Polygalacturonase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 96 - 193 | 4.1e-11 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 11, 14, 234 |
| AcoI | YGGCCR | 1 cut(s) | 423 |
| AfaI | GTAC | 1 cut(s) | 106 |
| AflIII | ACRYGT | 1 cut(s) | 265 |
| AgsI | TTSAA | 1 cut(s) | 416 |
| AjnI | CCWGG | 2 cut(s) | 363, 420 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 369, 401 |
| AluBI | AGCT | 3 cut(s) | 399, 500, 522 |
| AluI | AGCT | 3 cut(s) | 399, 500, 522 |
| Alw26I | GTCTC | 1 cut(s) | 539 |
| AoxI | GGCC | 3 cut(s) | 72, 137, 423 |
| ApeKI | GCWGC | 3 cut(s) | 85, 368, 519 |
| AspS9I | GGNCC | 1 cut(s) | 73 |
| AsuHPI | GGTGA | 2 cut(s) | 167, 368 |
| AsuII | TTCGAA | 1 cut(s) | 343 |
| AxyI | CCTNAGG | 1 cut(s) | 200 |
| BalI | TGGCCA | 1 cut(s) | 425 |
| BanII | GRGCYC | 1 cut(s) | 260 |
| BbvI | GCAGC | 3 cut(s) | 72, 355, 531 |
| BccI | CCATC | 1 cut(s) | 434 |
| BceAI | ACGGC | 1 cut(s) | 87 |
| BciT130I | CCWGG | 2 cut(s) | 365, 422 |
| BcoDI | GTCTC | 1 cut(s) | 539 |
| BfaI | CTAG | 1 cut(s) | 45 |
| BisI | GCNGC | 5 cut(s) | 11, 14, 86, 369, 520 |
| BlsI | GCNGC | 5 cut(s) | 12, 15, 87, 370, 521 |
| Bme1390I | CCNGG | 2 cut(s) | 365, 422 |
| BmgT120I | GGNCC | 1 cut(s) | 73 |
| BmiI | GGNNCC | 2 cut(s) | 75, 257 |
| BmrFI | CCNGG | 2 cut(s) | 365, 422 |
| BmsI | GCATC | 1 cut(s) | 286 |
| Bpu14I | TTCGAA | 1 cut(s) | 343 |
| BpuEI | CTTGAG | 1 cut(s) | 336 |
| BsaI | GGTCTC | 1 cut(s) | 539 |
| BsaJI | CCNNGG | 1 cut(s) | 153 |
| Bse118I | RCCGGY | 1 cut(s) | 48 |
| Bse1I | ACTGG | 2 cut(s) | 466, 565 |
| Bse21I | CCTNAGG | 1 cut(s) | 200 |
| BseBI | CCWGG | 2 cut(s) | 365, 422 |
| BseDI | CCNNGG | 1 cut(s) | 153 |
| BseNI | ACTGG | 2 cut(s) | 466, 565 |
| BseXI | GCAGC | 3 cut(s) | 72, 355, 531 |
| BseYI | CCCAGC | 1 cut(s) | 76 |
| BshFI | GGCC | 3 cut(s) | 74, 139, 425 |
| BsiSI | CCGG | 2 cut(s) | 49, 100 |
| BsmAI | GTCTC | 1 cut(s) | 539 |
| BsnI | GGCC | 3 cut(s) | 74, 139, 425 |
| Bso31I | GGTCTC | 1 cut(s) | 539 |
| Bsp119I | TTCGAA | 1 cut(s) | 343 |
| Bsp1286I | GDGCHC | 1 cut(s) | 260 |
| Bsp143I | GATC | 3 cut(s) | 58, 91, 215 |
| BspACI | CCGC | 3 cut(s) | 11, 14, 234 |
| BspANI | GGCC | 3 cut(s) | 74, 139, 425 |
| BspLI | GGNNCC | 2 cut(s) | 75, 257 |
| BspT104I | TTCGAA | 1 cut(s) | 343 |
| BspTNI | GGTCTC | 1 cut(s) | 539 |
| BsrFI | RCCGGY | 1 cut(s) | 48 |
| BsrI | ACTGG | 2 cut(s) | 466, 565 |
| BssAI | RCCGGY | 1 cut(s) | 48 |
| BssECI | CCNNGG | 1 cut(s) | 153 |
| BssMI | GATC | 3 cut(s) | 58, 91, 215 |
| Bst2UI | CCWGG | 2 cut(s) | 365, 422 |
