Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 674 |
| Acc36I | ACCTGC | 1 cut(s) | 674 |
| AciI | CCGC | 2 cut(s) | 617, 969 |
| AclWI | GGATC | 1 cut(s) | 986 |
| AcsI | RAATTY | 1 cut(s) | 27 |
| AcuI | CTGAAG | 1 cut(s) | 76 |
| AfaI | GTAC | 2 cut(s) | 604, 675 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 975 |
| AflIII | ACRYGT | 2 cut(s) | 151, 670 |
| AgsI | TTSAA | 2 cut(s) | 149, 793 |
| AjnI | CCWGG | 2 cut(s) | 678, 1075 |
| AluBI | AGCT | 4 cut(s) | 131, 271, 767, 1067 |
| AluI | AGCT | 4 cut(s) | 131, 271, 767, 1067 |
| AlwI | GGATC | 1 cut(s) | 986 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 803 |
| Ama87I | CYCGRG | 1 cut(s) | 1128 |
| AoxI | GGCC | 3 cut(s) | 582, 773, 841 |
| ApoI | RAATTY | 1 cut(s) | 27 |
| AseI | ATTAAT | 2 cut(s) | 66, 251 |
| AspS9I | GGNCC | 1 cut(s) | 774 |
| AsuHPI | GGTGA | 3 cut(s) | 419, 624, 638 |
| AsuNHI | GCTAGC | 2 cut(s) | 284, 520 |
| AvaI | CYCGRG | 1 cut(s) | 1128 |
| BbsI | GAAGAC | 1 cut(s) | 82 |
| BccI | CCATC | 4 cut(s) | 188, 528, 701, 732 |
| BceAI | ACGGC | 1 cut(s) | 788 |
| BciT130I | CCWGG | 2 cut(s) | 680, 1077 |
| BfaI | CTAG | 5 cut(s) | 285, 521, 570, 764, 825 |
| BfuAI | ACCTGC | 1 cut(s) | 674 |
| Bme1390I | CCNGG | 2 cut(s) | 680, 1077 |
| BmeT110I | CYCGRG | 1 cut(s) | 1128 |
| BmgT120I | GGNCC | 1 cut(s) | 774 |
| BmiI | GGNNCC | 1 cut(s) | 776 |
| BmrFI | CCNGG | 2 cut(s) | 680, 1077 |
| BmsI | GCATC | 2 cut(s) | 401, 1012 |
| BmtI | GCTAGC | 2 cut(s) | 288, 524 |
| BpiI | GAAGAC | 1 cut(s) | 82 |
| BpmI | CTGGAG | 2 cut(s) | 101, 662 |
| BsaBI | GATNNNNATC | 2 cut(s) | 171, 378 |
| BsaJI | CCNNGG | 1 cut(s) | 1075 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 660, 690, 990, 1020, 1093, 1123 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 975 |
| Bse3DI | GCAATG | 1 cut(s) | 836 |
| Bse8I | GATNNNNATC | 2 cut(s) | 171, 378 |
| BseBI | CCWGG | 2 cut(s) | 680, 1077 |
| BseDI | CCNNGG | 1 cut(s) | 1075 |
| BseGI | GGATG | 2 cut(s) | 163, 539 |
| BseJI | GATNNNNATC | 2 cut(s) | 171, 378 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 975 |
| BseMI | GCAATG | 1 cut(s) | 836 |
| BseMII | CTCAG | 1 cut(s) | 930 |
| BseRI | GAGGAG | 1 cut(s) | 454 |
| BsgI | GTGCAG | 1 cut(s) | 710 |
| Bsh1285I | CGRYCG | 1 cut(s) | 922 |
| BshFI | GGCC | 3 cut(s) | 584, 775, 843 |
| BsiEI | CGRYCG | 1 cut(s) | 922 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1128 |
| BslFI | GGGAC | 2 cut(s) | 192, 1058 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 975 |
| BsmFI | GGGAC | 2 cut(s) | 192, 1058 |
| BsmI | GAATGC | 2 cut(s) | 14, 891 |
| BsnI | GGCC | 3 cut(s) | 584, 775, 843 |
| BsoBI | CYCGRG | 1 cut(s) | 1128 |
| Bsp143I | GATC | 4 cut(s) | 200, 877, 919, 978 |
| BspACI | CCGC | 2 cut(s) | 617, 969 |
| BspANI | GGCC | 3 cut(s) | 584, 775, 843 |
| BspCNI | CTCAG | 1 cut(s) | 931 |
| BspLI | GGNNCC | 1 cut(s) | 776 |
| BspMI | ACCTGC | 1 cut(s) | 674 |
| BspOI | GCTAGC | 2 cut(s) | 288, 524 |
