ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 935 |
| AciI | CCGC | 4 cut(s) | 99, 311, 434, 476 |
| AcoI | YGGCCR | 1 cut(s) | 885 |
| AcsI | RAATTY | 2 cut(s) | 638, 691 |
| AcuI | CTGAAG | 1 cut(s) | 288 |
| AdeI | CACNNNGTG | 1 cut(s) | 935 |
| AfaI | GTAC | 2 cut(s) | 543, 808 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 15, 172, 176, 481, 592, 935 |
| AgsI | TTSAA | 7 cut(s) | 88, 154, 236, 414, 590, 616, 667 |
| AjnI | CCWGG | 1 cut(s) | 57 |
| AluBI | AGCT | 6 cut(s) | 105, 253, 423, 748, 850, 949 |
| AluI | AGCT | 6 cut(s) | 105, 253, 423, 748, 850, 949 |
| AoxI | GGCC | 5 cut(s) | 55, 653, 735, 885, 905 |
| ApeKI | GCWGC | 3 cut(s) | 42, 96, 102 |
| ApoI | RAATTY | 2 cut(s) | 638, 691 |
| AseI | ATTAAT | 2 cut(s) | 567, 825 |
| AspA2I | CCTAGG | 1 cut(s) | 731 |
| AspLEI | GCGC | 1 cut(s) | 42 |
| AspS9I | GGNCC | 3 cut(s) | 55, 653, 735 |
| AsuC2I | CCSGG | 1 cut(s) | 17 |
| AsuHPI | GGTGA | 1 cut(s) | 32 |
| AvrII | CCTAGG | 1 cut(s) | 731 |
| BauI | CACGAG | 1 cut(s) | 528 |
| BbsI | GAAGAC | 3 cut(s) | 129, 192, 902 |
| BbvI | GCAGC | 3 cut(s) | 54, 108, 114 |
| BccI | CCATC | 2 cut(s) | 691, 825 |
| BceAI | ACGGC | 2 cut(s) | 142, 900 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 320, 354 |
| BciT130I | CCWGG | 1 cut(s) | 59 |
| BciVI | GTATCC | 1 cut(s) | 126 |
| BcnI | CCSGG | 1 cut(s) | 17 |
| BfaI | CTAG | 5 cut(s) | 402, 420, 732, 933, 1041 |
| BfuI | GTATCC | 1 cut(s) | 126 |
| BglII | AGATCT | 2 cut(s) | 488, 1012 |
| BisI | GCNGC | 4 cut(s) | 43, 97, 100, 103 |
| BlnI | CCTAGG | 1 cut(s) | 731 |
| BlsI | GCNGC | 4 cut(s) | 44, 98, 101, 104 |
| Bme1390I | CCNGG | 2 cut(s) | 17, 59 |
| BmgT120I | GGNCC | 3 cut(s) | 55, 653, 735 |
| BmrFI | CCNGG | 2 cut(s) | 17, 59 |
| BmsI | GCATC | 2 cut(s) | 202, 851 |
| BpiI | GAAGAC | 3 cut(s) | 129, 192, 902 |
| BpuEI | CTTGAG | 1 cut(s) | 929 |
| BpuMI | CCSGG | 1 cut(s) | 17 |
| Bsa29I | ATCGAT | 1 cut(s) | 210 |
| BsaBI | GATNNNNATC | 1 cut(s) | 113 |
| BsaJI | CCNNGG | 4 cut(s) | 16, 128, 480, 731 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 305, 335, 340, 370 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 15, 172, 176, 481, 592, 935 |
| Bse1I | ACTGG | 1 cut(s) | 985 |
| Bse3DI | GCAATG | 1 cut(s) | 727 |
| Bse8I | GATNNNNATC | 1 cut(s) | 113 |
| BseBI | CCWGG | 1 cut(s) | 59 |
| BseCI | ATCGAT | 1 cut(s) | 210 |
| BseDI | CCNNGG | 4 cut(s) | 16, 128, 480, 731 |
| BseGI | GGATG | 3 cut(s) | 67, 817, 862 |
| BseJI | GATNNNNATC | 1 cut(s) | 113 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 15, 172, 176, 481, 592, 935 |
| BseMI | GCAATG | 1 cut(s) | 727 |
| BseMII | CTCAG | 2 cut(s) | 771, 923 |
| BseNI | ACTGG | 1 cut(s) | 985 |
| BseRI | GAGGAG | 1 cut(s) | 263 |
