Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 457 |
| AciI | CCGC | 2 cut(s) | 58, 311 |
| AcsI | RAATTY | 1 cut(s) | 93 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 258 |
| AgsI | TTSAA | 1 cut(s) | 199 |
| AhlI | ACTAGT | 1 cut(s) | 359 |
| Alw26I | GTCTC | 1 cut(s) | 141 |
| Aor13HI | TCCGGA | 1 cut(s) | 457 |
| AoxI | GGCC | 2 cut(s) | 249, 434 |
| ApeKI | GCWGC | 1 cut(s) | 171 |
| ApoI | RAATTY | 1 cut(s) | 93 |
| AspLEI | GCGC | 1 cut(s) | 171 |
| AspS9I | GGNCC | 2 cut(s) | 249, 372 |
| AsuHPI | GGTGA | 1 cut(s) | 236 |
| AvaII | GGWCC | 1 cut(s) | 372 |
| BbvI | GCAGC | 1 cut(s) | 183 |
| BccI | CCATC | 2 cut(s) | 48, 221 |
| BciVI | GTATCC | 1 cut(s) | 255 |
| BcoDI | GTCTC | 1 cut(s) | 141 |
| BcuI | ACTAGT | 1 cut(s) | 359 |
| BfaI | CTAG | 2 cut(s) | 62, 360 |
| BfuI | GTATCC | 1 cut(s) | 255 |
| BisI | GCNGC | 2 cut(s) | 59, 172 |
| BlsI | GCNGC | 2 cut(s) | 60, 173 |
| Bme18I | GGWCC | 1 cut(s) | 372 |
| BmgT120I | GGNCC | 2 cut(s) | 249, 372 |
| BmiI | GGNNCC | 2 cut(s) | 124, 374 |
| BmsI | GCATC | 2 cut(s) | 183, 292 |
| BpuEI | CTTGAG | 1 cut(s) | 291 |
| BsaJI | CCNNGG | 1 cut(s) | 449 |
| BsaWI | WCCGGW | 1 cut(s) | 457 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 208, 238 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 258 |
| Bse1I | ACTGG | 1 cut(s) | 296 |
| Bse3DI | GCAATG | 1 cut(s) | 390 |
| BseAI | TCCGGA | 1 cut(s) | 457 |
| BseDI | CCNNGG | 1 cut(s) | 449 |
| BseGI | GGATG | 2 cut(s) | 59, 307 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 258 |
| BseMI | GCAATG | 1 cut(s) | 390 |
| BseNI | ACTGG | 1 cut(s) | 296 |
| BseXI | GCAGC | 1 cut(s) | 183 |
| BshFI | GGCC | 2 cut(s) | 251, 436 |
| BsiSI | CCGG | 2 cut(s) | 437, 458 |
| BslFI | GGGAC | 1 cut(s) | 358 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 258 |
| BsmAI | GTCTC | 1 cut(s) | 141 |
| BsmFI | GGGAC | 1 cut(s) | 358 |
| BsnI | GGCC | 2 cut(s) | 251, 436 |
| Bsp13I | TCCGGA | 1 cut(s) | 457 |
| BspACI | CCGC | 2 cut(s) | 58, 311 |
| BspANI | GGCC | 2 cut(s) | 251, 436 |
| BspEI | TCCGGA | 1 cut(s) | 457 |
| BspLI | GGNNCC | 2 cut(s) | 124, 374 |
| BsrDI | GCAATG | 1 cut(s) | 390 |
| BsrI | ACTGG | 1 cut(s) | 296 |
| BssECI | CCNNGG | 1 cut(s) | 449 |
| BssT1I | CCWWGG | 1 cut(s) | 449 |
| Bst4CI | ACNGT | 1 cut(s) | 481 |
| Bst6I | CTCTTC | 1 cut(s) | 458 |
