ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 688 - 809 | 2.1e-18 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1518 |
| Acc16I | TGCGCA | 1 cut(s) | 741 |
| Acc36I | ACCTGC | 2 cut(s) | 1546, 2283 |
| Acc65I | GGTACC | 2 cut(s) | 391, 2242 |
| AccB1I | GGYRCC | 4 cut(s) | 391, 1582, 2132, 2242 |
| AccBSI | CCGCTC | 1 cut(s) | 1218 |
| AccI | GTMKAC | 2 cut(s) | 68, 442 |
| AciI | CCGC | 4 cut(s) | 110, 1218, 2159, 2326 |
| AclWI | GGATC | 4 cut(s) | 42, 111, 1320, 2238 |
| AcoI | YGGCCR | 2 cut(s) | 1638, 2247 |
| AcsI | RAATTY | 5 cut(s) | 79, 251, 565, 957, 1006 |
| AcuI | CTGAAG | 1 cut(s) | 254 |
| AfaI | GTAC | 4 cut(s) | 131, 393, 1647, 2244 |
| AfeI | AGCGCT | 1 cut(s) | 2104 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 126, 1338, 2045, 2165 |
| AjiI | CACGTC | 1 cut(s) | 236 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1851, 1883 |
| Alw21I | GWGCWC | 5 cut(s) | 151, 363, 412, 2038, 2362 |
| Alw26I | GTCTC | 5 cut(s) | 80, 171, 472, 1945, 2252 |
| AlwI | GGATC | 4 cut(s) | 42, 111, 1320, 2238 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2287 |
| Ama87I | CYCGRG | 2 cut(s) | 150, 2445 |
| Aor51HI | AGCGCT | 1 cut(s) | 2104 |
| AoxI | GGCC | 3 cut(s) | 1638, 2003, 2247 |
| ApeKI | GCWGC | 9 cut(s) | 199, 370, 704, 1120, 2278, 2281, 2408, 2423, 2495 |
| ApoI | RAATTY | 5 cut(s) | 79, 251, 565, 957, 1006 |
| AseI | ATTAAT | 2 cut(s) | 1692, 2061 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 544 |
| Asp718I | GGTACC | 2 cut(s) | 391, 2242 |
| AspA2I | CCTAGG | 1 cut(s) | 22 |
| AspLEI | GCGC | 3 cut(s) | 742, 1255, 2105 |
| AspS9I | GGNCC | 1 cut(s) | 815 |
| AsuC2I | CCSGG | 2 cut(s) | 813, 1642 |
| AsuHPI | GGTGA | 2 cut(s) | 290, 1492 |
| AsuII | TTCGAA | 2 cut(s) | 255, 1439 |
| AvaI | CYCGRG | 2 cut(s) | 150, 2445 |
| AvaII | GGWCC | 1 cut(s) | 815 |
| AvrII | CCTAGG | 1 cut(s) | 22 |
| BaeGI | GKGCMC | 1 cut(s) | 1333 |
| BanI | GGYRCC | 4 cut(s) | 391, 1582, 2132, 2242 |
| BanII | GRGCYC | 3 cut(s) | 2038, 2348, 2362 |
| BauI | CACGAG | 1 cut(s) | 1576 |
| Bbv12I | GWGCWC | 5 cut(s) | 151, 363, 412, 2038, 2362 |
| BbvI | GCAGC | 9 cut(s) | 186, 357, 716, 1107, 2290, 2293, 2410, 2420, 2507 |
| BccI | CCATC | 7 cut(s) | 281, 611, 815, 1784, 2047, 2063, 2413 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1951, 1985 |
| BciVI | GTATCC | 1 cut(s) | 807 |
| BclI | TGATCA | 2 cut(s) | 1239, 2080 |
| BcnI | CCSGG | 2 cut(s) | 813, 1642 |
| BcoDI | GTCTC | 5 cut(s) | 80, 171, 472, 1945, 2252 |
| BfmI | CTRYAG | 3 cut(s) | 200, 443, 687 |
| BfoI | RGCGCY | 1 cut(s) | 2106 |
| BfuAI | ACCTGC | 2 cut(s) | 1546, 2283 |
