Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| p450 | PF00067 | 82 - 493 | 9.7e-85 | Cytochrome P450 |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 890 |
| AccBSI | CCGCTC | 1 cut(s) | 845 |
| AccII | CGCG | 2 cut(s) | 1041, 1047 |
| AciI | CCGC | 4 cut(s) | 134, 845, 917, 1045 |
| AclWI | GGATC | 1 cut(s) | 100 |
| AcoI | YGGCCR | 4 cut(s) | 424, 735, 1072, 1395 |
| AcsI | RAATTY | 2 cut(s) | 1193, 1439 |
| AcuI | CTGAAG | 2 cut(s) | 360, 1284 |
| AfaI | GTAC | 2 cut(s) | 1242, 1349 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 422, 723, 1051, 1508 |
| AflIII | ACRYGT | 1 cut(s) | 1039 |
| AgeI | ACCGGT | 1 cut(s) | 1153 |
| AgsI | TTSAA | 8 cut(s) | 263, 295, 403, 444, 1020, 1061, 1183, 1294 |
| AhlI | ACTAGT | 1 cut(s) | 1417 |
| AjnI | CCWGG | 2 cut(s) | 45, 748 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 944, 976 |
| AluBI | AGCT | 8 cut(s) | 97, 344, 624, 650, 1114, 1336, 1408, 1424 |
| AluI | AGCT | 8 cut(s) | 97, 344, 624, 650, 1114, 1336, 1408, 1424 |
| Alw21I | GWGCWC | 1 cut(s) | 1410 |
| Alw26I | GTCTC | 4 cut(s) | 914, 968, 991, 1148 |
| AlwI | GGATC | 1 cut(s) | 100 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 536, 989, 1088 |
| Ama87I | CYCGRG | 1 cut(s) | 628 |
| AoxI | GGCC | 6 cut(s) | 412, 424, 735, 1072, 1176, 1395 |
| ApeKI | GCWGC | 1 cut(s) | 239 |
| ApoI | RAATTY | 2 cut(s) | 1193, 1439 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1178, 1210 |
| AsiGI | ACCGGT | 1 cut(s) | 1153 |
| AspLEI | GCGC | 1 cut(s) | 1049 |
| AspS9I | GGNCC | 4 cut(s) | 131, 413, 1274, 1367 |
| AsuC2I | CCSGG | 1 cut(s) | 1324 |
| AsuHPI | GGTGA | 1 cut(s) | 91 |
| AvaI | CYCGRG | 1 cut(s) | 628 |
| AvaII | GGWCC | 3 cut(s) | 131, 1274, 1367 |
| AxyI | CCTNAGG | 1 cut(s) | 110 |
| BaeGI | GKGCMC | 1 cut(s) | 463 |
| BalI | TGGCCA | 4 cut(s) | 426, 737, 1074, 1397 |
| BanI | GGYRCC | 1 cut(s) | 890 |
| BanII | GRGCYC | 1 cut(s) | 1410 |
| Bbv12I | GWGCWC | 1 cut(s) | 1410 |
| BbvI | GCAGC | 1 cut(s) | 226 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 529, 563 |
| BciT130I | CCWGG | 2 cut(s) | 47, 750 |
| BcnI | CCSGG | 1 cut(s) | 1324 |
| BcoDI | GTCTC | 4 cut(s) | 914, 968, 991, 1148 |
| BcuI | ACTAGT | 1 cut(s) | 1417 |
| BfaI | CTAG | 4 cut(s) | 221, 723, 797, 1418 |
| BfmI | CTRYAG | 1 cut(s) | 981 |
| BglII | AGATCT | 1 cut(s) | 703 |
