ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| XS | PF03468 | 856 - 982 | 1.9e-18 | XS domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 704, 2016 |
| Acc36I | ACCTGC | 1 cut(s) | 267 |
| Acc65I | GGTACC | 1 cut(s) | 400 |
| AccB1I | GGYRCC | 2 cut(s) | 83, 400 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 692, 2401, 2970 |
| AccI | GTMKAC | 2 cut(s) | 757, 1862 |
| AccII | CGCG | 1 cut(s) | 745 |
| AciI | CCGC | 8 cut(s) | 167, 243, 271, 274, 296, 367, 791, 2933 |
| AclWI | GGATC | 4 cut(s) | 624, 637, 901, 1861 |
| AcoI | YGGCCR | 3 cut(s) | 724, 2362, 3009 |
| AcsI | RAATTY | 5 cut(s) | 944, 992, 1351, 1500, 1943 |
| AcuI | CTGAAG | 2 cut(s) | 767, 1619 |
| AcyI | GRCGYC | 1 cut(s) | 267 |
| AdeI | CACNNNGTG | 1 cut(s) | 1222 |
| AfaI | GTAC | 7 cut(s) | 138, 402, 697, 1239, 1300, 2494, 2517 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 311, 692, 936, 1085, 1315, 2401, 2970 |
| AgeI | ACCGGT | 1 cut(s) | 397 |
| AgsI | TTSAA | 8 cut(s) | 28, 487, 547, 999, 1356, 1808, 2258, 2657 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 588 |
| AjiI | CACGTC | 1 cut(s) | 443 |
| AjnI | CCWGG | 5 cut(s) | 2299, 2529, 2715, 2963, 3006 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 765, 797 |
| AleI | CACNNNNGTG | 2 cut(s) | 441, 2163 |
| AluBI | AGCT | 9 cut(s) | 566, 921, 1198, 1687, 2213, 2370, 2432, 2552, 2660 |
| AluI | AGCT | 9 cut(s) | 566, 921, 1198, 1687, 2213, 2370, 2432, 2552, 2660 |
| Alw21I | GWGCWC | 1 cut(s) | 2479 |
| Alw26I | GTCTC | 5 cut(s) | 118, 1068, 1674, 1974, 2883 |
| AlwI | GGATC | 4 cut(s) | 624, 637, 901, 1861 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 2216, 2970, 3007 |
| Ama87I | CYCGRG | 1 cut(s) | 1071 |
| AoxI | GGCC | 7 cut(s) | 724, 1052, 1885, 1905, 2362, 2582, 3009 |
| ApeKI | GCWGC | 6 cut(s) | 37, 747, 970, 1535, 1963, 2210 |
| ApoI | RAATTY | 5 cut(s) | 944, 992, 1351, 1500, 1943 |
| AseI | ATTAAT | 1 cut(s) | 1035 |
| AsiGI | ACCGGT | 1 cut(s) | 397 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 780, 944, 2381 |
| Asp718I | GGTACC | 1 cut(s) | 400 |
| AspLEI | GCGC | 3 cut(s) | 747, 1365, 1540 |
| AspS9I | GGNCC | 4 cut(s) | 793, 1885, 1906, 3004 |
| AsuC2I | CCSGG | 2 cut(s) | 289, 1909 |
| AsuII | TTCGAA | 1 cut(s) | 75 |
| AsuNHI | GCTAGC | 1 cut(s) | 917 |
| AvaI | CYCGRG | 1 cut(s) | 1071 |
| AvaII | GGWCC | 2 cut(s) | 793, 3004 |
| AxyI | CCTNAGG | 1 cut(s) | 129 |