| BfuI | GTATCC | 1 cut(s) | 807 |
| BglII | AGATCT | 1 cut(s) | 1651 |
| BlnI | CCTAGG | 1 cut(s) | 22 |
| BlpI | GCTNAGC | 2 cut(s) | 1464, 2499 |
| Bme1390I | CCNGG | 2 cut(s) | 813, 1642 |
| Bme18I | GGWCC | 1 cut(s) | 815 |
| BmeT110I | CYCGRG | 2 cut(s) | 150, 2445 |
| BmgBI | CACGTC | 1 cut(s) | 236 |
| BmgT120I | GGNCC | 1 cut(s) | 815 |
| BmiI | GGNNCC | 6 cut(s) | 393, 816, 1584, 2134, 2244, 2347 |
| BmrFI | CCNGG | 2 cut(s) | 813, 1642 |
| BmrI | ACTGGG | 1 cut(s) | 2297 |
| BmsI | GCATC | 5 cut(s) | 250, 761, 769, 1896, 2435 |
| BmuI | ACTGGG | 1 cut(s) | 2297 |
| BoxI | GACNNNNGTC | 1 cut(s) | 163 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2249, 2281 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1464, 2499 |
| Bpu14I | TTCGAA | 2 cut(s) | 255, 1439 |
| BpuEI | CTTGAG | 3 cut(s) | 747, 1337, 1732 |
| BpuMI | CCSGG | 2 cut(s) | 813, 1642 |
| Bsa29I | ATCGAT | 1 cut(s) | 1819 |
| BsaBI | GATNNNNATC | 1 cut(s) | 180 |
| BsaJI | CCNNGG | 3 cut(s) | 22, 1626, 1641 |
| BsaWI | WCCGGW | 1 cut(s) | 817 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 793, 823, 858, 888 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 126, 1338, 2045, 2165 |
| Bse118I | RCCGGY | 1 cut(s) | 2245 |
| Bse1I | ACTGG | 3 cut(s) | 1672, 2202, 2292 |
| Bse3DI | GCAATG | 4 cut(s) | 318, 1281, 1461, 2134 |
| Bse8I | GATNNNNATC | 1 cut(s) | 180 |
| BseCI | ATCGAT | 1 cut(s) | 1819 |
| BseDI | CCNNGG | 3 cut(s) | 22, 1626, 1641 |
| BseGI | GGATG | 5 cut(s) | 784, 826, 970, 1795, 2074 |
| BseJI | GATNNNNATC | 1 cut(s) | 180 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 126, 1338, 2045, 2165 |
| BseMI | GCAATG | 4 cut(s) | 318, 1281, 1461, 2134 |
| BseMII | CTCAG | 6 cut(s) | 75, 109, 1940, 2153, 2282, 2490 |
| BseNI | ACTGG | 3 cut(s) | 1672, 2202, 2292 |
| BseRI | GAGGAG | 4 cut(s) | 1646, 2163, 2457, 2460 |
| BseSI | GKGCMC | 1 cut(s) | 1333 |
| BseXI | GCAGC | 9 cut(s) | 186, 357, 716, 1107, 2290, 2293, 2410, 2420, 2507 |
| BsgI | GTGCAG | 3 cut(s) | 100, 231, 2297 |
| BshFI | GGCC | 3 cut(s) | 1640, 2005, 2249 |
| BshNI | GGYRCC | 4 cut(s) | 391, 1582, 2132, 2242 |
| BshVI | ATCGAT | 1 cut(s) | 1819 |
| BsiHKAI | GWGCWC | 5 cut(s) | 151, 363, 412, 2038, 2362 |
| BsiHKCI | CYCGRG | 2 cut(s) | 150, 2445 |
| BsiSI | CCGG | 4 cut(s) | 812, 818, 1641, 2246 |
| BslFI | GGGAC | 4 cut(s) | 173, 828, 869, 1564 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 126, 1338, 2045, 2165 |
| BsmAI | GTCTC | 5 cut(s) | 80, 171, 472, 1945, 2252 |
| BsmFI | GGGAC | 4 cut(s) | 173, 828, 869, 1564 |
| BsmI | GAATGC | 4 cut(s) | 742, 901, 1393, 1621 |
| BsnI | GGCC | 3 cut(s) | 1640, 2005, 2249 |
