ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 13 - 84 | 6.9e-07 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 107 |
| AccI | GTMKAC | 1 cut(s) | 156 |
| AciI | CCGC | 1 cut(s) | 179 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 21 |
| AgsI | TTSAA | 1 cut(s) | 239 |
| AjnI | CCWGG | 1 cut(s) | 72 |
| Alw26I | GTCTC | 2 cut(s) | 125, 158 |
| AoxI | GGCC | 1 cut(s) | 9 |
| AsuHPI | GGTGA | 1 cut(s) | 128 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 158, 192 |
| BciT130I | CCWGG | 1 cut(s) | 74 |
| BcoDI | GTCTC | 2 cut(s) | 125, 158 |
| BfaI | CTAG | 2 cut(s) | 5, 27 |
| BfuAI | ACCTGC | 1 cut(s) | 107 |
| BglII | AGATCT | 1 cut(s) | 80 |
| Bme1390I | CCNGG | 1 cut(s) | 74 |
| BmrFI | CCNGG | 1 cut(s) | 74 |
| BoxI | GACNNNNGTC | 1 cut(s) | 152 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 105, 137, 200, 232 |
| BsaI | GGTCTC | 2 cut(s) | 125, 158 |
| BsaJI | CCNNGG | 3 cut(s) | 72, 139, 219 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 21 |
| BseBI | CCWGG | 1 cut(s) | 74 |
| BseDI | CCNNGG | 3 cut(s) | 72, 139, 219 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 21 |
| BshFI | GGCC | 1 cut(s) | 11 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 21 |
| BsmAI | GTCTC | 2 cut(s) | 125, 158 |
| BsmI | GAATGC | 1 cut(s) | 86 |
| BsnI | GGCC | 1 cut(s) | 11 |
| Bso31I | GGTCTC | 2 cut(s) | 125, 158 |
| Bsp143I | GATC | 1 cut(s) | 80 |
| BspACI | CCGC | 1 cut(s) | 179 |
| BspANI | GGCC | 1 cut(s) | 11 |
| BspMI | ACCTGC | 1 cut(s) | 107 |
| BspTNI | GGTCTC | 2 cut(s) | 125, 158 |
| BssECI | CCNNGG | 3 cut(s) | 72, 139, 219 |
| BssMI | GATC | 1 cut(s) | 80 |
| BssT1I | CCWWGG | 1 cut(s) | 139 |
| Bst2UI | CCWGG | 1 cut(s) | 74 |
| BstKTI | GATC | 1 cut(s) | 83 |
| BstMAI | GTCTC | 2 cut(s) | 125, 158 |
| BstMBI | GATC | 1 cut(s) | 80 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 113 |
| BstNI | CCWGG | 1 cut(s) | 74 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 152 |
| BstSCI | CCNGG | 1 cut(s) | 72 |
| BstX2I | RGATCY | 1 cut(s) | 80 |
| BstYI | RGATCY | 1 cut(s) | 80 |
| BsuRI | GGCC | 1 cut(s) | 11 |
| BveI | ACCTGC | 1 cut(s) | 107 |
| CviAII | CATG | 2 cut(s) | 145, 205 |
| CviJI | RGCY | 2 cut(s) | 11, 107 |
| CviKI_1 | RGCY | 2 cut(s) | 11, 107 |
| DpnI | GATC | 1 cut(s) | 82 |
| DpnII | GATC | 1 cut(s) | 80 |
| Eco130I | CCWWGG | 1 cut(s) | 139 |
| Eco31I | GGTCTC | 2 cut(s) | 125, 158 |
| EcoRII | CCWGG | 1 cut(s) | 72 |