| BseXI | GCAGC | 3 cut(s) | 54, 108, 114 |
| BseYI | CCCAGC | 1 cut(s) | 837 |
| BshFI | GGCC | 5 cut(s) | 57, 655, 737, 887, 907 |
| BshVI | ATCGAT | 1 cut(s) | 210 |
| BsiSI | CCGG | 1 cut(s) | 16 |
| BslFI | GGGAC | 1 cut(s) | 458 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 15, 172, 176, 481, 592, 935 |
| BsmFI | GGGAC | 1 cut(s) | 458 |
| BsnI | GGCC | 5 cut(s) | 57, 655, 737, 887, 907 |
| Bsp143I | GATC | 5 cut(s) | 207, 337, 440, 488, 1012 |
| BspACI | CCGC | 4 cut(s) | 99, 311, 434, 476 |
| BspANI | GGCC | 5 cut(s) | 57, 655, 737, 887, 907 |
| BspCNI | CTCAG | 2 cut(s) | 772, 922 |
| BspDI | ATCGAT | 1 cut(s) | 210 |
| BsrDI | GCAATG | 1 cut(s) | 727 |
| BsrI | ACTGG | 1 cut(s) | 985 |
| BssECI | CCNNGG | 4 cut(s) | 16, 128, 480, 731 |
| BssMI | GATC | 5 cut(s) | 207, 337, 440, 488, 1012 |
| BssSI | CACGAG | 1 cut(s) | 528 |
| BssT1I | CCWWGG | 3 cut(s) | 128, 480, 731 |
| Bst2BI | CACGAG | 1 cut(s) | 528 |
| Bst2UI | CCWGG | 1 cut(s) | 59 |
| Bst4CI | ACNGT | 1 cut(s) | 149 |
| Bst6I | CTCTTC | 1 cut(s) | 384 |
| BstC8I | GCNNGC | 3 cut(s) | 6, 835, 1038 |
| BstDEI | CTNAG | 5 cut(s) | 296, 509, 780, 909, 915 |
| BstF5I | GGATG | 3 cut(s) | 67, 817, 862 |
| BstHHI | GCGC | 1 cut(s) | 42 |
| BstKTI | GATC | 5 cut(s) | 210, 340, 443, 491, 1015 |
| BstMBI | GATC | 5 cut(s) | 207, 337, 440, 488, 1012 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 102, 839 |
| BstNI | CCWGG | 1 cut(s) | 59 |
| BstNSI | RCATGY | 3 cut(s) | 8, 607, 837 |
| BstSCI | CCNGG | 2 cut(s) | 15, 57 |
| BstV1I | GCAGC | 3 cut(s) | 54, 108, 114 |
| BstV2I | GAAGAC | 3 cut(s) | 129, 192, 902 |
| BstX2I | RGATCY | 2 cut(s) | 488, 1012 |
| BstYI | RGATCY | 2 cut(s) | 488, 1012 |
| Bsu15I | ATCGAT | 1 cut(s) | 210 |
| BsuI | GTATCC | 1 cut(s) | 126 |
| BsuRI | GGCC | 5 cut(s) | 57, 655, 737, 887, 907 |
| BsuTUI | ATCGAT | 1 cut(s) | 210 |
| BtsCI | GGATG | 3 cut(s) | 67, 817, 862 |
| BtsI | GCAGTG | 1 cut(s) | 554 |
| BtsIMutI | CAGTG | 2 cut(s) | 554, 656 |
| Cac8I | GCNNGC | 3 cut(s) | 6, 835, 1038 |
| CfoI | GCGC | 1 cut(s) | 42 |
| Cfr13I | GGNCC | 3 cut(s) | 55, 653, 735 |
| ClaI | ATCGAT | 1 cut(s) | 210 |
| Csp6I | GTAC | 2 cut(s) | 542, 807 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 645, 680 |
| CviAII | CATG | 5 cut(s) | 5, 36, 604, 757, 834 |
| CviQI | GTAC | 2 cut(s) | 542, 807 |
| DdeI | CTNAG | 5 cut(s) | 296, 509, 780, 909, 915 |
| DpnI | GATC | 5 cut(s) | 209, 339, 442, 490, 1014 |
| DpnII | GATC | 5 cut(s) | 207, 337, 440, 488, 1012 |
| DraIII | CACNNNGTG | 1 cut(s) | 935 |
| EaeI | YGGCCR | 1 cut(s) | 885 |
| Eam1104I | CTCTTC | 1 cut(s) | 384 |
| EarI | CTCTTC | 1 cut(s) | 384 |
| Eco130I | CCWWGG | 3 cut(s) | 128, 480, 731 |
| Eco147I | AGGCCT | 1 cut(s) | 907 |
