Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 5 - 124 | 2.3e-22 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 362 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 428 |
| AfaI | GTAC | 1 cut(s) | 449 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 428 |
| AgsI | TTSAA | 3 cut(s) | 13, 284, 416 |
| AluBI | AGCT | 2 cut(s) | 245, 419 |
| AluI | AGCT | 2 cut(s) | 245, 419 |
| AspS9I | GGNCC | 1 cut(s) | 112 |
| AsuHPI | GGTGA | 2 cut(s) | 95, 317 |
| AvaII | GGWCC | 1 cut(s) | 112 |
| BbsI | GAAGAC | 1 cut(s) | 117 |
| BccI | CCATC | 1 cut(s) | 14 |
| BfmI | CTRYAG | 2 cut(s) | 318, 443 |
| BfuAI | ACCTGC | 1 cut(s) | 362 |
| Bme18I | GGWCC | 1 cut(s) | 112 |
| BmgT120I | GGNCC | 1 cut(s) | 112 |
| BmiI | GGNNCC | 2 cut(s) | 113, 114 |
| BmsI | GCATC | 1 cut(s) | 427 |
| BpiI | GAAGAC | 1 cut(s) | 117 |
| BpmI | CTGGAG | 1 cut(s) | 405 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 428 |
| BseGI | GGATG | 1 cut(s) | 442 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 428 |
| BseMII | CTCAG | 1 cut(s) | 132 |
| BslFI | GGGAC | 1 cut(s) | 98 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 428 |
| BsmFI | GGGAC | 1 cut(s) | 98 |
| BsmI | GAATGC | 1 cut(s) | 313 |
| Bsp143I | GATC | 1 cut(s) | 171 |
| BspCNI | CTCAG | 1 cut(s) | 133 |
| BspLI | GGNNCC | 2 cut(s) | 113, 114 |
| BspMI | ACCTGC | 1 cut(s) | 362 |
| BssMI | GATC | 1 cut(s) | 171 |
| Bst4CI | ACNGT | 1 cut(s) | 447 |
| BstDEI | CTNAG | 1 cut(s) | 141 |
| BstF5I | GGATG | 1 cut(s) | 442 |
| BstKTI | GATC | 1 cut(s) | 174 |
| BstMBI | GATC | 1 cut(s) | 171 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 233, 242 |
| BstSFI | CTRYAG | 2 cut(s) | 318, 443 |
| BstV2I | GAAGAC | 1 cut(s) | 117 |
| BtsCI | GGATG | 1 cut(s) | 442 |
| BveI | ACCTGC | 1 cut(s) | 362 |
| Cfr13I | GGNCC | 1 cut(s) | 112 |
| Csp6I | GTAC | 1 cut(s) | 448 |
| CviAII | CATG | 2 cut(s) | 332, 353 |
| CviJI | RGCY | 5 cut(s) | 99, 227, 236, 245, 419 |
| CviKI_1 | RGCY | 5 cut(s) | 99, 227, 236, 245, 419 |
| CviQI | GTAC | 1 cut(s) | 448 |
| DdeI | CTNAG | 1 cut(s) | 141 |
| DpnI | GATC | 1 cut(s) | 173 |
| DpnII | GATC | 1 cut(s) | 171 |
| Eco47I | GGWCC | 1 cut(s) | 112 |
| EcoO109I | RGGNCCY | 1 cut(s) | 112 |
| FaeI | CATG | 2 cut(s) | 335, 356 |
| FaqI | GGGAC | 1 cut(s) | 98 |
| FatI | CATG | 2 cut(s) | 331, 352 |
| FauNDI | CATATG | 1 cut(s) | 399 |
| FokI | GGATG | 1 cut(s) | 449 |
| GsuI | CTGGAG | 1 cut(s) | 405 |
| Hin1II | CATG | 2 cut(s) | 335, 356 |
| HinfI | GANTC | 1 cut(s) | 386 |
