359 |
| MluNI | TGGCCA | 1 cut(s) | 359 |
| MlyI | GAGTC | 1 cut(s) | 692 |
| MmeI | TCCRAC | 1 cut(s) | 719 |
| MnlI | CCTC | 8 cut(s) | 135, 148, 330, 372, 459, 629, 632, 675 |
| Mox20I | TGGCCA | 1 cut(s) | 359 |
| Mph1103I | ATGCAT | 1 cut(s) | 39 |
| MroNI | GCCGGC | 1 cut(s) | 680 |
| MroXI | GAANNNNTTC | 1 cut(s) | 195 |
| MscI | TGGCCA | 1 cut(s) | 359 |
| Msp20I | TGGCCA | 1 cut(s) | 359 |
| MspA1I | CMGCKG | 1 cut(s) | 480 |
| MspI | CCGG | 2 cut(s) | 175, 681 |
| MspR9I | CCNGG | 3 cut(s) | 175, 334, 361 |
| MvaI | CCWGG | 2 cut(s) | 334, 361 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 43, 741 |
| NaeI | GCCGGC | 1 cut(s) | 682 |
| NciI | CCSGG | 1 cut(s) | 175 |
| NdeII | GATC | 3 cut(s) | 57, 343, 759 |
| NgoMIV | GCCGGC | 1 cut(s) | 680 |
| NlaIII | CATG | 1 cut(s) | 533 |
| NlaIV | GGNNCC | 2 cut(s) | 27, 743 |
| NsiI | ATGCAT | 1 cut(s) | 39 |
| PaqCI | CACCTGC | 1 cut(s) | 416 |
| PdiI | GCCGGC | 1 cut(s) | 682 |
| PdmI | GAANNNNTTC | 1 cut(s) | 195 |
| PfeI | GAWTC | 6 cut(s) | 160, 178, 191, 261, 329, 455 |
| PfoI | TCCNGGA | 1 cut(s) | 332 |
| PkrI | GCNGC | 6 cut(s) | 172, 368, 551, 662, 679, 686 |
| PleI | GAGTC | 1 cut(s) | 692 |
| PpsI | GAGTC | 1 cut(s) | 692 |
| Psp6I | CCWGG | 2 cut(s) | 332, 359 |
| PspFI | CCCAGC | 1 cut(s) | 487 |
| PspGI | CCWGG | 2 cut(s) | 332, 359 |
| PspN4I | GGNNCC | 2 cut(s) | 27, 743 |
| PspPI | GGNCC | 2 cut(s) | 398, 468 |
| PstNI | CAGNNNCTG | 3 cut(s) | 366, 431, 512 |
| PvuII | CAGCTG | 1 cut(s) | 480 |
| SatI | GCNGC | 6 cut(s) | 171, 367, 550, 661, 678, 685 |
| Sau3AI | GATC | 3 cut(s) | 57, 343, 759 |
| Sau96I | GGNCC | 2 cut(s) | 398, 468 |
| SchI | GAGTC | 1 cut(s) | 692 |
| ScrFI | CCNGG | 3 cut(s) | 175, 334, 361 |
| SduI | GDGCHC | 3 cut(s) | 28, 80, 746 |
| SfaNI | GCATC | 2 cut(s) | 518, 595 |
| SfcI | CTRYAG | 1 cut(s) | 85 |
| SinI | GGWCC | 1 cut(s) | 468 |
| SsiI | CCGC | 5 cut(s) | 578, 661, 684, 733, 766 |
| SspMI | CTAG | 2 cut(s) | 459, 597 |
| StyD4I | CCNGG | 3 cut(s) | 173, 332, 359 |
| TaiI | ACGT | 2 cut(s) | 55, 440 |
| TaqI | TCGA | 2 cut(s) | 130, 279 |
| TauI | GCSGC | 2 cut(s) | 663, 687 |
| TfiI | GAWTC | 6 cut(s) | 160, 178, 191, 261, 329, 455 |
| TscAI | CASTG | 1 cut(s) | 250 |
| TseI | GCWGC | 4 cut(s) | 170, 366, 549, 677 |
| TspDTI | ATGAA | 6 cut(s) | 5, 17, 401, 435, 518, 737 |
| TspRI | CASTG | 1 cut(s) | 250 |
| VpaK11BI | GGWCC | 1 cut(s) | 468 |
| XmiI | GTMKAC | 1 cut(s) | 582 |
| XmnI | GAANNNNTTC | 1 cut(s) | 195 |
| XspI | CTAG | 2 cut(s) | 459, 597 |
| Zsp2I | ATGCAT | 1 cut(s) | 39 |