| BalI | TGGCCA | 2 cut(s) | 726, 3011 |
| BamHI | GGATCC | 1 cut(s) | 629 |
| BanI | GGYRCC | 2 cut(s) | 83, 400 |
| BanII | GRGCYC | 1 cut(s) | 167 |
| BauI | CACGAG | 1 cut(s) | 1233 |
| Bbv12I | GWGCWC | 1 cut(s) | 2479 |
| BbvI | GCAGC | 6 cut(s) | 49, 759, 982, 1547, 1950, 2222 |
| BccI | CCATC | 8 cut(s) | 257, 350, 742, 863, 1210, 1258, 1583, 2230 |
| BceAI | ACGGC | 1 cut(s) | 1951 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 65, 99 |
| BciT130I | CCWGG | 5 cut(s) | 2301, 2531, 2717, 2965, 3008 |
| BciVI | GTATCC | 1 cut(s) | 1763 |
| BclI | TGATCA | 3 cut(s) | 1207, 1273, 2731 |
| BcnI | CCSGG | 2 cut(s) | 289, 1909 |
| BcoDI | GTCTC | 5 cut(s) | 118, 1068, 1674, 1974, 2883 |
| BfaI | CTAG | 8 cut(s) | 918, 1128, 1296, 1764, 1797, 1869, 2147, 2270 |
| BfmI | CTRYAG | 1 cut(s) | 2208 |
| BfuAI | ACCTGC | 1 cut(s) | 267 |
| BfuI | GTATCC | 1 cut(s) | 1763 |
| BglII | AGATCT | 1 cut(s) | 1292 |
| BisI | GCNGC | 7 cut(s) | 38, 274, 748, 971, 1536, 1964, 2211 |
| BlsI | GCNGC | 7 cut(s) | 39, 275, 749, 972, 1537, 1965, 2212 |
| BmcAI | AGTACT | 2 cut(s) | 2494, 2517 |
| Bme1390I | CCNGG | 7 cut(s) | 289, 1909, 2301, 2531, 2717, 2965, 3008 |
| Bme18I | GGWCC | 2 cut(s) | 793, 3004 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 588 |
| BmeT110I | CYCGRG | 1 cut(s) | 1071 |
| BmgBI | CACGTC | 1 cut(s) | 443 |
| BmgT120I | GGNCC | 4 cut(s) | 793, 1885, 1906, 3004 |
| BmiI | GGNNCC | 5 cut(s) | 85, 402, 508, 631, 2526 |
| BmrFI | CCNGG | 7 cut(s) | 289, 1909, 2301, 2531, 2717, 2965, 3008 |
| BmrI | ACTGGG | 1 cut(s) | 2781 |
| BmsI | GCATC | 9 cut(s) | 422, 1215, 1237, 1448, 1802, 1958, 1978, 2167, 2361 |
| BmtI | GCTAGC | 1 cut(s) | 921 |
| BmuI | ACTGGG | 1 cut(s) | 2781 |
| BpmI | CTGGAG | 1 cut(s) | 2992 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2217 |
| Bpu14I | TTCGAA | 1 cut(s) | 75 |
| BpuEI | CTTGAG | 3 cut(s) | 1153, 1956, 2684 |
| BpuMI | CCSGG | 2 cut(s) | 289, 1909 |
| BsaBI | GATNNNNATC | 3 cut(s) | 76, 957, 2142 |
| BsaHI | GRCGYC | 1 cut(s) | 267 |
| BsaI | GGTCTC | 2 cut(s) | 118, 1068 |
| BsaJI | CCNNGG | 9 cut(s) | 8, 691, 2037, 2158, 2299, 2529, 2541, 2716, 2821 |
| BsaWI | WCCGGW | 3 cut(s) | 80, 397, 2587 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2880, 2910 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 311, 692, 936, 1085, 1315, 2401, 2970 |
| Bse118I | RCCGGY | 2 cut(s) | 397, 1054 |
