Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 101 |
| Acc65I | GGTACC | 1 cut(s) | 709 |
| AccB1I | GGYRCC | 1 cut(s) | 709 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 151, 658 |
| AccI | GTMKAC | 1 cut(s) | 721 |
| AciI | CCGC | 1 cut(s) | 647 |
| AclWI | GGATC | 2 cut(s) | 335, 575 |
| AcuI | CTGAAG | 1 cut(s) | 453 |
| AcyI | GRCGYC | 1 cut(s) | 98 |
| AfaI | GTAC | 3 cut(s) | 11, 311, 711 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 151, 658, 739 |
| AflIII | ACRYGT | 1 cut(s) | 306 |
| AgsI | TTSAA | 1 cut(s) | 221 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 415 |
| AluBI | AGCT | 8 cut(s) | 119, 281, 431, 443, 467, 694, 704, 799 |
| AluI | AGCT | 8 cut(s) | 119, 281, 431, 443, 467, 694, 704, 799 |
| Alw26I | GTCTC | 2 cut(s) | 423, 492 |
| AlwI | GGATC | 2 cut(s) | 335, 575 |
| AoxI | GGCC | 2 cut(s) | 261, 648 |
| ApeKI | GCWGC | 3 cut(s) | 187, 281, 472 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 110 |
| Asp718I | GGTACC | 1 cut(s) | 709 |
| AspLEI | GCGC | 1 cut(s) | 72 |
| AspS9I | GGNCC | 2 cut(s) | 616, 649 |
| AsuHPI | GGTGA | 1 cut(s) | 394 |
| AvaII | GGWCC | 1 cut(s) | 616 |
| BaeGI | GKGCMC | 1 cut(s) | 529 |
| BanI | GGYRCC | 1 cut(s) | 709 |
| BauI | CACGAG | 1 cut(s) | 768 |
| BbvCI | CCTCAGC | 1 cut(s) | 705 |
| BbvI | GCAGC | 3 cut(s) | 199, 268, 484 |
| BccI | CCATC | 2 cut(s) | 125, 543 |
| BcoDI | GTCTC | 2 cut(s) | 423, 492 |
| BfaI | CTAG | 2 cut(s) | 458, 672 |
| BisI | GCNGC | 4 cut(s) | 188, 282, 473, 648 |
| BlpI | GCTNAGC | 1 cut(s) | 700 |
| BlsI | GCNGC | 4 cut(s) | 189, 283, 474, 649 |
| Bme18I | GGWCC | 1 cut(s) | 616 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 415 |
| BmgT120I | GGNCC | 2 cut(s) | 616, 649 |
| BmiI | GGNNCC | 1 cut(s) | 711 |
| BmrI | ACTGGG | 1 cut(s) | 277 |
| BmsI | GCATC | 3 cut(s) | 36, 166, 349 |
| BmuI | ACTGGG | 1 cut(s) | 277 |
| BpmI | CTGGAG | 1 cut(s) | 512 |
| Bpu10I | CCTNAGC | 2 cut(s) | 439, 705 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 700 |
| BpuEI | CTTGAG | 2 cut(s) | 215, 398 |
| BsaAI | YACGTR | 1 cut(s) | 309 |
| BsaHI | GRCGYC | 1 cut(s) | 98 |
| BsaI | GGTCTC | 1 cut(s) | 423 |
| BsaJI | CCNNGG | 5 cut(s) | 150, 192, 246, 352, 792 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 151, 658, 739 |
| Bse1I | ACTGG | 2 cut(s) | 71, 272 |
| BseDI | CCNNGG | 5 cut(s) | 150, 192, 246, 352, 792 |
| BseGI | GGATG | 3 cut(s) | 136, 187, 733 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 151, 658, 739 |
| BseMII | CTCAG | 2 cut(s) | 696, 770 |
| BseNI | ACTGG | 2 cut(s) | 71, 272 |
| BseSI | GKGCMC | 1 cut(s) | 529 |