| EcoT14I | CCWWGG | 1 cut(s) | 139 |
| ErhI | CCWWGG | 1 cut(s) | 139 |
| FaeI | CATG | 2 cut(s) | 148, 208 |
| FaiI | YATR | 7 cut(s) | 93, 95, 110, 146, 174, 206, 253 |
| FatI | CATG | 2 cut(s) | 144, 204 |
| FauNDI | CATATG | 1 cut(s) | 93 |
| FblI | GTMKAC | 1 cut(s) | 156 |
| FspBI | CTAG | 2 cut(s) | 5, 27 |
| HaeIII | GGCC | 1 cut(s) | 11 |
| Hin1II | CATG | 2 cut(s) | 148, 208 |
| HincII | GTYRAC | 1 cut(s) | 157 |
| HindII | GTYRAC | 1 cut(s) | 157 |
| HinfI | GANTC | 1 cut(s) | 30 |
| HphI | GGTGA | 1 cut(s) | 128 |
| Hpy166II | GTNNAC | 1 cut(s) | 157 |
| Hpy188I | TCNGA | 1 cut(s) | 220 |
| Hpy188III | TCNNGA | 1 cut(s) | 295 |
| Hpy8I | GTNNAC | 1 cut(s) | 157 |
| HpyAV | CCTTC | 2 cut(s) | 134, 279 |
| HpyCH4V | TGCA | 5 cut(s) | 53, 59, 86, 191, 231 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 113 |
| Hsp92II | CATG | 2 cut(s) | 148, 208 |
| Kzo9I | GATC | 1 cut(s) | 80 |
| LpnPI | CCDG | 3 cut(s) | 59, 86, 102 |
| MaeI | CTAG | 2 cut(s) | 5, 27 |
| MalI | GATC | 1 cut(s) | 82 |
| MboI | GATC | 1 cut(s) | 80 |
| MboII | GAAGA | 1 cut(s) | 251 |
| MfeI | CAATTG | 1 cut(s) | 54 |
| MflI | RGATCY | 1 cut(s) | 80 |
| MluCI | AATT | 2 cut(s) | 54, 129 |
| MnlI | CCTC | 4 cut(s) | 15, 97, 202, 214 |
| MseI | TTAA | 2 cut(s) | 186, 195 |
| MspR9I | CCNGG | 1 cut(s) | 74 |
| MunI | CAATTG | 1 cut(s) | 54 |
| Mva1269I | GAATGC | 1 cut(s) | 86 |
| MvaI | CCWGG | 1 cut(s) | 74 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 113 |
| NdeI | CATATG | 1 cut(s) | 93 |
| NdeII | GATC | 1 cut(s) | 80 |
| NlaIII | CATG | 2 cut(s) | 148, 208 |
| PctI | GAATGC | 1 cut(s) | 86 |
| PfeI | GAWTC | 1 cut(s) | 30 |
| PshAI | GACNNNNGTC | 1 cut(s) | 152 |
| Psp6I | CCWGG | 1 cut(s) | 72 |
| PspGI | CCWGG | 1 cut(s) | 72 |
| PsuI | RGATCY | 1 cut(s) | 80 |
| SalI | GTCGAC | 1 cut(s) | 155 |
| SaqAI | TTAA | 2 cut(s) | 186, 195 |
| Sau3AI | GATC | 1 cut(s) | 80 |
| ScrFI | CCNGG | 1 cut(s) | 74 |
| SetI | ASST | 4 cut(s) | 121, 225, 229, 288 |
| Sse9I | AATT | 2 cut(s) | 54, 129 |
| SsiI | CCGC | 1 cut(s) | 179 |
| SspMI | CTAG | 2 cut(s) | 5, 27 |
| StyD4I | CCNGG | 1 cut(s) | 72 |
| StyI | CCWWGG | 1 cut(s) | 139 |
| TaqI | TCGA | 1 cut(s) | 156 |
| TaqII | GACCGA | 1 cut(s) | 182 |
| TasI | AATT | 2 cut(s) | 54, 129 |
| TfiI | GAWTC | 1 cut(s) | 30 |
| Tru1I | TTAA | 2 cut(s) | 186, 195 |
| Tru9I | TTAA | 2 cut(s) | 186, 195 |
| XmiI | GTMKAC | 1 cut(s) | 156 |
| XspI | CTAG | 2 cut(s) | 5, 27 |