| Bse1I | ACTGG | 4 cut(s) | 818, 1933, 2776, 2975 |
| Bse21I | CCTNAGG | 1 cut(s) | 129 |
| Bse8I | GATNNNNATC | 3 cut(s) | 76, 957, 2142 |
| BseBI | CCWGG | 5 cut(s) | 2301, 2531, 2717, 2965, 3008 |
| BseDI | CCNNGG | 9 cut(s) | 8, 691, 2037, 2158, 2299, 2529, 2541, 2716, 2821 |
| BseGI | GGATG | 5 cut(s) | 284, 361, 1228, 1269, 2158 |
| BseJI | GATNNNNATC | 3 cut(s) | 76, 957, 2142 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 311, 692, 936, 1085, 1315, 2401, 2970 |
| BseMII | CTCAG | 6 cut(s) | 120, 1326, 2016, 2208, 2226, 2573 |
| BseNI | ACTGG | 4 cut(s) | 818, 1933, 2776, 2975 |
| BseXI | GCAGC | 6 cut(s) | 49, 759, 982, 1547, 1950, 2222 |
| BseYI | CCCAGC | 1 cut(s) | 2336 |
| BsgI | GTGCAG | 1 cut(s) | 1554 |
| Bsh1236I | CGCG | 1 cut(s) | 745 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1192 |
| BshFI | GGCC | 7 cut(s) | 726, 1054, 1887, 1907, 2364, 2584, 3011 |
| BshNI | GGYRCC | 2 cut(s) | 83, 400 |
| BshTI | ACCGGT | 1 cut(s) | 397 |
| BsiEI | CGRYCG | 1 cut(s) | 1192 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2479 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1071 |
| BsiSI | CCGG | 8 cut(s) | 44, 81, 288, 398, 410, 1055, 1909, 2588 |
| BslFI | GGGAC | 4 cut(s) | 45, 595, 2353, 2469 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 311, 692, 936, 1085, 1315, 2401, 2970 |
| BsmAI | GTCTC | 5 cut(s) | 118, 1068, 1674, 1974, 2883 |
| BsmBI | CGTCTC | 1 cut(s) | 1974 |
| BsmFI | GGGAC | 4 cut(s) | 45, 595, 2353, 2469 |
| BsmI | GAATGC | 4 cut(s) | 1671, 1795, 2788, 2886 |
| BsnI | GGCC | 7 cut(s) | 726, 1054, 1887, 1907, 2364, 2584, 3011 |
| Bso31I | GGTCTC | 2 cut(s) | 118, 1068 |
| BsoBI | CYCGRG | 1 cut(s) | 1071 |
| Bsp119I | TTCGAA | 1 cut(s) | 75 |
| Bsp1286I | GDGCHC | 2 cut(s) | 167, 2479 |
| BspACI | CCGC | 8 cut(s) | 167, 243, 271, 274, 296, 367, 791, 2933 |
| BspANI | GGCC | 7 cut(s) | 726, 1054, 1887, 1907, 2364, 2584, 3011 |
| BspCNI | CTCAG | 6 cut(s) | 121, 1327, 2015, 2209, 2227, 2572 |
| BspFNI | CGCG | 1 cut(s) | 745 |
| BspLI | GGNNCC | 5 cut(s) | 85, 402, 508, 631, 2526 |
| BspMAI | CTGCAG | 1 cut(s) | 2212 |
| BspMI | ACCTGC | 1 cut(s) | 267 |
| BspOI | GCTAGC | 1 cut(s) | 921 |
| BspPI | GGATC | 4 cut(s) | 624, 637, 901, 1861 |
| BspQI | GCTCTTC | 1 cut(s) | 1734 |
| BspT104I | TTCGAA | 1 cut(s) | 75 |
| BspT107I | GGYRCC | 2 cut(s) | 83, 400 |
| BspTNI | GGTCTC | 2 cut(s) | 118, 1068 |
| BsrFI | RCCGGY | 2 cut(s) | 397, 1054 |