| BsoBI | CYCGRG | 2 cut(s) | 150, 2445 |
| Bsp119I | TTCGAA | 2 cut(s) | 255, 1439 |
| Bsp1286I | GDGCHC | 7 cut(s) | 151, 363, 412, 1333, 2038, 2348, 2362 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1464, 2499 |
| BspACI | CCGC | 4 cut(s) | 110, 1218, 2159, 2326 |
| BspANI | GGCC | 3 cut(s) | 1640, 2005, 2249 |
| BspCNI | CTCAG | 6 cut(s) | 76, 108, 1941, 2154, 2281, 2491 |
| BspDI | ATCGAT | 1 cut(s) | 1819 |
| BspHI | TCATGA | 1 cut(s) | 1102 |
| BspLI | GGNNCC | 6 cut(s) | 393, 816, 1584, 2134, 2244, 2347 |
| BspMAI | CTGCAG | 1 cut(s) | 204 |
| BspMI | ACCTGC | 2 cut(s) | 1546, 2283 |
| BspPI | GGATC | 4 cut(s) | 42, 111, 1320, 2238 |
| BspT104I | TTCGAA | 2 cut(s) | 255, 1439 |
| BspT107I | GGYRCC | 4 cut(s) | 391, 1582, 2132, 2242 |
| BsrBI | CCGCTC | 1 cut(s) | 1218 |
| BsrDI | GCAATG | 4 cut(s) | 318, 1281, 1461, 2134 |
| BsrFI | RCCGGY | 1 cut(s) | 2245 |
| BsrI | ACTGG | 3 cut(s) | 1672, 2202, 2292 |
| BssAI | RCCGGY | 1 cut(s) | 2245 |
| BssECI | CCNNGG | 3 cut(s) | 22, 1626, 1641 |
| BssSI | CACGAG | 1 cut(s) | 1576 |
| BssT1I | CCWWGG | 2 cut(s) | 22, 1626 |
| Bst2BI | CACGAG | 1 cut(s) | 1576 |
| Bst4CI | ACNGT | 1 cut(s) | 447 |
| Bst6I | CTCTTC | 5 cut(s) | 293, 459, 1404, 2089, 2386 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1460 |
| BstBI | TTCGAA | 2 cut(s) | 255, 1439 |
| BstC8I | GCNNGC | 8 cut(s) | 204, 827, 1257, 1461, 1470, 1510, 2034, 2484 |
| BstDEI | CTNAG | 9 cut(s) | 84, 95, 1182, 1464, 1742, 1949, 2162, 2268, 2499 |
| BstF5I | GGATG | 5 cut(s) | 784, 826, 970, 1795, 2074 |
| BstH2I | RGCGCY | 1 cut(s) | 2106 |
| BstHHI | GCGC | 3 cut(s) | 742, 1255, 2105 |
| BstMAI | GTCTC | 5 cut(s) | 80, 171, 472, 1945, 2252 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 367, 1431, 1460, 1465, 1469, 2278, 2405, 2492 |
| BstNSI | RCATGY | 3 cut(s) | 829, 2189, 2205 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 163 |
| BstSCI | CCNGG | 2 cut(s) | 811, 1640 |
| BstSFI | CTRYAG | 3 cut(s) | 200, 443, 687 |
| BstSLI | GKGCMC | 1 cut(s) | 1333 |
| BstV1I | GCAGC | 9 cut(s) | 186, 357, 716, 1107, 2290, 2293, 2410, 2420, 2507 |
| BstX2I | RGATCY | 3 cut(s) | 34, 1312, 1651 |
| BstYI | RGATCY | 3 cut(s) | 34, 1312, 1651 |
| Bsu15I | ATCGAT | 1 cut(s) | 1819 |
| BsuI | GTATCC | 1 cut(s) | 807 |
| BsuRI | GGCC | 3 cut(s) | 1640, 2005, 2249 |
| BsuTUI | ATCGAT | 1 cut(s) | 1819 |
| BtgZI | GCGATG | 1 cut(s) | 227 |
| BtrI | CACGTC | 1 cut(s) | 236 |
| BtsCI | GGATG | 5 cut(s) | 784, 826, 970, 1795, 2074 |
| BtsIMutI | CAGTG | 4 cut(s) | 636, 1029, 2049, 2195 |
| BveI | ACCTGC | 2 cut(s) | 1546, 2283 |