| BisI | GCNGC | 1 cut(s) | 240 |
| BlsI | GCNGC | 1 cut(s) | 241 |
| Bme1390I | CCNGG | 3 cut(s) | 47, 750, 1324 |
| Bme18I | GGWCC | 3 cut(s) | 131, 1274, 1367 |
| BmeT110I | CYCGRG | 1 cut(s) | 628 |
| BmgT120I | GGNCC | 4 cut(s) | 131, 413, 1274, 1367 |
| BmiI | GGNNCC | 3 cut(s) | 6, 892, 1275 |
| BmrFI | CCNGG | 3 cut(s) | 47, 750, 1324 |
| BmsI | GCATC | 4 cut(s) | 6, 769, 1075, 1270 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1503, 1535 |
| Bpu10I | CCTNAGC | 2 cut(s) | 908, 1503 |
| BpuEI | CTTGAG | 2 cut(s) | 628, 905 |
| BpuMI | CCSGG | 1 cut(s) | 1324 |
| Bsa29I | ATCGAT | 1 cut(s) | 104 |
| BsaI | GGTCTC | 1 cut(s) | 968 |
| BsaJI | CCNNGG | 7 cut(s) | 46, 75, 304, 427, 1050, 1215, 1323 |
| BsaWI | WCCGGW | 1 cut(s) | 1153 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 422, 723, 1051, 1508 |
| Bse118I | RCCGGY | 1 cut(s) | 1153 |
| Bse1I | ACTGG | 1 cut(s) | 672 |
| Bse21I | CCTNAGG | 1 cut(s) | 110 |
| Bse3DI | GCAATG | 2 cut(s) | 545, 1247 |
| BseBI | CCWGG | 2 cut(s) | 47, 750 |
| BseCI | ATCGAT | 1 cut(s) | 104 |
| BseDI | CCNNGG | 7 cut(s) | 46, 75, 304, 427, 1050, 1215, 1323 |
| BseGI | GGATG | 1 cut(s) | 519 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 422, 723, 1051, 1508 |
| BseMI | GCAATG | 2 cut(s) | 545, 1247 |
| BseMII | CTCAG | 2 cut(s) | 101, 1494 |
| BseNI | ACTGG | 1 cut(s) | 672 |
| BseSI | GKGCMC | 1 cut(s) | 463 |
| BseXI | GCAGC | 1 cut(s) | 226 |
| Bsh1236I | CGCG | 2 cut(s) | 1041, 1047 |
| BshFI | GGCC | 6 cut(s) | 414, 426, 737, 1074, 1178, 1397 |
| BshNI | GGYRCC | 1 cut(s) | 890 |
| BshTI | ACCGGT | 1 cut(s) | 1153 |
| BshVI | ATCGAT | 1 cut(s) | 104 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1410 |
| BsiHKCI | CYCGRG | 1 cut(s) | 628 |
| BsiSI | CCGG | 3 cut(s) | 89, 1154, 1323 |
| BslFI | GGGAC | 3 cut(s) | 172, 807, 1287 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 422, 723, 1051, 1508 |
| BsmAI | GTCTC | 4 cut(s) | 914, 968, 991, 1148 |
| BsmBI | CGTCTC | 1 cut(s) | 1148 |
| BsmFI | GGGAC | 3 cut(s) | 172, 807, 1287 |
| BsmI | GAATGC | 1 cut(s) | 432 |
| BsnI | GGCC | 6 cut(s) | 414, 426, 737, 1074, 1178, 1397 |
| Bso31I | GGTCTC | 1 cut(s) | 968 |
| BsoBI | CYCGRG | 1 cut(s) | 628 |
| Bsp1286I | GDGCHC | 2 cut(s) | 463, 1410 |
| Bsp1407I | TGTACA | 1 cut(s) | 1347 |