| BsrI | ACTGG | 4 cut(s) | 818, 1933, 2776, 2975 |
| BssAI | RCCGGY | 2 cut(s) | 397, 1054 |
| BssECI | CCNNGG | 9 cut(s) | 8, 691, 2037, 2158, 2299, 2529, 2541, 2716, 2821 |
| BssNAI | GTATAC | 2 cut(s) | 758, 1863 |
| BssNI | GRCGYC | 1 cut(s) | 267 |
| BssSI | CACGAG | 1 cut(s) | 1233 |
| BssT1I | CCWWGG | 3 cut(s) | 691, 2037, 2541 |
| Bst1107I | GTATAC | 2 cut(s) | 758, 1863 |
| Bst2BI | CACGAG | 1 cut(s) | 1233 |
| Bst2UI | CCWGG | 5 cut(s) | 2301, 2531, 2717, 2965, 3008 |
| Bst4CI | ACNGT | 9 cut(s) | 661, 700, 797, 852, 1285, 1617, 2497, 2822, 2894 |
| Bst6I | CTCTTC | 3 cut(s) | 1734, 1824, 2123 |
| BstACI | GRCGYC | 1 cut(s) | 267 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 976, 2474 |
| BstBI | TTCGAA | 1 cut(s) | 75 |
| BstC8I | GCNNGC | 6 cut(s) | 167, 230, 919, 1478, 2727, 2844 |
| BstDEI | CTNAG | 8 cut(s) | 129, 1335, 2002, 2217, 2235, 2559, 2675, 2941 |
| BstDSI | CCRYGG | 2 cut(s) | 2158, 2821 |
| BstEII | GGTNACC | 2 cut(s) | 291, 2042 |
| BstF5I | GGATG | 5 cut(s) | 284, 361, 1228, 1269, 2158 |
| BstFNI | CGCG | 1 cut(s) | 745 |
| BstHHI | GCGC | 3 cut(s) | 747, 1365, 1540 |
| BstMAI | GTCTC | 5 cut(s) | 118, 1068, 1674, 1974, 2883 |
| BstMCI | CGRYCG | 1 cut(s) | 1192 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 249, 273, 970, 976, 1369, 2270, 2474, 2666 |
| BstNI | CCWGG | 5 cut(s) | 2301, 2531, 2717, 2965, 3008 |
| BstNSI | RCATGY | 2 cut(s) | 1480, 2414 |
| BstPI | GGTNACC | 2 cut(s) | 291, 2042 |
| BstSCI | CCNGG | 7 cut(s) | 287, 1907, 2299, 2529, 2715, 2963, 3006 |
| BstSFI | CTRYAG | 1 cut(s) | 2208 |
| BstUI | CGCG | 1 cut(s) | 745 |
| BstV1I | GCAGC | 6 cut(s) | 49, 759, 982, 1547, 1950, 2222 |
| BstX2I | RGATCY | 4 cut(s) | 629, 893, 1292, 1853 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2054 |
| BstYI | RGATCY | 4 cut(s) | 629, 893, 1292, 1853 |
| BstZ17I | GTATAC | 2 cut(s) | 758, 1863 |
| Bsu36I | CCTNAGG | 1 cut(s) | 129 |
| BsuI | GTATCC | 1 cut(s) | 1763 |
| BsuRI | GGCC | 7 cut(s) | 726, 1054, 1887, 1907, 2364, 2584, 3011 |
| BtgI | CCRYGG | 2 cut(s) | 2158, 2821 |
| BtgZI | GCGATG | 1 cut(s) | 1506 |
| BtrI | CACGTC | 1 cut(s) | 443 |
| BtsCI | GGATG | 5 cut(s) | 284, 361, 1228, 1269, 2158 |
| BtsIMutI | CAGTG | 6 cut(s) | 657, 825, 1622, 2505, 2769, 2899 |
| BveI | ACCTGC | 1 cut(s) | 267 |
| Cac8I | GCNNGC | 6 cut(s) | 167, 230, 919, 1478, 2727, 2844 |
| CaiI | CAGNNNCTG | 3 cut(s) | 2216, 2970, 3007 |