| BseXI | GCAGC | 3 cut(s) | 199, 268, 484 |
| BseYI | CCCAGC | 1 cut(s) | 284 |
| BsgI | GTGCAG | 1 cut(s) | 206 |
| BshFI | GGCC | 2 cut(s) | 263, 650 |
| BshNI | GGYRCC | 1 cut(s) | 709 |
| BslFI | GGGAC | 2 cut(s) | 342, 772 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 151, 658, 739 |
| BsmAI | GTCTC | 2 cut(s) | 423, 492 |
| BsmFI | GGGAC | 2 cut(s) | 342, 772 |
| BsnI | GGCC | 2 cut(s) | 263, 650 |
| Bso31I | GGTCTC | 1 cut(s) | 423 |
| Bsp1286I | GDGCHC | 1 cut(s) | 529 |
| Bsp1407I | TGTACA | 1 cut(s) | 9 |
| Bsp143I | GATC | 3 cut(s) | 16, 340, 567 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 700 |
| Bsp19I | CCATGG | 1 cut(s) | 192 |
| BspACI | CCGC | 1 cut(s) | 647 |
| BspANI | GGCC | 2 cut(s) | 263, 650 |
| BspCNI | CTCAG | 2 cut(s) | 697, 769 |
| BspLI | GGNNCC | 1 cut(s) | 711 |
| BspPI | GGATC | 2 cut(s) | 335, 575 |
| BspT107I | GGYRCC | 1 cut(s) | 709 |
| BspTNI | GGTCTC | 1 cut(s) | 423 |
| BsrGI | TGTACA | 1 cut(s) | 9 |
| BsrI | ACTGG | 2 cut(s) | 71, 272 |
| BssECI | CCNNGG | 5 cut(s) | 150, 192, 246, 352, 792 |
| BssMI | GATC | 3 cut(s) | 16, 340, 567 |
| BssNAI | GTATAC | 1 cut(s) | 722 |
| BssNI | GRCGYC | 1 cut(s) | 98 |
| BssSI | CACGAG | 1 cut(s) | 768 |
| BssT1I | CCWWGG | 4 cut(s) | 150, 192, 246, 352 |
| Bst1107I | GTATAC | 1 cut(s) | 722 |
| Bst2BI | CACGAG | 1 cut(s) | 768 |
| Bst4CI | ACNGT | 2 cut(s) | 316, 509 |
| BstACI | GRCGYC | 1 cut(s) | 98 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 644, 668 |
| BstAUI | TGTACA | 1 cut(s) | 9 |
| BstBAI | YACGTR | 1 cut(s) | 309 |
| BstC8I | GCNNGC | 1 cut(s) | 445 |
| BstDEI | CTNAG | 4 cut(s) | 439, 700, 705, 756 |
| BstDSI | CCRYGG | 1 cut(s) | 192 |
| BstEII | GGTNACC | 1 cut(s) | 382 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 737 |
| BstF5I | GGATG | 3 cut(s) | 136, 187, 733 |
| BstHHI | GCGC | 1 cut(s) | 72 |
| BstKTI | GATC | 3 cut(s) | 19, 343, 570 |
| BstMAI | GTCTC | 2 cut(s) | 423, 492 |
| BstMBI | GATC | 3 cut(s) | 16, 340, 567 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 163, 260, 290, 299, 644, 668 |
| BstNSI | RCATGY | 1 cut(s) | 277 |
| BstPI | GGTNACC | 1 cut(s) | 382 |
| BstSLI | GKGCMC | 1 cut(s) | 529 |
| BstV1I | GCAGC | 3 cut(s) | 199, 268, 484 |
| BstZ17I | GTATAC | 1 cut(s) | 722 |
| BsuRI | GGCC | 2 cut(s) | 263, 650 |
| BtgI | CCRYGG | 1 cut(s) | 192 |
| BtsCI | GGATG | 3 cut(s) | 136, 187, 733 |
| BtsIMutI | CAGTG | 3 cut(s) | 33, 312, 529 |
| Cac8I | GCNNGC | 1 cut(s) | 445 |
| CfoI | GCGC | 1 cut(s) | 72 |
| Cfr13I | GGNCC | 2 cut(s) | 616, 649 |
| Csp6I | GTAC | 3 cut(s) | 10, 310, 710 |