| Eco57I | CTGAAG | 1 cut(s) | 288 |
| EcoRII | CCWGG | 1 cut(s) | 57 |
| EcoT14I | CCWWGG | 3 cut(s) | 128, 480, 731 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| ErhI | CCWWGG | 3 cut(s) | 128, 480, 731 |
| FaeI | CATG | 5 cut(s) | 8, 39, 607, 760, 837 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 177, 209 |
| FaqI | GGGAC | 1 cut(s) | 458 |
| FatI | CATG | 5 cut(s) | 4, 35, 603, 756, 833 |
| FauI | CCCGC | 2 cut(s) | 427, 483 |
| Fnu4HI | GCNGC | 4 cut(s) | 43, 97, 100, 103 |
| FokI | GGATG | 3 cut(s) | 74, 804, 869 |
| Fsp4HI | GCNGC | 4 cut(s) | 43, 97, 100, 103 |
| FspBI | CTAG | 5 cut(s) | 402, 420, 732, 933, 1041 |
| GlaI | GCGC | 1 cut(s) | 41 |
| GluI | GCNGC | 4 cut(s) | 43, 97, 100, 103 |
| GsaI | CCCAGC | 1 cut(s) | 841 |
| HaeIII | GGCC | 5 cut(s) | 57, 655, 737, 887, 907 |
| HapII | CCGG | 1 cut(s) | 16 |
| HhaI | GCGC | 1 cut(s) | 42 |
| Hin1II | CATG | 5 cut(s) | 8, 39, 607, 760, 837 |
| Hin6I | GCGC | 1 cut(s) | 40 |
| HinP1I | GCGC | 1 cut(s) | 40 |
| HincII | GTYRAC | 1 cut(s) | 634 |
| HindII | GTYRAC | 1 cut(s) | 634 |
| HinfI | GANTC | 2 cut(s) | 676, 942 |
| HpaII | CCGG | 1 cut(s) | 16 |
| HphI | GGTGA | 1 cut(s) | 32 |
| Hpy166II | GTNNAC | 4 cut(s) | 302, 387, 634, 1022 |
| Hpy188I | TCNGA | 2 cut(s) | 268, 912 |
| Hpy188III | TCNNGA | 2 cut(s) | 499, 775 |
| Hpy8I | GTNNAC | 4 cut(s) | 302, 387, 634, 1022 |
| Hpy99I | CGWCG | 1 cut(s) | 75 |
| HpyAV | CCTTC | 3 cut(s) | 46, 170, 862 |
| HpyCH4III | ACNGT | 1 cut(s) | 149 |
| HpyCH4IV | ACGT | 3 cut(s) | 70, 396, 792 |
| HpyCH4V | TGCA | 6 cut(s) | 4, 35, 607, 720, 833, 874 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 102, 839 |
| HpyF3I | CTNAG | 5 cut(s) | 296, 509, 780, 909, 915 |
| HpySE526I | ACGT | 3 cut(s) | 70, 396, 792 |
| Hsp92II | CATG | 5 cut(s) | 8, 39, 607, 760, 837 |
| HspAI | GCGC | 1 cut(s) | 40 |
| Kzo9I | GATC | 5 cut(s) | 207, 337, 440, 488, 1012 |
| LmnI | GCTCC | 2 cut(s) | 250, 745 |
| Lsp1109I | GCAGC | 3 cut(s) | 54, 108, 114 |
| LweI | GCATC | 2 cut(s) | 202, 851 |
| MaeI | CTAG | 5 cut(s) | 402, 420, 732, 933, 1041 |
| MaeII | ACGT | 3 cut(s) | 70, 396, 792 |
| MaeIII | GTNAC | 2 cut(s) | 397, 581 |
| MalI | GATC | 5 cut(s) | 209, 339, 442, 490, 1014 |
| MboI | GATC | 5 cut(s) | 207, 337, 440, 488, 1012 |
| MboII | GAAGA | 4 cut(s) | 134, 197, 371, 907 |
| MfeI | CAATTG | 1 cut(s) | 1031 |
| MflI | RGATCY | 2 cut(s) | 488, 1012 |
| MluCI | AATT | 7 cut(s) | 568, 619, 638, 691, 750, 822, 1031 |
| MlyI | GAGTC | 1 cut(s) | 936 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MseI | TTAA | 2 cut(s) | 567, 825 |
| MspA1I | CMGCKG | 1 cut(s) | 99 |
| MspI | CCGG | 1 cut(s) | 16 |
| MspR9I | CCNGG | 2 cut(s) | 17, 59 |
| MunI | CAATTG | 1 cut(s) | 1031 |