| CfoI | GCGC | 3 cut(s) | 747, 1365, 1540 |
| Cfr10I | RCCGGY | 2 cut(s) | 397, 1054 |
| Cfr13I | GGNCC | 4 cut(s) | 793, 1885, 1906, 3004 |
| CpoI | CGGWCCG | 1 cut(s) | 793 |
| CseI | GACGC | 2 cut(s) | 256, 1482 |
| Csp6I | GTAC | 7 cut(s) | 137, 401, 696, 1238, 1299, 2493, 2516 |
| CspAI | ACCGGT | 1 cut(s) | 397 |
| CspI | CGGWCCG | 1 cut(s) | 793 |
| CviQI | GTAC | 7 cut(s) | 137, 401, 696, 1238, 1299, 2493, 2516 |
| DdeI | CTNAG | 8 cut(s) | 129, 1335, 2002, 2217, 2235, 2559, 2675, 2941 |
| DraIII | CACNNNGTG | 1 cut(s) | 1222 |
| DriI | GACNNNNNGTC | 1 cut(s) | 588 |
| EaeI | YGGCCR | 3 cut(s) | 724, 2362, 3009 |
| Eam1104I | CTCTTC | 3 cut(s) | 1734, 1824, 2123 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 588 |
| EarI | CTCTTC | 3 cut(s) | 1734, 1824, 2123 |
| EciI | GGCGGA | 1 cut(s) | 260 |
| Eco130I | CCWWGG | 3 cut(s) | 691, 2037, 2541 |
| Eco24I | GRGCYC | 1 cut(s) | 167 |
| Eco31I | GGTCTC | 2 cut(s) | 118, 1068 |
| Eco47I | GGWCC | 2 cut(s) | 793, 3004 |
| Eco57I | CTGAAG | 2 cut(s) | 767, 1619 |
| Eco81I | CCTNAGG | 1 cut(s) | 129 |
| Eco88I | CYCGRG | 1 cut(s) | 1071 |
| Eco91I | GGTNACC | 2 cut(s) | 291, 2042 |
| EcoO109I | RGGNCCY | 1 cut(s) | 3004 |
| EcoO65I | GGTNACC | 2 cut(s) | 291, 2042 |
| EcoRI | GAATTC | 1 cut(s) | 944 |
| EcoRII | CCWGG | 5 cut(s) | 2299, 2529, 2715, 2963, 3006 |
| EcoT14I | CCWWGG | 3 cut(s) | 691, 2037, 2541 |
| EcoT22I | ATGCAT | 6 cut(s) | 1042, 1230, 1482, 1650, 1795, 2416 |
| EcoT38I | GRGCYC | 1 cut(s) | 167 |
| ErhI | CCWWGG | 3 cut(s) | 691, 2037, 2541 |
| Esp3I | CGTCTC | 1 cut(s) | 1974 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 765, 797 |
| FaqI | GGGAC | 4 cut(s) | 45, 595, 2353, 2469 |
| FauI | CCCGC | 1 cut(s) | 174 |
| FauNDI | CATATG | 2 cut(s) | 606, 975 |
| FbaI | TGATCA | 3 cut(s) | 1207, 1273, 2731 |
| FblI | GTMKAC | 2 cut(s) | 757, 1862 |
| Fnu4HI | GCNGC | 7 cut(s) | 38, 274, 748, 971, 1536, 1964, 2211 |
| FokI | GGATG | 5 cut(s) | 271, 368, 1215, 1276, 2165 |
| FriOI | GRGCYC | 1 cut(s) | 167 |
| Fsp4HI | GCNGC | 7 cut(s) | 38, 274, 748, 971, 1536, 1964, 2211 |
| FspBI | CTAG | 8 cut(s) | 918, 1128, 1296, 1764, 1797, 1869, 2147, 2270 |
| GlaI | GCGC | 3 cut(s) | 746, 1364, 1539 |
| GluI | GCNGC | 7 cut(s) | 38, 274, 748, 971, 1536, 1964, 2211 |
| GsaI | CCCAGC | 1 cut(s) | 2340 |
| GsuI | CTGGAG | 1 cut(s) | 2992 |
| HaeIII | GGCC | 7 cut(s) | 726, 1054, 1887, 1907, 2364, 2584, 3011 |