| BstBI | TTCGAA | 1 cut(s) | 343 |
| BstC8I | GCNNGC | 1 cut(s) | 18 |
| BstDEI | CTNAG | 4 cut(s) | 192, 200, 243, 329 |
| BstDSI | CCRYGG | 1 cut(s) | 153 |
| BstKTI | GATC | 3 cut(s) | 61, 94, 218 |
| BstMAI | GTCTC | 1 cut(s) | 539 |
| BstMBI | GATC | 3 cut(s) | 58, 91, 215 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 10, 431 |
| BstNI | CCWGG | 2 cut(s) | 365, 422 |
| BstNSI | RCATGY | 2 cut(s) | 269, 413 |
| BstSCI | CCNGG | 2 cut(s) | 363, 420 |
| BstV1I | GCAGC | 3 cut(s) | 72, 355, 531 |
| Bsu36I | CCTNAGG | 1 cut(s) | 200 |
| BsuRI | GGCC | 3 cut(s) | 74, 139, 425 |
| BtgI | CCRYGG | 1 cut(s) | 153 |
| Cac8I | GCNNGC | 1 cut(s) | 18 |
| Cfr10I | RCCGGY | 1 cut(s) | 48 |
| Cfr13I | GGNCC | 1 cut(s) | 73 |
| Csp6I | GTAC | 1 cut(s) | 105 |
| CviAII | CATG | 3 cut(s) | 266, 410, 571 |
| CviQI | GTAC | 1 cut(s) | 105 |
| DdeI | CTNAG | 4 cut(s) | 192, 200, 243, 329 |
| DpnI | GATC | 3 cut(s) | 60, 93, 217 |
| DpnII | GATC | 3 cut(s) | 58, 91, 215 |
| DraI | TTTAAA | 1 cut(s) | 285 |
| EaeI | YGGCCR | 1 cut(s) | 423 |
| Eco24I | GRGCYC | 1 cut(s) | 260 |
| Eco31I | GGTCTC | 1 cut(s) | 539 |
| Eco81I | CCTNAGG | 1 cut(s) | 200 |
| EcoRII | CCWGG | 2 cut(s) | 363, 420 |
| EcoT22I | ATGCAT | 1 cut(s) | 411 |
| EcoT38I | GRGCYC | 1 cut(s) | 260 |
| FaeI | CATG | 3 cut(s) | 269, 413, 574 |
| FaiI | YATR | 7 cut(s) | 267, 373, 407, 411, 459, 543, 572 |
| FatI | CATG | 3 cut(s) | 265, 409, 570 |
| Fnu4HI | GCNGC | 5 cut(s) | 11, 14, 86, 369, 520 |
| FriOI | GRGCYC | 1 cut(s) | 260 |
| Fsp4HI | GCNGC | 5 cut(s) | 11, 14, 86, 369, 520 |
| FspBI | CTAG | 1 cut(s) | 45 |
| GluI | GCNGC | 5 cut(s) | 11, 14, 86, 369, 520 |
| GsaI | CCCAGC | 1 cut(s) | 80 |
| HaeIII | GGCC | 3 cut(s) | 74, 139, 425 |
| HapII | CCGG | 2 cut(s) | 49, 100 |
| Hin1II | CATG | 3 cut(s) | 269, 413, 574 |
| HinfI | GANTC | 3 cut(s) | 168, 237, 336 |
| HpaII | CCGG | 2 cut(s) | 49, 100 |
| HphI | GGTGA | 2 cut(s) | 167, 368 |
| Hpy166II | GTNNAC | 1 cut(s) | 157 |
| Hpy188I | TCNGA | 4 cut(s) | 31, 58, 487, 538 |
| Hpy8I | GTNNAC | 1 cut(s) | 157 |
| HpyAV | CCTTC | 2 cut(s) | 182, 350 |
| HpyCH4IV | ACGT | 1 cut(s) | 133 |
| HpyCH4V | TGCA | 5 cut(s) | 187, 371, 383, 409, 442 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 10, 431 |
| HpyF3I | CTNAG | 4 cut(s) | 192, 200, 243, 329 |
| HpySE526I | ACGT | 1 cut(s) | 133 |
| Hsp92II | CATG | 3 cut(s) | 269, 413, 574 |
| Kzo9I | GATC | 3 cut(s) | 58, 91, 215 |
| LmnI | GCTCC | 1 cut(s) | 255 |
| Lsp1109I | GCAGC | 3 cut(s) | 72, 355, 531 |
| LweI | GCATC | 1 cut(s) | 286 |