| Bsp143I | GATC | 6 cut(s) | 101, 105, 168, 684, 703, 925 |
| BspACI | CCGC | 4 cut(s) | 134, 845, 917, 1045 |
| BspANI | GGCC | 6 cut(s) | 414, 426, 737, 1074, 1178, 1397 |
| BspCNI | CTCAG | 2 cut(s) | 102, 1495 |
| BspDI | ATCGAT | 1 cut(s) | 104 |
| BspFNI | CGCG | 2 cut(s) | 1041, 1047 |
| BspHI | TCATGA | 1 cut(s) | 1129 |
| BspLI | GGNNCC | 3 cut(s) | 6, 892, 1275 |
| BspMAI | CTGCAG | 1 cut(s) | 985 |
| BspPI | GGATC | 1 cut(s) | 100 |
| BspT107I | GGYRCC | 1 cut(s) | 890 |
| BspTNI | GGTCTC | 1 cut(s) | 968 |
| BsrBI | CCGCTC | 1 cut(s) | 845 |
| BsrDI | GCAATG | 2 cut(s) | 545, 1247 |
| BsrFI | RCCGGY | 1 cut(s) | 1153 |
| BsrGI | TGTACA | 1 cut(s) | 1347 |
| BsrI | ACTGG | 1 cut(s) | 672 |
| BssAI | RCCGGY | 1 cut(s) | 1153 |
| BssECI | CCNNGG | 7 cut(s) | 46, 75, 304, 427, 1050, 1215, 1323 |
| BssMI | GATC | 6 cut(s) | 101, 105, 168, 684, 703, 925 |
| BssT1I | CCWWGG | 4 cut(s) | 75, 304, 427, 1215 |
| Bst2UI | CCWGG | 2 cut(s) | 47, 750 |
| Bst4CI | ACNGT | 1 cut(s) | 902 |
| Bst6I | CTCTTC | 2 cut(s) | 573, 775 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 989 |
| BstAUI | TGTACA | 1 cut(s) | 1347 |
| BstDEI | CTNAG | 6 cut(s) | 98, 110, 698, 908, 1503, 1522 |
| BstF5I | GGATG | 1 cut(s) | 519 |
| BstFNI | CGCG | 2 cut(s) | 1041, 1047 |
| BstHHI | GCGC | 1 cut(s) | 1049 |
| BstKTI | GATC | 6 cut(s) | 104, 108, 171, 687, 706, 928 |
| BstMAI | GTCTC | 4 cut(s) | 914, 968, 991, 1148 |
| BstMBI | GATC | 6 cut(s) | 101, 105, 168, 684, 703, 925 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 38, 94, 458, 851, 989 |
| BstNI | CCWGG | 2 cut(s) | 47, 750 |
| BstNSI | RCATGY | 3 cut(s) | 366, 1096, 1354 |
| BstSCI | CCNGG | 3 cut(s) | 45, 748, 1322 |
| BstSFI | CTRYAG | 1 cut(s) | 981 |
| BstSLI | GKGCMC | 1 cut(s) | 463 |
| BstUI | CGCG | 2 cut(s) | 1041, 1047 |
| BstV1I | GCAGC | 1 cut(s) | 226 |
| BstX2I | RGATCY | 1 cut(s) | 703 |
| BstYI | RGATCY | 1 cut(s) | 703 |
| Bsu15I | ATCGAT | 1 cut(s) | 104 |
| Bsu36I | CCTNAGG | 1 cut(s) | 110 |
| BsuRI | GGCC | 6 cut(s) | 414, 426, 737, 1074, 1178, 1397 |
| BsuTUI | ATCGAT | 1 cut(s) | 104 |
| BtsCI | GGATG | 1 cut(s) | 519 |
| BtsI | GCAGTG | 1 cut(s) | 978 |
| BtsIMutI | CAGTG | 4 cut(s) | 679, 907, 978, 1254 |
| CaiI | CAGNNNCTG | 3 cut(s) | 536, 989, 1088 |
| CciI | TCATGA | 1 cut(s) | 1129 |
| CfoI | GCGC | 1 cut(s) | 1049 |