| HapII | CCGG | 8 cut(s) | 44, 81, 288, 398, 410, 1055, 1909, 2588 |
| HgaI | GACGC | 2 cut(s) | 256, 1482 |
| HhaI | GCGC | 3 cut(s) | 747, 1365, 1540 |
| Hin1I | GRCGYC | 1 cut(s) | 267 |
| Hin6I | GCGC | 3 cut(s) | 745, 1363, 1538 |
| HinP1I | GCGC | 3 cut(s) | 745, 1363, 1538 |
| HincII | GTYRAC | 3 cut(s) | 282, 741, 2089 |
| HindII | GTYRAC | 3 cut(s) | 282, 741, 2089 |
| HindIII | AAGCTT | 3 cut(s) | 1685, 2368, 2550 |
| HpaII | CCGG | 8 cut(s) | 44, 81, 288, 398, 410, 1055, 1909, 2588 |
| Hpy166II | GTNNAC | 7 cut(s) | 282, 575, 741, 758, 1863, 2089, 2158 |
| Hpy8I | GTNNAC | 7 cut(s) | 282, 575, 741, 758, 1863, 2089, 2158 |
| HpyAV | CCTTC | 8 cut(s) | 833, 990, 1488, 2275, 2371, 2557, 2635, 2986 |
| HpyCH4III | ACNGT | 9 cut(s) | 661, 700, 797, 852, 1285, 1617, 2497, 2822, 2894 |
| HpyCH4IV | ACGT | 4 cut(s) | 58, 442, 760, 2849 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 249, 273, 970, 976, 1369, 2270, 2474, 2666 |
| HpyF3I | CTNAG | 8 cut(s) | 129, 1335, 2002, 2217, 2235, 2559, 2675, 2941 |
| HpySE526I | ACGT | 4 cut(s) | 58, 442, 760, 2849 |
| Hsp92I | GRCGYC | 1 cut(s) | 267 |
| HspAI | GCGC | 3 cut(s) | 745, 1363, 1538 |
| KpnI | GGTACC | 1 cut(s) | 404 |
| Ksp22I | TGATCA | 3 cut(s) | 1207, 1273, 2731 |
| LguI | GCTCTTC | 1 cut(s) | 1734 |
| LmnI | GCTCC | 7 cut(s) | 512, 668, 926, 1311, 2218, 2902, 3022 |
| Lsp1109I | GCAGC | 6 cut(s) | 49, 759, 982, 1547, 1950, 2222 |
| LweI | GCATC | 9 cut(s) | 422, 1215, 1237, 1448, 1802, 1958, 1978, 2167, 2361 |
| MaeI | CTAG | 8 cut(s) | 918, 1128, 1296, 1764, 1797, 1869, 2147, 2270 |
| MaeII | ACGT | 4 cut(s) | 58, 442, 760, 2849 |
| MaeIII | GTNAC | 7 cut(s) | 291, 330, 653, 820, 2042, 2076, 2404 |
| MfeI | CAATTG | 1 cut(s) | 2249 |
| MflI | RGATCY | 4 cut(s) | 629, 893, 1292, 1853 |
| MhlI | GDGCHC | 2 cut(s) | 167, 2479 |
| MlsI | TGGCCA | 2 cut(s) | 726, 3011 |
| MluNI | TGGCCA | 2 cut(s) | 726, 3011 |
| MlyI | GAGTC | 1 cut(s) | 1970 |
| MmeI | TCCRAC | 1 cut(s) | 2877 |
| Mox20I | TGGCCA | 2 cut(s) | 726, 3011 |
| Mph1103I | ATGCAT | 6 cut(s) | 1042, 1230, 1482, 1650, 1795, 2416 |
| MroXI | GAANNNNTTC | 3 cut(s) | 780, 944, 2381 |
| MscI | TGGCCA | 2 cut(s) | 726, 3011 |
| MslI | CAYNNNNRTG | 5 cut(s) | 183, 237, 441, 1530, 2163 |
| Msp20I | TGGCCA | 2 cut(s) | 726, 3011 |
| MspA1I | CMGCKG | 1 cut(s) | 566 |
| MspI | CCGG | 8 cut(s) | 44, 81, 288, 398, 410, 1055, 1909, 2588 |