| BspPI | GGATC | 1 cut(s) | 986 |
| BsrDI | GCAATG | 1 cut(s) | 836 |
| BssECI | CCNNGG | 1 cut(s) | 1075 |
| BssMI | GATC | 4 cut(s) | 200, 877, 919, 978 |
| Bst2UI | CCWGG | 2 cut(s) | 680, 1077 |
| Bst4CI | ACNGT | 1 cut(s) | 799 |
| Bst6I | CTCTTC | 1 cut(s) | 71 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 218 |
| BstC8I | GCNNGC | 2 cut(s) | 286, 522 |
| BstDEI | CTNAG | 3 cut(s) | 275, 899, 939 |
| BstF5I | GGATG | 2 cut(s) | 163, 539 |
| BstKTI | GATC | 4 cut(s) | 203, 880, 922, 981 |
| BstMBI | GATC | 4 cut(s) | 200, 877, 919, 978 |
| BstMCI | CGRYCG | 1 cut(s) | 922 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 218, 521, 1103 |
| BstNI | CCWGG | 2 cut(s) | 680, 1077 |
| BstNSI | RCATGY | 1 cut(s) | 674 |
| BstSCI | CCNGG | 2 cut(s) | 678, 1075 |
| BstV2I | GAAGAC | 1 cut(s) | 82 |
| BsuRI | GGCC | 3 cut(s) | 584, 775, 843 |
| BtsCI | GGATG | 2 cut(s) | 163, 539 |
| BtsI | GCAGTG | 2 cut(s) | 12, 698 |
| BtsIMutI | CAGTG | 5 cut(s) | 12, 411, 560, 698, 804 |
| BveI | ACCTGC | 1 cut(s) | 674 |
| Cac8I | GCNNGC | 2 cut(s) | 286, 522 |
| CaiI | CAGNNNCTG | 1 cut(s) | 803 |
| Cfr13I | GGNCC | 1 cut(s) | 774 |
| Csp6I | GTAC | 2 cut(s) | 603, 674 |
| CviAII | CATG | 4 cut(s) | 164, 622, 671, 1098 |
| CviQI | GTAC | 2 cut(s) | 603, 674 |
| DdeI | CTNAG | 3 cut(s) | 275, 899, 939 |
| DpnI | GATC | 4 cut(s) | 202, 879, 921, 980 |
| DpnII | GATC | 4 cut(s) | 200, 877, 919, 978 |
| DraI | TTTAAA | 1 cut(s) | 490 |
| Eam1104I | CTCTTC | 1 cut(s) | 71 |
| EarI | CTCTTC | 1 cut(s) | 71 |
| Eco57I | CTGAAG | 1 cut(s) | 76 |
| Eco88I | CYCGRG | 1 cut(s) | 1128 |
| EcoRII | CCWGG | 2 cut(s) | 678, 1075 |
| FaeI | CATG | 4 cut(s) | 167, 625, 674, 1101 |
| FaqI | GGGAC | 2 cut(s) | 192, 1058 |
| FatI | CATG | 4 cut(s) | 163, 621, 670, 1097 |
| FauNDI | CATATG | 1 cut(s) | 52 |
| FokI | GGATG | 2 cut(s) | 170, 546 |
| FspBI | CTAG | 5 cut(s) | 285, 521, 570, 764, 825 |
| GsuI | CTGGAG | 2 cut(s) | 101, 662 |
| HaeIII | GGCC | 3 cut(s) | 584, 775, 843 |
| Hin1II | CATG | 4 cut(s) | 167, 625, 674, 1101 |
| HincII | GTYRAC | 1 cut(s) | 1017 |
| HindII | GTYRAC | 1 cut(s) | 1017 |
| HinfI | GANTC | 3 cut(s) | 112, 629, 934 |
| HphI | GGTGA | 3 cut(s) | 419, 624, 638 |
| Hpy166II | GTNNAC | 2 cut(s) | 912, 1017 |
| Hpy188I | TCNGA | 2 cut(s) | 75, 462 |
| Hpy188III | TCNNGA | 3 cut(s) | 32, 118, 938 |
| Hpy8I | GTNNAC | 2 cut(s) | 912, 1017 |
| HpyAV | CCTTC | 1 cut(s) | 645 |
| HpyCH4III | ACNGT | 1 cut(s) | 799 |
| HpyCH4IV | ACGT | 1 cut(s) | 151 |
| HpyCH4V | TGCA | 8 cut(s) | 12, 143, 221, 392, 691, 875, 891, 1097 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 218, 521, 1103 |
| HpyF3I | CTNAG | 3 cut(s) | 275, 899, 939 |
| HpySE526I | ACGT | 1 cut(s) | 151 |
| Hsp92II | CATG | 4 cut(s) | 167, 625, 674, 1101 |
| Kzo9I | GATC | 4 cut(s) | 200, 877, 919, 978 |
| LmnI | GCTCC | 1 cut(s) | 276 |
| LweI | GCATC | 2 cut(s) | 401, 1012 |
| MaeI | CTAG | 5 cut(s) | 285, 521, 570, 764, 825 |