| Cac8I | GCNNGC | 8 cut(s) | 204, 827, 1257, 1461, 1470, 1510, 2034, 2484 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2287 |
| CciI | TCATGA | 1 cut(s) | 1102 |
| CfoI | GCGC | 3 cut(s) | 742, 1255, 2105 |
| Cfr10I | RCCGGY | 1 cut(s) | 2245 |
| Cfr13I | GGNCC | 1 cut(s) | 815 |
| ClaI | ATCGAT | 1 cut(s) | 1819 |
| CseI | GACGC | 2 cut(s) | 692, 1561 |
| Csp6I | GTAC | 4 cut(s) | 130, 392, 1646, 2243 |
| CviQI | GTAC | 4 cut(s) | 130, 392, 1646, 2243 |
| DdeI | CTNAG | 9 cut(s) | 84, 95, 1182, 1464, 1742, 1949, 2162, 2268, 2499 |
| EaeI | YGGCCR | 2 cut(s) | 1638, 2247 |
| Eam1104I | CTCTTC | 5 cut(s) | 293, 459, 1404, 2089, 2386 |
| EarI | CTCTTC | 5 cut(s) | 293, 459, 1404, 2089, 2386 |
| Ecl136II | GAGCTC | 2 cut(s) | 2036, 2360 |
| Eco130I | CCWWGG | 2 cut(s) | 22, 1626 |
| Eco147I | AGGCCT | 1 cut(s) | 2005 |
| Eco24I | GRGCYC | 3 cut(s) | 2038, 2348, 2362 |
| Eco32I | GATATC | 2 cut(s) | 136, 1112 |
| Eco47I | GGWCC | 1 cut(s) | 815 |
| Eco47III | AGCGCT | 1 cut(s) | 2104 |
| Eco53kI | GAGCTC | 2 cut(s) | 2036, 2360 |
| Eco57I | CTGAAG | 1 cut(s) | 254 |
| Eco88I | CYCGRG | 2 cut(s) | 150, 2445 |
| EcoICRI | GAGCTC | 2 cut(s) | 2036, 2360 |
| EcoRI | GAATTC | 2 cut(s) | 79, 565 |
| EcoRV | GATATC | 2 cut(s) | 136, 1112 |
| EcoT14I | CCWWGG | 2 cut(s) | 22, 1626 |
| EcoT22I | ATGCAT | 2 cut(s) | 784, 1393 |
| EcoT38I | GRGCYC | 3 cut(s) | 2038, 2348, 2362 |
| ErhI | CCWWGG | 2 cut(s) | 22, 1626 |
| FaqI | GGGAC | 4 cut(s) | 173, 828, 869, 1564 |
| FauNDI | CATATG | 1 cut(s) | 2511 |
| FbaI | TGATCA | 2 cut(s) | 1239, 2080 |
| FblI | GTMKAC | 2 cut(s) | 68, 442 |
| FokI | GGATG | 5 cut(s) | 791, 833, 977, 1802, 2081 |
| FriOI | GRGCYC | 3 cut(s) | 2038, 2348, 2362 |
| FspI | TGCGCA | 1 cut(s) | 741 |
| GlaI | GCGC | 3 cut(s) | 741, 1254, 2104 |
| HaeII | RGCGCY | 1 cut(s) | 2106 |
| HaeIII | GGCC | 3 cut(s) | 1640, 2005, 2249 |
| HapII | CCGG | 4 cut(s) | 812, 818, 1641, 2246 |
| HgaI | GACGC | 2 cut(s) | 692, 1561 |
| HhaI | GCGC | 3 cut(s) | 742, 1255, 2105 |
| Hin6I | GCGC | 3 cut(s) | 740, 1253, 2103 |
| HinP1I | GCGC | 3 cut(s) | 740, 1253, 2103 |
| HincII | GTYRAC | 3 cut(s) | 504, 911, 1293 |
| HindII | GTYRAC | 3 cut(s) | 504, 911, 1293 |
| HindIII | AAGCTT | 3 cut(s) | 543, 1187, 1257 |
| HpaI | GTTAAC | 2 cut(s) | 504, 1293 |
| HpaII | CCGG | 4 cut(s) | 812, 818, 1641, 2246 |
| HphI | GGTGA | 2 cut(s) | 290, 1492 |
| Hpy166II | GTNNAC | 9 cut(s) | 69, 443, 504, 660, 911, 1293, 1561, 1592, 2207 |
| Hpy188I | TCNGA | 9 cut(s) | 85, 158, 171, 181, 1244, 1573, 1656, 2179, 2418 |
| Hpy8I | GTNNAC | 9 cut(s) | 69, 443, 504, 660, 911, 1293, 1561, 1592, 2207 |
| Hpy99I | CGWCG | 1 cut(s) | 240 |
