Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 396 |
| AccBSI | CCGCTC | 1 cut(s) | 410 |
| AccI | GTMKAC | 1 cut(s) | 388 |
| AccIII | TCCGGA | 1 cut(s) | 262 |
| AciI | CCGC | 2 cut(s) | 80, 410 |
| AcoI | YGGCCR | 1 cut(s) | 357 |
| AcsI | RAATTY | 1 cut(s) | 711 |
| AcyI | GRCGYC | 1 cut(s) | 22 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 553, 567 |
| AgeI | ACCGGT | 1 cut(s) | 526 |
| AgsI | TTSAA | 3 cut(s) | 64, 507, 668 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 310 |
| AjnI | CCWGG | 1 cut(s) | 37 |
| AluBI | AGCT | 3 cut(s) | 8, 467, 578 |
| AluI | AGCT | 3 cut(s) | 8, 467, 578 |
| Alw26I | GTCTC | 1 cut(s) | 241 |
| Ama87I | CYCGRG | 1 cut(s) | 363 |
| Aor13HI | TCCGGA | 1 cut(s) | 262 |
| AoxI | GGCC | 5 cut(s) | 116, 152, 257, 357, 537 |
| ApoI | RAATTY | 1 cut(s) | 711 |
| AseI | ATTAAT | 1 cut(s) | 297 |
| AsiGI | ACCGGT | 1 cut(s) | 526 |
| AspS9I | GGNCC | 2 cut(s) | 515, 524 |
| AsuHPI | GGTGA | 1 cut(s) | 644 |
| AsuNHI | GCTAGC | 1 cut(s) | 4 |
| AvaI | CYCGRG | 1 cut(s) | 363 |
| AvaII | GGWCC | 2 cut(s) | 515, 524 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 339, 372 |
| BalI | TGGCCA | 1 cut(s) | 359 |
| BbsI | GAAGAC | 2 cut(s) | 17, 52 |
| BccI | CCATC | 1 cut(s) | 127 |
| BceAI | ACGGC | 2 cut(s) | 53, 114 |
| BciT130I | CCWGG | 1 cut(s) | 39 |
| BciVI | GTATCC | 1 cut(s) | 259 |
| BcoDI | GTCTC | 1 cut(s) | 241 |
| BfaI | CTAG | 2 cut(s) | 5, 150 |
| BfuI | GTATCC | 1 cut(s) | 259 |
| BisI | GCNGC | 1 cut(s) | 411 |
| BlpI | GCTNAGC | 1 cut(s) | 9 |
| BlsI | GCNGC | 1 cut(s) | 412 |
| Bme1390I | CCNGG | 1 cut(s) | 39 |
| Bme18I | GGWCC | 2 cut(s) | 515, 524 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 310 |
| BmeT110I | CYCGRG | 1 cut(s) | 363 |
| BmgT120I | GGNCC | 2 cut(s) | 515, 524 |
| BmrFI | CCNGG | 1 cut(s) | 39 |
| BmrI | ACTGGG | 1 cut(s) | 543 |
| BmtI | GCTAGC | 1 cut(s) | 8 |
| BmuI | ACTGGG | 1 cut(s) | 543 |
| BpiI | GAAGAC | 2 cut(s) | 17, 52 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 9 |
| BpuEI | CTTGAG | 1 cut(s) | 39 |
| BsaHI | GRCGYC | 1 cut(s) | 22 |
| BsaJI | CCNNGG | 1 cut(s) | 618 |
| BsaWI | WCCGGW | 3 cut(s) | 262, 526, 629 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 553, 567 |
| Bse118I | RCCGGY | 2 cut(s) | 154, 526 |
| Bse1I | ACTGG | 1 cut(s) | 549 |
| BseAI | TCCGGA | 1 cut(s) | 262 |
| BseBI | CCWGG | 1 cut(s) | 39 |
| BseDI | CCNNGG | 1 cut(s) | 618 |