| MspR9I | CCNGG | 7 cut(s) | 289, 1909, 2301, 2531, 2717, 2965, 3008 |
| MunI | CAATTG | 1 cut(s) | 2249 |
| Mva1269I | GAATGC | 4 cut(s) | 1671, 1795, 2788, 2886 |
| MvaI | CCWGG | 5 cut(s) | 2301, 2531, 2717, 2965, 3008 |
| MvnI | CGCG | 1 cut(s) | 745 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 249, 273, 970, 976, 1369, 2270, 2474, 2666 |
| NciI | CCSGG | 2 cut(s) | 289, 1909 |
| NdeI | CATATG | 2 cut(s) | 606, 975 |
| NheI | GCTAGC | 1 cut(s) | 917 |
| NlaIV | GGNNCC | 5 cut(s) | 85, 402, 508, 631, 2526 |
| NmuCI | GTSAC | 6 cut(s) | 291, 330, 653, 820, 2042, 2076 |
| NsiI | ATGCAT | 6 cut(s) | 1042, 1230, 1482, 1650, 1795, 2416 |
| NspI | RCATGY | 2 cut(s) | 1480, 2414 |
| NspV | TTCGAA | 1 cut(s) | 75 |
| OliI | CACNNNNGTG | 2 cut(s) | 441, 2163 |
| PaeI | GCATGC | 1 cut(s) | 1480 |
| PaeR7I | CTCGAG | 1 cut(s) | 1071 |
| PciSI | GCTCTTC | 1 cut(s) | 1734 |
| PctI | GAATGC | 4 cut(s) | 1671, 1795, 2788, 2886 |
| PdmI | GAANNNNTTC | 3 cut(s) | 780, 944, 2381 |
| PflFI | GACNNNGTC | 1 cut(s) | 1617 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 692, 2401, 2970 |
| PinAI | ACCGGT | 1 cut(s) | 397 |
| PkrI | GCNGC | 7 cut(s) | 39, 275, 749, 972, 1537, 1965, 2212 |
| Ple19I | CGATCG | 1 cut(s) | 1192 |
| PleI | GAGTC | 1 cut(s) | 1970 |
| PpsI | GAGTC | 1 cut(s) | 1970 |
| PpuMI | RGGWCCY | 1 cut(s) | 3004 |
| PshBI | ATTAAT | 1 cut(s) | 1035 |
| PsiI | TTATAA | 2 cut(s) | 704, 2016 |
| Psp5II | RGGWCCY | 1 cut(s) | 3004 |
| Psp6I | CCWGG | 5 cut(s) | 2299, 2529, 2715, 2963, 3006 |
| PspEI | GGTNACC | 2 cut(s) | 291, 2042 |
| PspFI | CCCAGC | 1 cut(s) | 2336 |
| PspGI | CCWGG | 5 cut(s) | 2299, 2529, 2715, 2963, 3006 |
| PspN4I | GGNNCC | 5 cut(s) | 85, 402, 508, 631, 2526 |
| PspPI | GGNCC | 4 cut(s) | 793, 1885, 1906, 3004 |
| PspPPI | RGGWCCY | 1 cut(s) | 3004 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2508, 2540 |
| PstI | CTGCAG | 1 cut(s) | 2212 |
| PstNI | CAGNNNCTG | 3 cut(s) | 2216, 2970, 3007 |
| PsuI | RGATCY | 4 cut(s) | 629, 893, 1292, 1853 |
| PsyI | GACNNNGTC | 1 cut(s) | 1617 |
| PvuI | CGATCG | 1 cut(s) | 1192 |
| PvuII | CAGCTG | 1 cut(s) | 566 |
| RsaI | GTAC | 7 cut(s) | 138, 402, 697, 1239, 1300, 2494, 2517 |
| RsaNI | GTAC | 7 cut(s) | 137, 401, 696, 1238, 1299, 2493, 2516 |
| RseI | CAYNNNNRTG | 5 cut(s) | 183, 237, 441, 1530, 2163 |
| Rsr2I | CGGWCCG | 1 cut(s) | 793 |
| RsrII | CGGWCCG | 1 cut(s) | 793 |