| HphI | GGTGA | 2 cut(s) | 95, 317 |
| Hpy188III | TCNNGA | 2 cut(s) | 422, 434 |
| HpyAV | CCTTC | 2 cut(s) | 45, 73 |
| HpyCH4III | ACNGT | 1 cut(s) | 447 |
| HpyCH4V | TGCA | 2 cut(s) | 70, 313 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 233, 242 |
| HpyF3I | CTNAG | 1 cut(s) | 141 |
| Hsp92II | CATG | 2 cut(s) | 335, 356 |
| KflI | GGGWCCC | 1 cut(s) | 112 |
| Kzo9I | GATC | 1 cut(s) | 171 |
| LmnI | GCTCC | 1 cut(s) | 424 |
| LpnPI | CCDG | 5 cut(s) | 147, 164, 357, 419, 435 |
| LweI | GCATC | 1 cut(s) | 427 |
| MaeIII | GTNAC | 1 cut(s) | 238 |
| MalI | GATC | 1 cut(s) | 173 |
| MboI | GATC | 1 cut(s) | 171 |
| MboII | GAAGA | 2 cut(s) | 117, 296 |
| MluCI | AATT | 2 cut(s) | 288, 308 |
| MmeI | TCCRAC | 1 cut(s) | 147 |
| MnlI | CCTC | 3 cut(s) | 44, 53, 217 |
| MseI | TTAA | 5 cut(s) | 156, 206, 231, 291, 455 |
| MslI | CAYNNNNRTG | 1 cut(s) | 398 |
| MspA1I | CMGCKG | 1 cut(s) | 245 |
| Mva1269I | GAATGC | 1 cut(s) | 313 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 233, 242 |
| NdeI | CATATG | 1 cut(s) | 399 |
| NdeII | GATC | 1 cut(s) | 171 |
| NlaIII | CATG | 2 cut(s) | 335, 356 |
| NlaIV | GGNNCC | 2 cut(s) | 113, 114 |
| NmuCI | GTSAC | 1 cut(s) | 238 |
| PctI | GAATGC | 1 cut(s) | 313 |
| PfeI | GAWTC | 1 cut(s) | 386 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 428 |
| PpuMI | RGGWCCY | 1 cut(s) | 112 |
| Psp5II | RGGWCCY | 1 cut(s) | 112 |
| PspN4I | GGNNCC | 2 cut(s) | 113, 114 |
| PspPI | GGNCC | 1 cut(s) | 112 |
| PspPPI | RGGWCCY | 1 cut(s) | 112 |
| PvuII | CAGCTG | 1 cut(s) | 245 |
| RsaI | GTAC | 1 cut(s) | 449 |
| RsaNI | GTAC | 1 cut(s) | 448 |
| RseI | CAYNNNNRTG | 1 cut(s) | 398 |
| SaqAI | TTAA | 5 cut(s) | 156, 206, 231, 291, 455 |
| Sau3AI | GATC | 1 cut(s) | 171 |
| Sau96I | GGNCC | 1 cut(s) | 112 |
| SetI | ASST | 7 cut(s) | 64, 247, 298, 307, 325, 376, 421 |
| SfaNI | GCATC | 1 cut(s) | 427 |
| SfcI | CTRYAG | 2 cut(s) | 318, 443 |
| SinI | GGWCC | 1 cut(s) | 112 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 398 |
| Sse9I | AATT | 2 cut(s) | 288, 308 |
| TaaI | ACNGT | 1 cut(s) | 447 |
| TasI | AATT | 2 cut(s) | 288, 308 |
| TfiI | GAWTC | 1 cut(s) | 386 |
| Tru1I | TTAA | 5 cut(s) | 156, 206, 231, 291, 455 |
| Tru9I | TTAA | 5 cut(s) | 156, 206, 231, 291, 455 |
| TseFI | GTSAC | 1 cut(s) | 238 |
| Tsp45I | GTSAC | 1 cut(s) | 238 |
| TspDTI | ATGAA | 3 cut(s) | 27, 317, 386 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 428 |
| VpaK11BI | GGWCC | 1 cut(s) | 112 |