| BstC8I | GCNNGC | 2 cut(s) | 233, 434 |
| BstF5I | GGATG | 2 cut(s) | 59, 307 |
| BstHHI | GCGC | 1 cut(s) | 171 |
| BstMAI | GTCTC | 1 cut(s) | 141 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 41, 55 |
| BstNSI | RCATGY | 1 cut(s) | 235 |
| BstV1I | GCAGC | 1 cut(s) | 183 |
| BsuI | GTATCC | 1 cut(s) | 255 |
| BsuRI | GGCC | 2 cut(s) | 251, 436 |
| BtsCI | GGATG | 2 cut(s) | 59, 307 |
| BtsIMutI | CAGTG | 2 cut(s) | 187, 303 |
| Cac8I | GCNNGC | 2 cut(s) | 233, 434 |
| CfoI | GCGC | 1 cut(s) | 171 |
| Cfr13I | GGNCC | 2 cut(s) | 249, 372 |
| CviAII | CATG | 3 cut(s) | 37, 165, 232 |
| CviJI | RGCY | 4 cut(s) | 61, 104, 251, 436 |
| CviKI_1 | RGCY | 4 cut(s) | 61, 104, 251, 436 |
| DraI | TTTAAA | 1 cut(s) | 10 |
| Eam1104I | CTCTTC | 1 cut(s) | 458 |
| EarI | CTCTTC | 1 cut(s) | 458 |
| Eco130I | CCWWGG | 1 cut(s) | 449 |
| Eco32I | GATATC | 1 cut(s) | 16 |
| Eco47I | GGWCC | 1 cut(s) | 372 |
| EcoO109I | RGGNCCY | 1 cut(s) | 372 |
| EcoRV | GATATC | 1 cut(s) | 16 |
| EcoT14I | CCWWGG | 1 cut(s) | 449 |
| ErhI | CCWWGG | 1 cut(s) | 449 |
| FaeI | CATG | 3 cut(s) | 40, 168, 235 |
| FaiI | YATR | 8 cut(s) | 25, 38, 166, 233, 280, 338, 345, 413 |
| FaqI | GGGAC | 1 cut(s) | 358 |
| FatI | CATG | 3 cut(s) | 36, 164, 231 |
| Fnu4HI | GCNGC | 2 cut(s) | 59, 172 |
| FokI | GGATG | 2 cut(s) | 66, 314 |
| Fsp4HI | GCNGC | 2 cut(s) | 59, 172 |
| FspBI | CTAG | 2 cut(s) | 62, 360 |
| GlaI | GCGC | 1 cut(s) | 170 |
| GluI | GCNGC | 2 cut(s) | 59, 172 |
| HaeIII | GGCC | 2 cut(s) | 251, 436 |
| HapII | CCGG | 2 cut(s) | 437, 458 |
| HhaI | GCGC | 1 cut(s) | 171 |
| Hin1II | CATG | 3 cut(s) | 40, 168, 235 |
| Hin6I | GCGC | 1 cut(s) | 169 |
| HinP1I | GCGC | 1 cut(s) | 169 |
| HinfI | GANTC | 4 cut(s) | 149, 421, 445, 454 |
| HpaII | CCGG | 2 cut(s) | 437, 458 |
| HphI | GGTGA | 1 cut(s) | 236 |
| Hpy166II | GTNNAC | 1 cut(s) | 477 |
| Hpy188I | TCNGA | 2 cut(s) | 276, 384 |
| Hpy188III | TCNNGA | 1 cut(s) | 458 |
| Hpy8I | GTNNAC | 1 cut(s) | 477 |
| HpyAV | CCTTC | 4 cut(s) | 165, 193, 342, 465 |
| HpyCH4III | ACNGT | 1 cut(s) | 481 |
| HpyCH4V | TGCA | 1 cut(s) | 395 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 41, 55 |
| Hsp92II | CATG | 3 cut(s) | 40, 168, 235 |
| HspAI | GCGC | 1 cut(s) | 169 |
| Kpn2I | TCCGGA | 1 cut(s) | 457 |
| LmnI | GCTCC | 1 cut(s) | 340 |