| Cfr10I | RCCGGY | 1 cut(s) | 1153 |
| Cfr13I | GGNCC | 4 cut(s) | 131, 413, 1274, 1367 |
| ClaI | ATCGAT | 1 cut(s) | 104 |
| CseI | GACGC | 3 cut(s) | 209, 1030, 1130 |
| Csp6I | GTAC | 2 cut(s) | 1241, 1348 |
| CspAI | ACCGGT | 1 cut(s) | 1153 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 391, 426 |
| CviQI | GTAC | 2 cut(s) | 1241, 1348 |
| DdeI | CTNAG | 6 cut(s) | 98, 110, 698, 908, 1503, 1522 |
| DpnI | GATC | 6 cut(s) | 103, 107, 170, 686, 705, 927 |
| DpnII | GATC | 6 cut(s) | 101, 105, 168, 684, 703, 925 |
| EaeI | YGGCCR | 4 cut(s) | 424, 735, 1072, 1395 |
| Eam1104I | CTCTTC | 2 cut(s) | 573, 775 |
| EarI | CTCTTC | 2 cut(s) | 573, 775 |
| Ecl136II | GAGCTC | 1 cut(s) | 1408 |
| Eco130I | CCWWGG | 4 cut(s) | 75, 304, 427, 1215 |
| Eco147I | AGGCCT | 1 cut(s) | 1178 |
| Eco24I | GRGCYC | 1 cut(s) | 1410 |
| Eco31I | GGTCTC | 1 cut(s) | 968 |
| Eco32I | GATATC | 1 cut(s) | 598 |
| Eco47I | GGWCC | 3 cut(s) | 131, 1274, 1367 |
| Eco53kI | GAGCTC | 1 cut(s) | 1408 |
| Eco57I | CTGAAG | 2 cut(s) | 360, 1284 |
| Eco81I | CCTNAGG | 1 cut(s) | 110 |
| Eco88I | CYCGRG | 1 cut(s) | 628 |
| EcoICRI | GAGCTC | 1 cut(s) | 1408 |
| EcoRII | CCWGG | 2 cut(s) | 45, 748 |
| EcoRV | GATATC | 1 cut(s) | 598 |
| EcoT14I | CCWWGG | 4 cut(s) | 75, 304, 427, 1215 |
| EcoT38I | GRGCYC | 1 cut(s) | 1410 |
| ErhI | CCWWGG | 4 cut(s) | 75, 304, 427, 1215 |
| Esp3I | CGTCTC | 1 cut(s) | 1148 |
| FaqI | GGGAC | 3 cut(s) | 172, 807, 1287 |
| FauNDI | CATATG | 1 cut(s) | 856 |
| Fnu4HI | GCNGC | 1 cut(s) | 240 |
| FokI | GGATG | 1 cut(s) | 526 |
| FriOI | GRGCYC | 1 cut(s) | 1410 |
| Fsp4HI | GCNGC | 1 cut(s) | 240 |
| FspBI | CTAG | 4 cut(s) | 221, 723, 797, 1418 |
| GlaI | GCGC | 1 cut(s) | 1048 |
| GluI | GCNGC | 1 cut(s) | 240 |
| HaeIII | GGCC | 6 cut(s) | 414, 426, 737, 1074, 1178, 1397 |
| HapII | CCGG | 3 cut(s) | 89, 1154, 1323 |
| HgaI | GACGC | 3 cut(s) | 209, 1030, 1130 |
| HhaI | GCGC | 1 cut(s) | 1049 |
| Hin6I | GCGC | 1 cut(s) | 1047 |
| HinP1I | GCGC | 1 cut(s) | 1047 |
| HindIII | AAGCTT | 2 cut(s) | 622, 1334 |
| HinfI | GANTC | 7 cut(s) | 335, 533, 554, 745, 1078, 1133, 1512 |
| HpaII | CCGG | 3 cut(s) | 89, 1154, 1323 |
| HphI | GGTGA | 1 cut(s) | 91 |
| Hpy166II | GTNNAC | 2 cut(s) | 811, 1225 |
| Hpy188I | TCNGA | 3 cut(s) | 155, 340, 468 |
| Hpy188III | TCNNGA | 8 cut(s) | 109, 172, 630, 645, 884, 1025, 1082, 1130 |