| HpyAV | CCTTC | 5 cut(s) | 549, 769, 1399, 1891, 2368 |
| HpyCH4III | ACNGT | 1 cut(s) | 447 |
| HpyCH4IV | ACGT | 1 cut(s) | 235 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 367, 1431, 1460, 1465, 1469, 2278, 2405, 2492 |
| HpyF3I | CTNAG | 9 cut(s) | 84, 95, 1182, 1464, 1742, 1949, 2162, 2268, 2499 |
| HpySE526I | ACGT | 1 cut(s) | 235 |
| HspAI | GCGC | 3 cut(s) | 740, 1253, 2103 |
| KpnI | GGTACC | 2 cut(s) | 395, 2246 |
| Ksp22I | TGATCA | 2 cut(s) | 1239, 2080 |
| KspAI | GTTAAC | 2 cut(s) | 504, 1293 |
| LmnI | GCTCC | 4 cut(s) | 866, 1220, 2041, 2351 |
| Lsp1109I | GCAGC | 9 cut(s) | 186, 357, 716, 1107, 2290, 2293, 2410, 2420, 2507 |
| LweI | GCATC | 5 cut(s) | 250, 761, 769, 1896, 2435 |
| MaeII | ACGT | 1 cut(s) | 235 |
| MaeIII | GTNAC | 6 cut(s) | 447, 456, 634, 721, 874, 1397 |
| MbiI | CCGCTC | 1 cut(s) | 1218 |
| MflI | RGATCY | 3 cut(s) | 34, 1312, 1651 |
| MhlI | GDGCHC | 7 cut(s) | 151, 363, 412, 1333, 2038, 2348, 2362 |
| MlyI | GAGTC | 5 cut(s) | 87, 162, 1081, 1568, 2258 |
| MmeI | TCCRAC | 4 cut(s) | 181, 868, 1551, 1655 |
| Mph1103I | ATGCAT | 2 cut(s) | 784, 1393 |
| MroXI | GAANNNNTTC | 1 cut(s) | 544 |
| MseI | TTAA | 8 cut(s) | 348, 378, 431, 503, 1167, 1292, 1692, 2061 |
| MslI | CAYNNNNRTG | 2 cut(s) | 653, 2200 |
| MspA1I | CMGCKG | 2 cut(s) | 2161, 2498 |
| MspI | CCGG | 4 cut(s) | 812, 818, 1641, 2246 |
| MspR9I | CCNGG | 2 cut(s) | 813, 1642 |
| Mva1269I | GAATGC | 4 cut(s) | 742, 901, 1393, 1621 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 367, 1431, 1460, 1465, 1469, 2278, 2405, 2492 |
| NciI | CCSGG | 2 cut(s) | 813, 1642 |
| NdeI | CATATG | 1 cut(s) | 2511 |
| NlaIV | GGNNCC | 6 cut(s) | 393, 816, 1584, 2134, 2244, 2347 |
| NmeAIII | GCCGAG | 1 cut(s) | 346 |
| NmuCI | GTSAC | 4 cut(s) | 447, 456, 634, 721 |
| NsbI | TGCGCA | 1 cut(s) | 741 |
| NsiI | ATGCAT | 2 cut(s) | 784, 1393 |
| NspI | RCATGY | 3 cut(s) | 829, 2189, 2205 |
| NspV | TTCGAA | 2 cut(s) | 255, 1439 |
| PaeI | GCATGC | 1 cut(s) | 829 |
| PaeR7I | CTCGAG | 2 cut(s) | 150, 2445 |
| PagI | TCATGA | 1 cut(s) | 1102 |
| PceI | AGGCCT | 1 cut(s) | 2005 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2435 |
| PctI | GAATGC | 4 cut(s) | 742, 901, 1393, 1621 |
| PdmI | GAANNNNTTC | 1 cut(s) | 544 |
| PfeI | GAWTC | 6 cut(s) | 176, 571, 949, 1097, 1821, 1924 |
| PfoI | TCCNGGA | 1 cut(s) | 811 |
| PleI | GAGTC | 5 cut(s) | 87, 161, 1080, 1568, 2258 |
| PpsI | GAGTC | 5 cut(s) | 87, 161, 1080, 1568, 2258 |
| PshAI | GACNNNNGTC | 1 cut(s) | 163 |
| PshBI | ATTAAT | 2 cut(s) | 1692, 2061 |
| PsiI | TTATAA | 1 cut(s) | 1518 |
| Psp124BI | GAGCTC | 2 cut(s) | 2038, 2362 |