| BseGI | GGATG | 1 cut(s) | 34 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 553, 567 |
| BseMII | CTCAG | 1 cut(s) | 231 |
| BseNI | ACTGG | 1 cut(s) | 549 |
| BseRI | GAGGAG | 2 cut(s) | 148, 581 |
| BshFI | GGCC | 5 cut(s) | 118, 154, 259, 359, 539 |
| BshTI | ACCGGT | 1 cut(s) | 526 |
| BsiHKCI | CYCGRG | 1 cut(s) | 363 |
| BsiSI | CCGG | 4 cut(s) | 155, 263, 527, 630 |
| BslFI | GGGAC | 2 cut(s) | 227, 530 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 553, 567 |
| BsmAI | GTCTC | 1 cut(s) | 241 |
| BsmFI | GGGAC | 2 cut(s) | 227, 530 |
| BsnI | GGCC | 5 cut(s) | 118, 154, 259, 359, 539 |
| BsoBI | CYCGRG | 1 cut(s) | 363 |
| Bsp13I | TCCGGA | 1 cut(s) | 262 |
| Bsp143I | GATC | 1 cut(s) | 634 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 9 |
| BspACI | CCGC | 2 cut(s) | 80, 410 |
| BspANI | GGCC | 5 cut(s) | 118, 154, 259, 359, 539 |
| BspCNI | CTCAG | 1 cut(s) | 230 |
| BspEI | TCCGGA | 1 cut(s) | 262 |
| BspHI | TCATGA | 1 cut(s) | 469 |
| BspOI | GCTAGC | 1 cut(s) | 8 |
| BsrBI | CCGCTC | 1 cut(s) | 410 |
| BsrFI | RCCGGY | 2 cut(s) | 154, 526 |
| BsrI | ACTGG | 1 cut(s) | 549 |
| BssAI | RCCGGY | 2 cut(s) | 154, 526 |
| BssECI | CCNNGG | 1 cut(s) | 618 |
| BssMI | GATC | 1 cut(s) | 634 |
| BssNI | GRCGYC | 1 cut(s) | 22 |
| BssT1I | CCWWGG | 1 cut(s) | 618 |
| Bst2UI | CCWGG | 1 cut(s) | 39 |
| Bst4CI | ACNGT | 3 cut(s) | 271, 644, 673 |
| Bst6I | CTCTTC | 1 cut(s) | 508 |
| BstACI | GRCGYC | 1 cut(s) | 22 |
| BstC8I | GCNNGC | 3 cut(s) | 6, 165, 576 |
| BstDEI | CTNAG | 3 cut(s) | 9, 217, 383 |
| BstF5I | GGATG | 1 cut(s) | 34 |
| BstKTI | GATC | 1 cut(s) | 637 |
| BstMAI | GTCTC | 1 cut(s) | 241 |
| BstMBI | GATC | 1 cut(s) | 634 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 10, 19, 160 |
| BstNI | CCWGG | 1 cut(s) | 39 |
| BstSCI | CCNGG | 1 cut(s) | 37 |
| BstV2I | GAAGAC | 2 cut(s) | 17, 52 |
| BsuI | GTATCC | 1 cut(s) | 259 |
| BsuRI | GGCC | 5 cut(s) | 118, 154, 259, 359, 539 |
| BtsCI | GGATG | 1 cut(s) | 34 |
| BtsIMutI | CAGTG | 2 cut(s) | 640, 698 |
| Cac8I | GCNNGC | 3 cut(s) | 6, 165, 576 |
| CciI | TCATGA | 1 cut(s) | 469 |
| Cfr10I | RCCGGY | 2 cut(s) | 154, 526 |
| Cfr13I | GGNCC | 2 cut(s) | 515, 524 |
| CseI | GACGC | 1 cut(s) | 11 |
| CspAI | ACCGGT | 1 cut(s) | 526 |
| CviAII | CATG | 6 cut(s) | 83, 106, 353, 395, 470, 481 |
| DdeI | CTNAG | 3 cut(s) | 9, 217, 383 |
| DpnI | GATC | 1 cut(s) | 636 |
| DpnII | GATC | 1 cut(s) | 634 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 396 |