| SapI | GCTCTTC | 1 cut(s) | 1734 |
| SatI | GCNGC | 7 cut(s) | 38, 274, 748, 971, 1536, 1964, 2211 |
| Sau96I | GGNCC | 4 cut(s) | 793, 1885, 1906, 3004 |
| ScaI | AGTACT | 2 cut(s) | 2494, 2517 |
| SchI | GAGTC | 1 cut(s) | 1970 |
| ScrFI | CCNGG | 7 cut(s) | 289, 1909, 2301, 2531, 2717, 2965, 3008 |
| SduI | GDGCHC | 2 cut(s) | 167, 2479 |
| SfaNI | GCATC | 9 cut(s) | 422, 1215, 1237, 1448, 1802, 1958, 1978, 2167, 2361 |
| SfcI | CTRYAG | 1 cut(s) | 2208 |
| Sfr274I | CTCGAG | 1 cut(s) | 1071 |
| SfuI | TTCGAA | 1 cut(s) | 75 |
| SinI | GGWCC | 2 cut(s) | 793, 3004 |
| SlaI | CTCGAG | 1 cut(s) | 1071 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 183, 237, 441, 1530, 2163 |
| SmlI | CTYRAG | 4 cut(s) | 1071, 1168, 1971, 2663 |
| SmoI | CTYRAG | 4 cut(s) | 1071, 1168, 1971, 2663 |
| SphI | GCATGC | 1 cut(s) | 1480 |
| SsiI | CCGC | 8 cut(s) | 167, 243, 271, 274, 296, 367, 791, 2933 |
| SspI | AATATT | 1 cut(s) | 2608 |
| SspMI | CTAG | 8 cut(s) | 918, 1128, 1296, 1764, 1797, 1869, 2147, 2270 |
| StyD4I | CCNGG | 7 cut(s) | 287, 1907, 2299, 2529, 2715, 2963, 3006 |
| StyI | CCWWGG | 3 cut(s) | 691, 2037, 2541 |
| TaaI | ACNGT | 9 cut(s) | 661, 700, 797, 852, 1285, 1617, 2497, 2822, 2894 |
| TaiI | ACGT | 4 cut(s) | 61, 445, 763, 2852 |
| TaqI | TCGA | 4 cut(s) | 75, 1072, 1442, 2375 |
| TatI | WGTACW | 2 cut(s) | 2492, 2515 |
| TauI | GCSGC | 1 cut(s) | 276 |
| TscAI | CASTG | 6 cut(s) | 664, 825, 1622, 2512, 2776, 2899 |
| TseFI | GTSAC | 6 cut(s) | 291, 330, 653, 820, 2042, 2076 |
| TseI | GCWGC | 6 cut(s) | 37, 747, 970, 1535, 1963, 2210 |
| Tsp45I | GTSAC | 6 cut(s) | 291, 330, 653, 820, 2042, 2076 |
| TspGWI | ACGGA | 2 cut(s) | 2175, 2874 |
| TspRI | CASTG | 6 cut(s) | 664, 825, 1622, 2512, 2776, 2899 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1617 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 692, 2401, 2970 |
| VpaK11BI | GGWCC | 2 cut(s) | 793, 3004 |
| VspI | ATTAAT | 1 cut(s) | 1035 |
| XapI | RAATTY | 5 cut(s) | 944, 992, 1351, 1500, 1943 |
| XbaI | TCTAGA | 3 cut(s) | 1796, 1868, 2146 |
| XceI | RCATGY | 2 cut(s) | 1480, 2414 |
| XhoI | CTCGAG | 1 cut(s) | 1071 |
| XmiI | GTMKAC | 2 cut(s) | 757, 1862 |
| XmnI | GAANNNNTTC | 3 cut(s) | 780, 944, 2381 |
| XspI | CTAG | 8 cut(s) | 918, 1128, 1296, 1764, 1797, 1869, 2147, 2270 |
| ZrmI | AGTACT | 2 cut(s) | 2494, 2517 |
| Zsp2I | ATGCAT | 6 cut(s) | 1042, 1230, 1482, 1650, 1795, 2416 |