| MaeI | CTAG | 1 cut(s) | 45 |
| MaeII | ACGT | 1 cut(s) | 133 |
| MalI | GATC | 3 cut(s) | 60, 93, 217 |
| MboI | GATC | 3 cut(s) | 58, 91, 215 |
| MboII | GAAGA | 1 cut(s) | 296 |
| MhlI | GDGCHC | 1 cut(s) | 260 |
| MlsI | TGGCCA | 1 cut(s) | 425 |
| MluCI | AATT | 1 cut(s) | 378 |
| MluNI | TGGCCA | 1 cut(s) | 425 |
| MnlI | CCTC | 5 cut(s) | 16, 25, 150, 154, 160 |
| Mox20I | TGGCCA | 1 cut(s) | 425 |
| Mph1103I | ATGCAT | 1 cut(s) | 411 |
| MscI | TGGCCA | 1 cut(s) | 425 |
| MseI | TTAA | 3 cut(s) | 284, 513, 583 |
| Msp20I | TGGCCA | 1 cut(s) | 425 |
| MspI | CCGG | 2 cut(s) | 49, 100 |
| MspR9I | CCNGG | 2 cut(s) | 365, 422 |
| MvaI | CCWGG | 2 cut(s) | 365, 422 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 10, 431 |
| NdeII | GATC | 3 cut(s) | 58, 91, 215 |
| NlaIII | CATG | 3 cut(s) | 269, 413, 574 |
| NlaIV | GGNNCC | 2 cut(s) | 75, 257 |
| NmeAIII | GCCGAG | 1 cut(s) | 380 |
| NsiI | ATGCAT | 1 cut(s) | 411 |
| NspI | RCATGY | 2 cut(s) | 269, 413 |
| NspV | TTCGAA | 1 cut(s) | 343 |
| PciI | ACATGT | 1 cut(s) | 265 |
| PfeI | GAWTC | 3 cut(s) | 168, 237, 336 |
| PkrI | GCNGC | 5 cut(s) | 12, 15, 87, 370, 521 |
| PscI | ACATGT | 1 cut(s) | 265 |
| Psp6I | CCWGG | 2 cut(s) | 363, 420 |
| PspFI | CCCAGC | 1 cut(s) | 76 |
| PspGI | CCWGG | 2 cut(s) | 363, 420 |
| PspN4I | GGNNCC | 2 cut(s) | 75, 257 |
| PspPI | GGNCC | 1 cut(s) | 73 |
| RsaI | GTAC | 1 cut(s) | 106 |
| RsaNI | GTAC | 1 cut(s) | 105 |
| SaqAI | TTAA | 3 cut(s) | 284, 513, 583 |
| SatI | GCNGC | 5 cut(s) | 11, 14, 86, 369, 520 |
| Sau3AI | GATC | 3 cut(s) | 58, 91, 215 |
| Sau96I | GGNCC | 1 cut(s) | 73 |
| ScrFI | CCNGG | 2 cut(s) | 365, 422 |
| SduI | GDGCHC | 1 cut(s) | 260 |
| SetI | ASST | 9 cut(s) | 42, 129, 136, 206, 358, 401, 502, 524, 551 |
| SfaNI | GCATC | 1 cut(s) | 286 |
| SfuI | TTCGAA | 1 cut(s) | 343 |
| SmlI | CTYRAG | 1 cut(s) | 351 |
| SmoI | CTYRAG | 1 cut(s) | 351 |
| Sse9I | AATT | 1 cut(s) | 378 |
| SsiI | CCGC | 3 cut(s) | 11, 14, 234 |
| SspMI | CTAG | 1 cut(s) | 45 |
| StyD4I | CCNGG | 2 cut(s) | 363, 420 |
| TaiI | ACGT | 1 cut(s) | 136 |
| TaqI | TCGA | 3 cut(s) | 90, 214, 343 |
| TasI | AATT | 1 cut(s) | 378 |
| TauI | GCSGC | 2 cut(s) | 13, 16 |
| TfiI | GAWTC | 3 cut(s) | 168, 237, 336 |
| Tru1I | TTAA | 3 cut(s) | 284, 513, 583 |
| Tru9I | TTAA | 3 cut(s) | 284, 513, 583 |
| TseI | GCWGC | 3 cut(s) | 85, 368, 519 |
| TspDTI | ATGAA | 2 cut(s) | 377, 559 |
| TspGWI | ACGGA | 1 cut(s) | 142 |
| XceI | RCATGY | 2 cut(s) | 269, 413 |
| XspI | CTAG | 1 cut(s) | 45 |
| Zsp2I | ATGCAT | 1 cut(s) | 411 |