| MaeII | ACGT | 1 cut(s) | 151 |
| MaeIII | GTNAC | 2 cut(s) | 407, 626 |
| MalI | GATC | 4 cut(s) | 202, 879, 921, 980 |
| MboI | GATC | 4 cut(s) | 200, 877, 919, 978 |
| MboII | GAAGA | 5 cut(s) | 17, 82, 88, 436, 709 |
| MluCI | AATT | 6 cut(s) | 27, 67, 248, 318, 540, 1043 |
| MlyI | GAGTC | 2 cut(s) | 623, 943 |
| MmeI | TCCRAC | 1 cut(s) | 239 |
| MnlI | CCTC | 8 cut(s) | 195, 432, 466, 470, 564, 793, 906, 1044 |
| MseI | TTAA | 6 cut(s) | 66, 228, 251, 303, 489, 963 |
| MspR9I | CCNGG | 2 cut(s) | 680, 1077 |
| Mva1269I | GAATGC | 2 cut(s) | 14, 891 |
| MvaI | CCWGG | 2 cut(s) | 680, 1077 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 218, 521, 1103 |
| NdeI | CATATG | 1 cut(s) | 52 |
| NdeII | GATC | 4 cut(s) | 200, 877, 919, 978 |
| NheI | GCTAGC | 2 cut(s) | 284, 520 |
| NlaIII | CATG | 4 cut(s) | 167, 625, 674, 1101 |
| NlaIV | GGNNCC | 1 cut(s) | 776 |
| NmuCI | GTSAC | 2 cut(s) | 407, 626 |
| NspI | RCATGY | 1 cut(s) | 674 |
| PaqCI | CACCTGC | 1 cut(s) | 674 |
| PciI | ACATGT | 1 cut(s) | 670 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 196 |
| PctI | GAATGC | 2 cut(s) | 14, 891 |
| PfeI | GAWTC | 1 cut(s) | 112 |
| Ple19I | CGATCG | 1 cut(s) | 922 |
| PleI | GAGTC | 2 cut(s) | 623, 942 |
| PpsI | GAGTC | 2 cut(s) | 623, 942 |
| PscI | ACATGT | 1 cut(s) | 670 |
| PshBI | ATTAAT | 2 cut(s) | 66, 251 |
| Psp6I | CCWGG | 2 cut(s) | 678, 1075 |
| PspGI | CCWGG | 2 cut(s) | 678, 1075 |
| PspN4I | GGNNCC | 1 cut(s) | 776 |
| PspPI | GGNCC | 1 cut(s) | 774 |
| PstNI | CAGNNNCTG | 1 cut(s) | 803 |
| PvuI | CGATCG | 1 cut(s) | 922 |
| RsaI | GTAC | 2 cut(s) | 604, 675 |
| RsaNI | GTAC | 2 cut(s) | 603, 674 |
| SaqAI | TTAA | 6 cut(s) | 66, 228, 251, 303, 489, 963 |
| Sau3AI | GATC | 4 cut(s) | 200, 877, 919, 978 |
| Sau96I | GGNCC | 1 cut(s) | 774 |
| SchI | GAGTC | 2 cut(s) | 623, 943 |
| ScrFI | CCNGG | 2 cut(s) | 680, 1077 |
| SfaNI | GCATC | 2 cut(s) | 401, 1012 |
| Sse9I | AATT | 6 cut(s) | 27, 67, 248, 318, 540, 1043 |
| SsiI | CCGC | 2 cut(s) | 617, 969 |
| SspI | AATATT | 2 cut(s) | 103, 511 |
| SspMI | CTAG | 5 cut(s) | 285, 521, 570, 764, 825 |
| StyD4I | CCNGG | 2 cut(s) | 678, 1075 |
| TaaI | ACNGT | 1 cut(s) | 799 |
| TaiI | ACGT | 1 cut(s) | 154 |
| TaqI | TCGA | 1 cut(s) | 199 |
| TasI | AATT | 6 cut(s) | 27, 67, 248, 318, 540, 1043 |
| TatI | WGTACW | 1 cut(s) | 673 |
| TfiI | GAWTC | 1 cut(s) | 112 |
| Tru1I | TTAA | 6 cut(s) | 66, 228, 251, 303, 489, 963 |
| Tru9I | TTAA | 6 cut(s) | 66, 228, 251, 303, 489, 963 |
| TscAI | CASTG | 5 cut(s) | 19, 418, 567, 698, 804 |
| TseFI | GTSAC | 2 cut(s) | 407, 626 |
| Tsp45I | GTSAC | 2 cut(s) | 407, 626 |
| TspDTI | ATGAA | 5 cut(s) | 174, 353, 368, 627, 831 |
| TspGWI | ACGGA | 1 cut(s) | 1004 |
| TspRI | CASTG | 5 cut(s) | 19, 418, 567, 698, 804 |
| VspI | ATTAAT | 2 cut(s) | 66, 251 |
| XapI | RAATTY | 1 cut(s) | 27 |
| XceI | RCATGY | 1 cut(s) | 674 |
| XspI | CTAG | 5 cut(s) | 285, 521, 570, 764, 825 |