| PspN4I | GGNNCC | 6 cut(s) | 393, 816, 1584, 2134, 2244, 2347 |
| PspPI | GGNCC | 1 cut(s) | 815 |
| PspXI | VCTCGAGB | 1 cut(s) | 150 |
| PstI | CTGCAG | 1 cut(s) | 204 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2287 |
| PsuI | RGATCY | 3 cut(s) | 34, 1312, 1651 |
| PvuII | CAGCTG | 1 cut(s) | 2498 |
| RsaI | GTAC | 4 cut(s) | 131, 393, 1647, 2244 |
| RsaNI | GTAC | 4 cut(s) | 130, 392, 1646, 2243 |
| RseI | CAYNNNNRTG | 2 cut(s) | 653, 2200 |
| SacI | GAGCTC | 2 cut(s) | 2038, 2362 |
| SaqAI | TTAA | 8 cut(s) | 348, 378, 431, 503, 1167, 1292, 1692, 2061 |
| Sau96I | GGNCC | 1 cut(s) | 815 |
| SchI | GAGTC | 5 cut(s) | 87, 162, 1081, 1568, 2258 |
| ScrFI | CCNGG | 2 cut(s) | 813, 1642 |
| SduI | GDGCHC | 7 cut(s) | 151, 363, 412, 1333, 2038, 2348, 2362 |
| SfaNI | GCATC | 5 cut(s) | 250, 761, 769, 1896, 2435 |
| SfcI | CTRYAG | 3 cut(s) | 200, 443, 687 |
| Sfr274I | CTCGAG | 2 cut(s) | 150, 2445 |
| SfuI | TTCGAA | 2 cut(s) | 255, 1439 |
| SinI | GGWCC | 1 cut(s) | 815 |
| SlaI | CTCGAG | 2 cut(s) | 150, 2445 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 653, 2200 |
| SmlI | CTYRAG | 5 cut(s) | 150, 762, 1316, 1747, 2445 |
| SmoI | CTYRAG | 5 cut(s) | 150, 762, 1316, 1747, 2445 |
| SphI | GCATGC | 1 cut(s) | 829 |
| SseBI | AGGCCT | 1 cut(s) | 2005 |
| SsiI | CCGC | 4 cut(s) | 110, 1218, 2159, 2326 |
| SstI | GAGCTC | 2 cut(s) | 2038, 2362 |
| StuI | AGGCCT | 1 cut(s) | 2005 |
| StyD4I | CCNGG | 2 cut(s) | 811, 1640 |
| StyI | CCWWGG | 2 cut(s) | 22, 1626 |
| TaaI | ACNGT | 1 cut(s) | 447 |
| TaiI | ACGT | 1 cut(s) | 238 |
| TauI | GCSGC | 1 cut(s) | 2329 |
| TfiI | GAWTC | 6 cut(s) | 176, 571, 949, 1097, 1821, 1924 |
| Tru1I | TTAA | 8 cut(s) | 348, 378, 431, 503, 1167, 1292, 1692, 2061 |
| Tru9I | TTAA | 8 cut(s) | 348, 378, 431, 503, 1167, 1292, 1692, 2061 |
| TscAI | CASTG | 4 cut(s) | 643, 1029, 2049, 2202 |
| TseFI | GTSAC | 4 cut(s) | 447, 456, 634, 721 |
| TseI | GCWGC | 9 cut(s) | 199, 370, 704, 1120, 2278, 2281, 2408, 2423, 2495 |
| Tsp45I | GTSAC | 4 cut(s) | 447, 456, 634, 721 |
| TspDTI | ATGAA | 7 cut(s) | 603, 749, 1077, 1119, 1916, 2196, 2207 |
| TspGWI | ACGGA | 1 cut(s) | 521 |
| TspRI | CASTG | 4 cut(s) | 643, 1029, 2049, 2202 |
| VpaK11BI | GGWCC | 1 cut(s) | 815 |
| VspI | ATTAAT | 2 cut(s) | 1692, 2061 |
| XapI | RAATTY | 5 cut(s) | 79, 251, 565, 957, 1006 |
| XbaI | TCTAGA | 1 cut(s) | 1844 |
| XceI | RCATGY | 3 cut(s) | 829, 2189, 2205 |
| XhoI | CTCGAG | 2 cut(s) | 150, 2445 |
| XmaJI | CCTAGG | 1 cut(s) | 22 |
| XmiI | GTMKAC | 2 cut(s) | 68, 442 |
| XmnI | GAANNNNTTC | 1 cut(s) | 544 |
| Zsp2I | ATGCAT | 2 cut(s) | 784, 1393 |