| DriI | GACNNNNNGTC | 1 cut(s) | 310 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 396 |
| EaeI | YGGCCR | 1 cut(s) | 357 |
| Eam1104I | CTCTTC | 1 cut(s) | 508 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 310 |
| EarI | CTCTTC | 1 cut(s) | 508 |
| Eco130I | CCWWGG | 1 cut(s) | 618 |
| Eco147I | AGGCCT | 1 cut(s) | 259 |
| Eco47I | GGWCC | 2 cut(s) | 515, 524 |
| Eco88I | CYCGRG | 1 cut(s) | 363 |
| EcoRII | CCWGG | 1 cut(s) | 37 |
| EcoT14I | CCWWGG | 1 cut(s) | 618 |
| ErhI | CCWWGG | 1 cut(s) | 618 |
| FaeI | CATG | 6 cut(s) | 86, 109, 356, 398, 473, 484 |
| FaqI | GGGAC | 2 cut(s) | 227, 530 |
| FatI | CATG | 6 cut(s) | 82, 105, 352, 394, 469, 480 |
| FauNDI | CATATG | 1 cut(s) | 520 |
| FblI | GTMKAC | 1 cut(s) | 388 |
| Fnu4HI | GCNGC | 1 cut(s) | 411 |
| FokI | GGATG | 1 cut(s) | 21 |
| Fsp4HI | GCNGC | 1 cut(s) | 411 |
| FspBI | CTAG | 2 cut(s) | 5, 150 |
| GluI | GCNGC | 1 cut(s) | 411 |
| HaeIII | GGCC | 5 cut(s) | 118, 154, 259, 359, 539 |
| HapII | CCGG | 4 cut(s) | 155, 263, 527, 630 |
| HgaI | GACGC | 1 cut(s) | 11 |
| Hin1I | GRCGYC | 1 cut(s) | 22 |
| Hin1II | CATG | 6 cut(s) | 86, 109, 356, 398, 473, 484 |
| HinfI | GANTC | 4 cut(s) | 183, 215, 226, 586 |
| HpaII | CCGG | 4 cut(s) | 155, 263, 527, 630 |
| HphI | GGTGA | 1 cut(s) | 644 |
| Hpy166II | GTNNAC | 1 cut(s) | 389 |
| Hpy188I | TCNGA | 2 cut(s) | 220, 585 |
| Hpy188III | TCNNGA | 3 cut(s) | 263, 401, 470 |
| Hpy8I | GTNNAC | 1 cut(s) | 389 |
| HpyAV | CCTTC | 2 cut(s) | 240, 529 |
| HpyCH4III | ACNGT | 3 cut(s) | 271, 644, 673 |
| HpyCH4V | TGCA | 2 cut(s) | 163, 287 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 10, 19, 160 |
| HpyF3I | CTNAG | 3 cut(s) | 9, 217, 383 |
| Hsp92I | GRCGYC | 1 cut(s) | 22 |
| Hsp92II | CATG | 6 cut(s) | 86, 109, 356, 398, 473, 484 |
| Kpn2I | TCCGGA | 1 cut(s) | 262 |
| Kzo9I | GATC | 1 cut(s) | 634 |
| LmnI | GCTCC | 1 cut(s) | 659 |
| LpnPI | CCDG | 9 cut(s) | 24, 51, 149, 168, 276, 386, 540, 562, 643 |
| MaeI | CTAG | 2 cut(s) | 5, 150 |
| MaeIII | GTNAC | 1 cut(s) | 623 |
| MalI | GATC | 1 cut(s) | 636 |
| MbiI | CCGCTC | 1 cut(s) | 410 |
| MboI | GATC | 1 cut(s) | 634 |
| MboII | GAAGA | 5 cut(s) | 17, 52, 430, 495, 629 |
| MfeI | CAATTG | 1 cut(s) | 507 |
| MlsI | TGGCCA | 1 cut(s) | 359 |
| MluCI | AATT | 3 cut(s) | 419, 507, 711 |
| MluNI | TGGCCA | 1 cut(s) | 359 |
| MlyI | GAGTC | 1 cut(s) | 209 |
| MnlI | CCTC | 8 cut(s) | 108, 126, 139, 270, 295, 425, 511, 602 |