| Hpy8I | GTNNAC | 2 cut(s) | 811, 1225 |
| HpyAV | CCTTC | 5 cut(s) | 154, 169, 265, 842, 1189 |
| HpyCH4III | ACNGT | 1 cut(s) | 902 |
| HpyCH4V | TGCA | 8 cut(s) | 366, 550, 854, 874, 948, 983, 1252, 1310 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 38, 94, 458, 851, 989 |
| HpyF3I | CTNAG | 6 cut(s) | 98, 110, 698, 908, 1503, 1522 |
| HspAI | GCGC | 1 cut(s) | 1047 |
| Kzo9I | GATC | 6 cut(s) | 101, 105, 168, 684, 703, 925 |
| LmnI | GCTCC | 3 cut(s) | 4, 487, 1101 |
| Lsp1109I | GCAGC | 1 cut(s) | 226 |
| LweI | GCATC | 4 cut(s) | 6, 769, 1075, 1270 |
| MaeI | CTAG | 4 cut(s) | 221, 723, 797, 1418 |
| MaeIII | GTNAC | 1 cut(s) | 902 |
| MalI | GATC | 6 cut(s) | 103, 107, 170, 686, 705, 927 |
| MbiI | CCGCTC | 1 cut(s) | 845 |
| MboI | GATC | 6 cut(s) | 101, 105, 168, 684, 703, 925 |
| MboII | GAAGA | 6 cut(s) | 275, 590, 755, 792, 1049, 1449 |
| MflI | RGATCY | 1 cut(s) | 703 |
| MhlI | GDGCHC | 2 cut(s) | 463, 1410 |
| MlsI | TGGCCA | 4 cut(s) | 426, 737, 1074, 1397 |
| MluCI | AATT | 6 cut(s) | 488, 814, 1125, 1193, 1317, 1439 |
| MluI | ACGCGT | 1 cut(s) | 1039 |
| MluNI | TGGCCA | 4 cut(s) | 426, 737, 1074, 1397 |
| MlyI | GAGTC | 2 cut(s) | 563, 1521 |
| MmeI | TCCRAC | 2 cut(s) | 109, 1345 |
| Mox20I | TGGCCA | 4 cut(s) | 426, 737, 1074, 1397 |
| MscI | TGGCCA | 4 cut(s) | 426, 737, 1074, 1397 |
| MseI | TTAA | 1 cut(s) | 507 |
| Msp20I | TGGCCA | 4 cut(s) | 426, 737, 1074, 1397 |
| MspI | CCGG | 3 cut(s) | 89, 1154, 1323 |
| MspR9I | CCNGG | 3 cut(s) | 47, 750, 1324 |
| Mva1269I | GAATGC | 1 cut(s) | 432 |
| MvaI | CCWGG | 2 cut(s) | 47, 750 |
| MvnI | CGCG | 2 cut(s) | 1041, 1047 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 38, 94, 458, 851, 989 |
| NciI | CCSGG | 1 cut(s) | 1324 |
| NdeI | CATATG | 1 cut(s) | 856 |
| NdeII | GATC | 6 cut(s) | 101, 105, 168, 684, 703, 925 |
| NlaIV | GGNNCC | 3 cut(s) | 6, 892, 1275 |
| NmeAIII | GCCGAG | 1 cut(s) | 1075 |
| NmuCI | GTSAC | 1 cut(s) | 902 |
| NspI | RCATGY | 3 cut(s) | 366, 1096, 1354 |
| PagI | TCATGA | 1 cut(s) | 1129 |
| PceI | AGGCCT | 1 cut(s) | 1178 |
| PctI | GAATGC | 1 cut(s) | 432 |
| PfeI | GAWTC | 5 cut(s) | 335, 533, 745, 1078, 1133 |
| PfoI | TCCNGGA | 1 cut(s) | 748 |
| PinAI | ACCGGT | 1 cut(s) | 1153 |
| PkrI | GCNGC | 1 cut(s) | 241 |