| LpnPI | CCDG | 6 cut(s) | 35, 189, 309, 418, 450, 471 |
| Lsp1109I | GCAGC | 1 cut(s) | 183 |
| LweI | GCATC | 2 cut(s) | 183, 292 |
| MaeI | CTAG | 2 cut(s) | 62, 360 |
| MaeIII | GTNAC | 1 cut(s) | 64 |
| MboII | GAAGA | 1 cut(s) | 475 |
| MluCI | AATT | 4 cut(s) | 93, 140, 256, 268 |
| MlyI | GAGTC | 3 cut(s) | 143, 430, 463 |
| MmeI | TCCRAC | 1 cut(s) | 299 |
| MnlI | CCTC | 3 cut(s) | 84, 363, 461 |
| MroI | TCCGGA | 1 cut(s) | 457 |
| MseI | TTAA | 2 cut(s) | 9, 240 |
| MslI | CAYNNNNRTG | 1 cut(s) | 163 |
| MspI | CCGG | 2 cut(s) | 437, 458 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 41, 55 |
| NlaIII | CATG | 3 cut(s) | 40, 168, 235 |
| NlaIV | GGNNCC | 2 cut(s) | 124, 374 |
| NspI | RCATGY | 1 cut(s) | 235 |
| PaeI | GCATGC | 1 cut(s) | 235 |
| PfeI | GAWTC | 1 cut(s) | 445 |
| PkrI | GCNGC | 2 cut(s) | 60, 173 |
| PleI | GAGTC | 3 cut(s) | 143, 429, 462 |
| PpsI | GAGTC | 3 cut(s) | 143, 429, 462 |
| PpuMI | RGGWCCY | 1 cut(s) | 372 |
| Psp5II | RGGWCCY | 1 cut(s) | 372 |
| PspN4I | GGNNCC | 2 cut(s) | 124, 374 |
| PspPI | GGNCC | 2 cut(s) | 249, 372 |
| PspPPI | RGGWCCY | 1 cut(s) | 372 |
| RseI | CAYNNNNRTG | 1 cut(s) | 163 |
| SaqAI | TTAA | 2 cut(s) | 9, 240 |
| SatI | GCNGC | 2 cut(s) | 59, 172 |
| Sau96I | GGNCC | 2 cut(s) | 249, 372 |
| SchI | GAGTC | 3 cut(s) | 143, 430, 463 |
| SetI | ASST | 6 cut(s) | 128, 197, 353, 374, 418, 476 |
| SfaNI | GCATC | 2 cut(s) | 183, 292 |
| SinI | GGWCC | 1 cut(s) | 372 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 163 |
| SmlI | CTYRAG | 1 cut(s) | 306 |
| SmoI | CTYRAG | 1 cut(s) | 306 |
| SpeI | ACTAGT | 1 cut(s) | 359 |
| SphI | GCATGC | 1 cut(s) | 235 |
| Sse9I | AATT | 4 cut(s) | 93, 140, 256, 268 |
| SsiI | CCGC | 2 cut(s) | 58, 311 |
| SspMI | CTAG | 2 cut(s) | 62, 360 |
| StyI | CCWWGG | 1 cut(s) | 449 |
| TaaI | ACNGT | 1 cut(s) | 481 |
| TaqI | TCGA | 1 cut(s) | 106 |
| TasI | AATT | 4 cut(s) | 93, 140, 256, 268 |
| TauI | GCSGC | 1 cut(s) | 61 |
| TfiI | GAWTC | 1 cut(s) | 445 |
| Tru1I | TTAA | 2 cut(s) | 9, 240 |
| Tru9I | TTAA | 2 cut(s) | 9, 240 |
| TscAI | CASTG | 2 cut(s) | 187, 303 |
| TseI | GCWGC | 1 cut(s) | 171 |
| TspDTI | ATGAA | 1 cut(s) | 147 |
| TspRI | CASTG | 2 cut(s) | 187, 303 |
| VpaK11BI | GGWCC | 1 cut(s) | 372 |
| XapI | RAATTY | 1 cut(s) | 93 |
| XceI | RCATGY | 1 cut(s) | 235 |
| XspI | CTAG | 2 cut(s) | 62, 360 |