| Mox20I | TGGCCA | 1 cut(s) | 359 |
| MroI | TCCGGA | 1 cut(s) | 262 |
| MscI | TGGCCA | 1 cut(s) | 359 |
| MseI | TTAA | 1 cut(s) | 297 |
| Msp20I | TGGCCA | 1 cut(s) | 359 |
| MspI | CCGG | 4 cut(s) | 155, 263, 527, 630 |
| MspR9I | CCNGG | 1 cut(s) | 39 |
| MunI | CAATTG | 1 cut(s) | 507 |
| MvaI | CCWGG | 1 cut(s) | 39 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 10, 19, 160 |
| NdeI | CATATG | 1 cut(s) | 520 |
| NdeII | GATC | 1 cut(s) | 634 |
| NheI | GCTAGC | 1 cut(s) | 4 |
| NlaIII | CATG | 6 cut(s) | 86, 109, 356, 398, 473, 484 |
| PaeR7I | CTCGAG | 1 cut(s) | 363 |
| PagI | TCATGA | 1 cut(s) | 469 |
| PceI | AGGCCT | 1 cut(s) | 259 |
| PfeI | GAWTC | 3 cut(s) | 183, 226, 586 |
| PinAI | ACCGGT | 1 cut(s) | 526 |
| PkrI | GCNGC | 1 cut(s) | 412 |
| PleI | GAGTC | 1 cut(s) | 209 |
| PpsI | GAGTC | 1 cut(s) | 209 |
| PshBI | ATTAAT | 1 cut(s) | 297 |
| Psp6I | CCWGG | 1 cut(s) | 37 |
| PspGI | CCWGG | 1 cut(s) | 37 |
| PspPI | GGNCC | 2 cut(s) | 515, 524 |
| PspXI | VCTCGAGB | 1 cut(s) | 363 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 79, 111 |
| SaqAI | TTAA | 1 cut(s) | 297 |
| SatI | GCNGC | 1 cut(s) | 411 |
| Sau3AI | GATC | 1 cut(s) | 634 |
| Sau96I | GGNCC | 2 cut(s) | 515, 524 |
| SchI | GAGTC | 1 cut(s) | 209 |
| ScrFI | CCNGG | 1 cut(s) | 39 |
| SetI | ASST | 6 cut(s) | 10, 19, 436, 469, 558, 580 |
| Sfr274I | CTCGAG | 1 cut(s) | 363 |
| SinI | GGWCC | 2 cut(s) | 515, 524 |
| SlaI | CTCGAG | 1 cut(s) | 363 |
| SmlI | CTYRAG | 2 cut(s) | 54, 363 |
| SmoI | CTYRAG | 2 cut(s) | 54, 363 |
| Sse9I | AATT | 3 cut(s) | 419, 507, 711 |
| SseBI | AGGCCT | 1 cut(s) | 259 |
| SsiI | CCGC | 2 cut(s) | 80, 410 |
| SspMI | CTAG | 2 cut(s) | 5, 150 |
| StuI | AGGCCT | 1 cut(s) | 259 |
| StyD4I | CCNGG | 1 cut(s) | 37 |
| StyI | CCWWGG | 1 cut(s) | 618 |
| TaaI | ACNGT | 3 cut(s) | 271, 644, 673 |
| TaqI | TCGA | 1 cut(s) | 364 |
| TasI | AATT | 3 cut(s) | 419, 507, 711 |
| TauI | GCSGC | 1 cut(s) | 413 |
| TfiI | GAWTC | 3 cut(s) | 183, 226, 586 |
| Tru1I | TTAA | 1 cut(s) | 297 |
| Tru9I | TTAA | 1 cut(s) | 297 |
| TscAI | CASTG | 2 cut(s) | 647, 698 |
| TspDTI | ATGAA | 3 cut(s) | 323, 336, 383 |
| TspRI | CASTG | 2 cut(s) | 647, 698 |
| VpaK11BI | GGWCC | 2 cut(s) | 515, 524 |
| VspI | ATTAAT | 1 cut(s) | 297 |
| XapI | RAATTY | 1 cut(s) | 711 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 126 |
| XhoI | CTCGAG | 1 cut(s) | 363 |
| XmiI | GTMKAC | 1 cut(s) | 388 |
| XspI | CTAG | 2 cut(s) | 5, 150 |