| MvaI | CCWGG | 1 cut(s) | 59 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 102, 839 |
| NciI | CCSGG | 1 cut(s) | 17 |
| NdeII | GATC | 5 cut(s) | 207, 337, 440, 488, 1012 |
| NlaIII | CATG | 5 cut(s) | 8, 39, 607, 760, 837 |
| NmuCI | GTSAC | 2 cut(s) | 397, 581 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| NspI | RCATGY | 3 cut(s) | 8, 607, 837 |
| PaeI | GCATGC | 2 cut(s) | 8, 837 |
| PceI | AGGCCT | 1 cut(s) | 907 |
| PfeI | GAWTC | 1 cut(s) | 676 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 935 |
| PkrI | GCNGC | 4 cut(s) | 44, 98, 101, 104 |
| PleI | GAGTC | 1 cut(s) | 936 |
| PpsI | GAGTC | 1 cut(s) | 936 |
| PshBI | ATTAAT | 2 cut(s) | 567, 825 |
| Psp6I | CCWGG | 1 cut(s) | 57 |
| PspFI | CCCAGC | 1 cut(s) | 837 |
| PspGI | CCWGG | 1 cut(s) | 57 |
| PspPI | GGNCC | 3 cut(s) | 55, 653, 735 |
| PsuI | RGATCY | 2 cut(s) | 488, 1012 |
| RsaI | GTAC | 2 cut(s) | 543, 808 |
| RsaNI | GTAC | 2 cut(s) | 542, 807 |
| SaqAI | TTAA | 2 cut(s) | 567, 825 |
| SatI | GCNGC | 4 cut(s) | 43, 97, 100, 103 |
| Sau3AI | GATC | 5 cut(s) | 207, 337, 440, 488, 1012 |
| Sau96I | GGNCC | 3 cut(s) | 55, 653, 735 |
| SchI | GAGTC | 1 cut(s) | 936 |
| ScrFI | CCNGG | 2 cut(s) | 17, 59 |
| SfaNI | GCATC | 2 cut(s) | 202, 851 |
| SmlI | CTYRAG | 1 cut(s) | 944 |
| SmoI | CTYRAG | 1 cut(s) | 944 |
| SphI | GCATGC | 2 cut(s) | 8, 837 |
| Sse9I | AATT | 7 cut(s) | 568, 619, 638, 691, 750, 822, 1031 |
| SseBI | AGGCCT | 1 cut(s) | 907 |
| SsiI | CCGC | 4 cut(s) | 99, 311, 434, 476 |
| SspMI | CTAG | 5 cut(s) | 402, 420, 732, 933, 1041 |
| StuI | AGGCCT | 1 cut(s) | 907 |
| StyD4I | CCNGG | 2 cut(s) | 15, 57 |
| StyI | CCWWGG | 3 cut(s) | 128, 480, 731 |
| TaaI | ACNGT | 1 cut(s) | 149 |
| TaiI | ACGT | 3 cut(s) | 73, 399, 795 |
| TaqI | TCGA | 5 cut(s) | 73, 107, 210, 425, 439 |
| TasI | AATT | 7 cut(s) | 568, 619, 638, 691, 750, 822, 1031 |
| TatI | WGTACW | 1 cut(s) | 541 |
| TauI | GCSGC | 1 cut(s) | 102 |
| TfiI | GAWTC | 1 cut(s) | 676 |
| Tru1I | TTAA | 2 cut(s) | 567, 825 |
| Tru9I | TTAA | 2 cut(s) | 567, 825 |
| TscAI | CASTG | 2 cut(s) | 561, 663 |
| TseFI | GTSAC | 2 cut(s) | 397, 581 |
| TseI | GCWGC | 3 cut(s) | 42, 96, 102 |
| Tsp45I | GTSAC | 2 cut(s) | 397, 581 |
| TspDTI | ATGAA | 4 cut(s) | 65, 198, 689, 745 |
| TspGWI | ACGGA | 1 cut(s) | 971 |
| TspRI | CASTG | 2 cut(s) | 561, 663 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 935 |
| VspI | ATTAAT | 2 cut(s) | 567, 825 |
| XapI | RAATTY | 2 cut(s) | 638, 691 |
| XceI | RCATGY | 3 cut(s) | 8, 607, 837 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 977 |
| XmaJI | CCTAGG | 1 cut(s) | 731 |
| XspI | CTAG | 5 cut(s) | 402, 420, 732, 933, 1041 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |