Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 1008 |
| AccB1I | GGYRCC | 1 cut(s) | 1008 |
| AciI | CCGC | 2 cut(s) | 314, 701 |
| AclWI | GGATC | 1 cut(s) | 963 |
| AcoI | YGGCCR | 1 cut(s) | 739 |
| AcsI | RAATTY | 2 cut(s) | 324, 532 |
| AcvI | CACGTG | 1 cut(s) | 675 |
| AfaI | GTAC | 5 cut(s) | 280, 362, 820, 1010, 1017 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 288, 429, 1065 |
| AflIII | ACRYGT | 1 cut(s) | 672 |
| AgsI | TTSAA | 5 cut(s) | 22, 52, 106, 259, 709 |
| AjiI | CACGTC | 1 cut(s) | 1056 |
| AluBI | AGCT | 5 cut(s) | 223, 604, 652, 892, 939 |
| AluI | AGCT | 5 cut(s) | 223, 604, 652, 892, 939 |
| Alw26I | GTCTC | 2 cut(s) | 965, 992 |
| AlwI | GGATC | 1 cut(s) | 963 |
| AoxI | GGCC | 4 cut(s) | 348, 420, 739, 794 |
| ApeKI | GCWGC | 1 cut(s) | 1035 |
| ApoI | RAATTY | 2 cut(s) | 324, 532 |
| AseI | ATTAAT | 1 cut(s) | 96 |
| Asp718I | GGTACC | 1 cut(s) | 1008 |
| AspS9I | GGNCC | 1 cut(s) | 421 |
| AsuHPI | GGTGA | 3 cut(s) | 458, 541, 847 |
| BalI | TGGCCA | 1 cut(s) | 741 |
| BanI | GGYRCC | 1 cut(s) | 1008 |
| BbrPI | CACGTG | 1 cut(s) | 675 |
| BbsI | GAAGAC | 1 cut(s) | 305 |
| BbvI | GCAGC | 1 cut(s) | 1047 |
| BccI | CCATC | 5 cut(s) | 282, 364, 412, 805, 832 |
| BciVI | GTATCC | 1 cut(s) | 68 |
| BcoDI | GTCTC | 2 cut(s) | 965, 992 |
| BfaI | CTAG | 1 cut(s) | 542 |
| BfmI | CTRYAG | 2 cut(s) | 873, 991 |
| BfuI | GTATCC | 1 cut(s) | 68 |
| BisI | GCNGC | 1 cut(s) | 1036 |
| BlpI | GCTNAGC | 1 cut(s) | 600 |
| BlsI | GCNGC | 1 cut(s) | 1037 |
| BmgBI | CACGTC | 1 cut(s) | 1056 |
| BmgT120I | GGNCC | 1 cut(s) | 421 |
| BmiI | GGNNCC | 2 cut(s) | 774, 1010 |
| BmsI | GCATC | 3 cut(s) | 439, 841, 936 |
| BpiI | GAAGAC | 1 cut(s) | 305 |
| Bpu10I | CCTNAGC | 1 cut(s) | 345 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 600 |
| BsaAI | YACGTR | 2 cut(s) | 364, 675 |
| BsaI | GGTCTC | 1 cut(s) | 992 |
| BsaJI | CCNNGG | 3 cut(s) | 283, 767, 806 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 470, 500 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 288, 429, 1065 |
| BseDI | CCNNGG | 3 cut(s) | 283, 767, 806 |
| BseGI | GGATG | 6 cut(s) | 293, 445, 474, 766, 816, 927 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 288, 429, 1065 |
| BseMII | CTCAG | 5 cut(s) | 210, 215, 359, 813, 926 |
| BseRI | GAGGAG | 3 cut(s) | 254, 694, 839 |
| BseXI | GCAGC | 1 cut(s) | 1047 |
| BseYI | CCCAGC | 1 cut(s) | 26 |
| BsgI | GTGCAG | 2 cut(s) | 420, 1054 |
| BshFI | GGCC | 4 cut(s) | 350, 422, 741, 796 |
| BshNI | GGYRCC | 1 cut(s) | 1008 |
| BsiWI | CGTACG | 1 cut(s) | 360 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 288, 429, 1065 |
| BsmAI | GTCTC | 2 cut(s) | 965, 992 |
| BsmBI | CGTCTC | 1 cut(s) | 965 |
| BsnI | GGCC | 4 cut(s) | 350, 422, 741, 796 |
| Bso31I | GGTCTC | 1 cut(s) | 992 |
| Bsp143I | GATC | 1 cut(s) | 955 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 600 |
| BspACI | CCGC | 2 cut(s) | 314, 701 |
| BspANI | GGCC | 4 cut(s) | 350, 422, 741, 796 |
| BspCNI | CTCAG | 5 cut(s) | 211, 216, 358, 814, 927 |
| BspLI | GGNNCC | 2 cut(s) | 774, 1010 |
| BspPI | GGATC | 1 cut(s) | 963 |
| BspT107I | GGYRCC | 1 cut(s) | 1008 |
| BspTNI | GGTCTC | 1 cut(s) | 992 |
| BssECI | CCNNGG | 3 cut(s) | 283, 767, 806 |
| BssMI | GATC | 1 cut(s) | 955 |
| BssT1I | CCWWGG | 1 cut(s) | 283 |
| Bst4CI | ACNGT | 4 cut(s) | 278, 549, 632, 995 |
| Bst6I | CTCTTC | 1 cut(s) | 101 |
| BstBAI | YACGTR | 2 cut(s) | 364, 675 |
| BstC8I | GCNNGC | 3 cut(s) | 645, 925, 941 |
| BstDEI | CTNAG | 9 cut(s) | 219, 224, 234, 305, 345, 600, 615, 822, 935 |
| BstDSI | CCRYGG | 1 cut(s) | 767 |
| BstF5I | GGATG | 6 cut(s) | 293, 445, 474, 766, 816, 927 |
| BstKTI | GATC | 1 cut(s) | 958 |
| BstMAI | GTCTC | 2 cut(s) | 965, 992 |
| BstMBI | GATC | 1 cut(s) | 955 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 551, 565, 649, 802 |
| BstNSI | RCATGY | 3 cut(s) | 142, 647, 927 |
| BstSFI | CTRYAG | 2 cut(s) | 873, 991 |
| BstV1I | GCAGC | 1 cut(s) | 1047 |
| BstV2I | GAAGAC | 1 cut(s) | 305 |
| BsuI | GTATCC | 1 cut(s) | 68 |
| BsuRI | GGCC | 4 cut(s) | 350, 422, 741, 796 |
| BtgI | CCRYGG | 1 cut(s) | 767 |
| BtrI | CACGTC | 1 cut(s) | 1056 |
| BtsCI | GGATG | 6 cut(s) | 293, 445, 474, 766, 816, 927 |
| BtsIMutI | CAGTG | 3 cut(s) | 545, 628, 1000 |
| Cac8I | GCNNGC | 3 cut(s) | 645, 925, 941 |
| Cfr13I | GGNCC | 1 cut(s) | 421 |
| Csp6I | GTAC | 5 cut(s) | 279, 361, 819, 1009, 1016 |
| CviAII | CATG | 9 cut(s) | 139, 194, 526, 640, 644, 743, 924, 1013, 1030 |
| CviQI | GTAC | 5 cut(s) | 279, 361, 819, 1009, 1016 |
| DdeI | CTNAG | 9 cut(s) | 219, 224, 234, 305, 345, 600, 615, 822, 935 |
| DpnI | GATC | 1 cut(s) | 957 |
| DpnII | GATC | 1 cut(s) | 955 |
| EaeI | YGGCCR | 1 cut(s) | 739 |
| Eam1104I | CTCTTC | 1 cut(s) | 101 |
| EarI | CTCTTC | 1 cut(s) | 101 |
| Eco130I | CCWWGG | 1 cut(s) | 283 |
| Eco31I | GGTCTC | 1 cut(s) | 992 |
| Eco32I | GATATC | 1 cut(s) | 748 |
| Eco72I | CACGTG | 1 cut(s) | 675 |
| EcoRV | GATATC | 1 cut(s) | 748 |
| EcoT14I | CCWWGG | 1 cut(s) | 283 |
| EcoT22I | ATGCAT | 3 cut(s) | 411, 645, 929 |
| ErhI | CCWWGG | 1 cut(s) | 283 |
| Esp3I | CGTCTC | 1 cut(s) | 965 |
| FaeI | CATG | 9 cut(s) | 142, 197, 529, 643, 647, 746, 927, 1016, 1033 |
| FatI | CATG | 9 cut(s) | 138, 193, 525, 639, 643, 742, 923, 1012, 1029 |
| FauI | CCCGC | 1 cut(s) | 307 |
| Fnu4HI | GCNGC | 1 cut(s) | 1036 |
| FokI | GGATG | 6 cut(s) | 300, 452, 481, 773, 823, 914 |
| Fsp4HI | GCNGC | 1 cut(s) | 1036 |
| FspBI | CTAG | 1 cut(s) | 542 |
| GluI | GCNGC | 1 cut(s) | 1036 |
| GsaI | CCCAGC | 1 cut(s) | 30 |
| HaeIII | GGCC | 4 cut(s) | 350, 422, 741, 796 |
| Hin1II | CATG | 9 cut(s) | 142, 197, 529, 643, 647, 746, 927, 1016, 1033 |
| HincII | GTYRAC | 1 cut(s) | 89 |
| HindII | GTYRAC | 1 cut(s) | 89 |
| HinfI | GANTC | 6 cut(s) | 4, 382, 460, 587, 665, 857 |
| HphI | GGTGA | 3 cut(s) | 458, 541, 847 |
| Hpy166II | GTNNAC | 2 cut(s) | 89, 1081 |
| Hpy188I | TCNGA | 2 cut(s) | 810, 936 |
| Hpy188III | TCNNGA | 1 cut(s) | 379 |
| Hpy8I | GTNNAC | 2 cut(s) | 89, 1081 |
| HpyAV | CCTTC | 5 cut(s) | 46, 70, 493, 497, 646 |
| HpyCH4III | ACNGT | 4 cut(s) | 278, 549, 632, 995 |
| HpyCH4IV | ACGT | 3 cut(s) | 363, 674, 1055 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 551, 565, 649, 802 |
| HpyF3I | CTNAG | 9 cut(s) | 219, 224, 234, 305, 345, 600, 615, 822, 935 |
| HpySE526I | ACGT | 3 cut(s) | 363, 674, 1055 |
| Hsp92II | CATG | 9 cut(s) | 142, 197, 529, 643, 647, 746, 927, 1016, 1033 |
| KpnI | GGTACC | 1 cut(s) | 1012 |
| Kzo9I | GATC | 1 cut(s) | 955 |
| LmnI | GCTCC | 1 cut(s) | 889 |
| Lsp1109I | GCAGC | 1 cut(s) | 1047 |
| LweI | GCATC | 3 cut(s) | 439, 841, 936 |
| MaeI | CTAG | 1 cut(s) | 542 |
| MaeII | ACGT | 3 cut(s) | 363, 674, 1055 |
| MaeIII | GTNAC | 1 cut(s) | 785 |
| MalI | GATC | 1 cut(s) | 957 |
| MboI | GATC | 1 cut(s) | 955 |
| MboII | GAAGA | 3 cut(s) | 118, 310, 469 |
| MfeI | CAATTG | 1 cut(s) | 591 |
| MlsI | TGGCCA | 1 cut(s) | 741 |
| MluCI | AATT | 9 cut(s) | 97, 156, 267, 324, 532, 591, 710, 918, 1024 |
| MluNI | TGGCCA | 1 cut(s) | 741 |
| MlyI | GAGTC | 1 cut(s) | 596 |
| Mox20I | TGGCCA | 1 cut(s) | 741 |
| Mph1103I | ATGCAT | 3 cut(s) | 411, 645, 929 |
| MscI | TGGCCA | 1 cut(s) | 741 |
| MseI | TTAA | 6 cut(s) | 96, 333, 537, 654, 1020, 1061 |
| MslI | CAYNNNNRTG | 2 cut(s) | 143, 396 |
| Msp20I | TGGCCA | 1 cut(s) | 741 |
| MunI | CAATTG | 1 cut(s) | 591 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 551, 565, 649, 802 |