| PleI | GAGTC | 2 cut(s) | 562, 1520 |
| PpsI | GAGTC | 2 cut(s) | 562, 1520 |
| Psp124BI | GAGCTC | 1 cut(s) | 1410 |
| Psp6I | CCWGG | 2 cut(s) | 45, 748 |
| PspGI | CCWGG | 2 cut(s) | 45, 748 |
| PspN4I | GGNNCC | 3 cut(s) | 6, 892, 1275 |
| PspPI | GGNCC | 4 cut(s) | 131, 413, 1274, 1367 |
| PstI | CTGCAG | 1 cut(s) | 985 |
| PstNI | CAGNNNCTG | 3 cut(s) | 536, 989, 1088 |
| PsuI | RGATCY | 1 cut(s) | 703 |
| RsaI | GTAC | 2 cut(s) | 1242, 1349 |
| RsaNI | GTAC | 2 cut(s) | 1241, 1348 |
| SacI | GAGCTC | 1 cut(s) | 1410 |
| SaqAI | TTAA | 1 cut(s) | 507 |
| SatI | GCNGC | 1 cut(s) | 240 |
| Sau3AI | GATC | 6 cut(s) | 101, 105, 168, 684, 703, 925 |
| Sau96I | GGNCC | 4 cut(s) | 131, 413, 1274, 1367 |
| SchI | GAGTC | 2 cut(s) | 563, 1521 |
| ScrFI | CCNGG | 3 cut(s) | 47, 750, 1324 |
| SduI | GDGCHC | 2 cut(s) | 463, 1410 |
| SfaNI | GCATC | 4 cut(s) | 6, 769, 1075, 1270 |
| SfcI | CTRYAG | 1 cut(s) | 981 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1153 |
| SinI | GGWCC | 3 cut(s) | 131, 1274, 1367 |
| SmlI | CTYRAG | 2 cut(s) | 643, 884 |
| SmoI | CTYRAG | 2 cut(s) | 643, 884 |
| SpeI | ACTAGT | 1 cut(s) | 1417 |
| Sse9I | AATT | 6 cut(s) | 488, 814, 1125, 1193, 1317, 1439 |
| SseBI | AGGCCT | 1 cut(s) | 1178 |
| SsiI | CCGC | 4 cut(s) | 134, 845, 917, 1045 |
| SspI | AATATT | 2 cut(s) | 321, 604 |
| SspMI | CTAG | 4 cut(s) | 221, 723, 797, 1418 |
| SstI | GAGCTC | 1 cut(s) | 1410 |
| StuI | AGGCCT | 1 cut(s) | 1178 |
| StyD4I | CCNGG | 3 cut(s) | 45, 748, 1322 |
| StyI | CCWWGG | 4 cut(s) | 75, 304, 427, 1215 |
| TaaI | ACNGT | 1 cut(s) | 902 |
| TaqI | TCGA | 1 cut(s) | 104 |
| TasI | AATT | 6 cut(s) | 488, 814, 1125, 1193, 1317, 1439 |
| TatI | WGTACW | 1 cut(s) | 1347 |
| TfiI | GAWTC | 5 cut(s) | 335, 533, 745, 1078, 1133 |
| Tru1I | TTAA | 1 cut(s) | 507 |
| Tru9I | TTAA | 1 cut(s) | 507 |
| TscAI | CASTG | 4 cut(s) | 679, 907, 985, 1261 |
| TseFI | GTSAC | 1 cut(s) | 902 |
| TseI | GCWGC | 1 cut(s) | 239 |
| Tsp45I | GTSAC | 1 cut(s) | 902 |
| TspDTI | ATGAA | 8 cut(s) | 98, 348, 591, 922, 1118, 1121, 1146, 1205 |
| TspGWI | ACGGA | 1 cut(s) | 1088 |
| TspRI | CASTG | 4 cut(s) | 679, 907, 985, 1261 |
| VpaK11BI | GGWCC | 3 cut(s) | 131, 1274, 1367 |
| XapI | RAATTY | 2 cut(s) | 1193, 1439 |
| XceI | RCATGY | 3 cut(s) | 366, 1096, 1354 |
| XspI | CTAG | 4 cut(s) | 221, 723, 797, 1418 |