| NdeII | GATC | 1 cut(s) | 955 |
| NlaIII | CATG | 9 cut(s) | 142, 197, 529, 643, 647, 746, 927, 1016, 1033 |
| NlaIV | GGNNCC | 2 cut(s) | 774, 1010 |
| NmuCI | GTSAC | 1 cut(s) | 785 |
| NsiI | ATGCAT | 3 cut(s) | 411, 645, 929 |
| NspI | RCATGY | 3 cut(s) | 142, 647, 927 |
| PaeI | GCATGC | 2 cut(s) | 647, 927 |
| PfeI | GAWTC | 5 cut(s) | 4, 382, 460, 665, 857 |
| Pfl23II | CGTACG | 1 cut(s) | 360 |
| PkrI | GCNGC | 1 cut(s) | 1037 |
| PleI | GAGTC | 1 cut(s) | 595 |
| PmaCI | CACGTG | 1 cut(s) | 675 |
| PmlI | CACGTG | 1 cut(s) | 675 |
| PpsI | GAGTC | 1 cut(s) | 595 |
| Ppu21I | YACGTR | 2 cut(s) | 364, 675 |
| PshBI | ATTAAT | 1 cut(s) | 96 |
| PspCI | CACGTG | 1 cut(s) | 675 |
| PspFI | CCCAGC | 1 cut(s) | 26 |
| PspLI | CGTACG | 1 cut(s) | 360 |
| PspN4I | GGNNCC | 2 cut(s) | 774, 1010 |
| PspPI | GGNCC | 1 cut(s) | 421 |
| RsaI | GTAC | 5 cut(s) | 280, 362, 820, 1010, 1017 |
| RsaNI | GTAC | 5 cut(s) | 279, 361, 819, 1009, 1016 |
| RseI | CAYNNNNRTG | 2 cut(s) | 143, 396 |
| SaqAI | TTAA | 6 cut(s) | 96, 333, 537, 654, 1020, 1061 |
| SatI | GCNGC | 1 cut(s) | 1036 |
| Sau3AI | GATC | 1 cut(s) | 955 |
| Sau96I | GGNCC | 1 cut(s) | 421 |
| SchI | GAGTC | 1 cut(s) | 596 |
| SfaNI | GCATC | 3 cut(s) | 439, 841, 936 |
| SfcI | CTRYAG | 2 cut(s) | 873, 991 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 143, 396 |
| SphI | GCATGC | 2 cut(s) | 647, 927 |
| Sse9I | AATT | 9 cut(s) | 97, 156, 267, 324, 532, 591, 710, 918, 1024 |
| SsiI | CCGC | 2 cut(s) | 314, 701 |
| SspMI | CTAG | 1 cut(s) | 542 |
| StyI | CCWWGG | 1 cut(s) | 283 |
| TaaI | ACNGT | 4 cut(s) | 278, 549, 632, 995 |
| TaiI | ACGT | 3 cut(s) | 366, 677, 1058 |
| TaqI | TCGA | 1 cut(s) | 378 |
| TasI | AATT | 9 cut(s) | 97, 156, 267, 324, 532, 591, 710, 918, 1024 |
| TatI | WGTACW | 1 cut(s) | 1015 |
| TfiI | GAWTC | 5 cut(s) | 4, 382, 460, 665, 857 |
| Tru1I | TTAA | 6 cut(s) | 96, 333, 537, 654, 1020, 1061 |
| Tru9I | TTAA | 6 cut(s) | 96, 333, 537, 654, 1020, 1061 |
| TscAI | CASTG | 3 cut(s) | 552, 635, 1000 |
| TseFI | GTSAC | 1 cut(s) | 785 |
| TseI | GCWGC | 1 cut(s) | 1035 |
| Tsp45I | GTSAC | 1 cut(s) | 785 |
| TspDTI | ATGAA | 5 cut(s) | 276, 452, 628, 879, 1018 |
| TspGWI | ACGGA | 1 cut(s) | 914 |
| TspRI | CASTG | 3 cut(s) | 552, 635, 1000 |
| VspI | ATTAAT | 1 cut(s) | 96 |
| XapI | RAATTY | 2 cut(s) | 324, 532 |
| XceI | RCATGY | 3 cut(s) | 142, 647, 927 |
| XspI | CTAG | 1 cut(s) | 542 |
| Zsp2I | ATGCAT | 3 cut(s) | 411, 645, 929 |