| CviAII | CATG | 5 cut(s) | 94, 103, 193, 274, 539 |
| CviQI | GTAC | 3 cut(s) | 10, 310, 710 |
| DdeI | CTNAG | 4 cut(s) | 439, 700, 705, 756 |
| DpnI | GATC | 3 cut(s) | 18, 342, 569 |
| DpnII | GATC | 3 cut(s) | 16, 340, 567 |
| DriI | GACNNNNNGTC | 1 cut(s) | 415 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 415 |
| Eco130I | CCWWGG | 4 cut(s) | 150, 192, 246, 352 |
| Eco147I | AGGCCT | 1 cut(s) | 263 |
| Eco31I | GGTCTC | 1 cut(s) | 423 |
| Eco47I | GGWCC | 1 cut(s) | 616 |
| Eco57I | CTGAAG | 1 cut(s) | 453 |
| Eco91I | GGTNACC | 1 cut(s) | 382 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 737 |
| EcoO65I | GGTNACC | 1 cut(s) | 382 |
| EcoT14I | CCWWGG | 4 cut(s) | 150, 192, 246, 352 |
| ErhI | CCWWGG | 4 cut(s) | 150, 192, 246, 352 |
| FaeI | CATG | 5 cut(s) | 97, 106, 196, 277, 542 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 45, 77 |
| FaqI | GGGAC | 2 cut(s) | 342, 772 |
| FatI | CATG | 5 cut(s) | 93, 102, 192, 273, 538 |
| FblI | GTMKAC | 1 cut(s) | 721 |
| Fnu4HI | GCNGC | 4 cut(s) | 188, 282, 473, 648 |
| FokI | GGATG | 3 cut(s) | 143, 194, 740 |
| Fsp4HI | GCNGC | 4 cut(s) | 188, 282, 473, 648 |
| FspBI | CTAG | 2 cut(s) | 458, 672 |
| GlaI | GCGC | 1 cut(s) | 71 |
| GluI | GCNGC | 4 cut(s) | 188, 282, 473, 648 |
| GsaI | CCCAGC | 1 cut(s) | 288 |
| GsuI | CTGGAG | 1 cut(s) | 512 |
| HaeIII | GGCC | 2 cut(s) | 263, 650 |
| HhaI | GCGC | 1 cut(s) | 72 |
| Hin1I | GRCGYC | 1 cut(s) | 98 |
| Hin1II | CATG | 5 cut(s) | 97, 106, 196, 277, 542 |
| Hin6I | GCGC | 1 cut(s) | 70 |
| HinP1I | GCGC | 1 cut(s) | 70 |
| HinfI | GANTC | 1 cut(s) | 176 |
| HphI | GGTGA | 1 cut(s) | 394 |
| Hpy166II | GTNNAC | 3 cut(s) | 205, 312, 722 |
| Hpy188I | TCNGA | 4 cut(s) | 181, 567, 759, 796 |
| Hpy188III | TCNNGA | 2 cut(s) | 491, 677 |
| Hpy8I | GTNNAC | 3 cut(s) | 205, 312, 722 |
| HpyCH4III | ACNGT | 2 cut(s) | 316, 509 |
| HpyCH4IV | ACGT | 3 cut(s) | 98, 213, 308 |
| HpyCH4V | TGCA | 4 cut(s) | 49, 187, 447, 472 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 163, 260, 290, 299, 644, 668 |
| HpyF3I | CTNAG | 4 cut(s) | 439, 700, 705, 756 |
| HpySE526I | ACGT | 3 cut(s) | 98, 213, 308 |
| Hsp92I | GRCGYC | 1 cut(s) | 98 |
| Hsp92II | CATG | 5 cut(s) | 97, 106, 196, 277, 542 |
| HspAI | GCGC | 1 cut(s) | 70 |
| KpnI | GGTACC | 1 cut(s) | 713 |
| Kzo9I | GATC | 3 cut(s) | 16, 340, 567 |
| LmnI | GCTCC | 3 cut(s) | 154, 298, 796 |
| LpnPI | CCDG | 8 cut(s) | 35, 52, 253, 270, 433, 476, 710, 726 |
| Lsp1109I | GCAGC | 3 cut(s) | 199, 268, 484 |
| LweI | GCATC | 3 cut(s) | 36, 166, 349 |
| MaeI | CTAG | 2 cut(s) | 458, 672 |
| MaeII | ACGT | 3 cut(s) | 98, 213, 308 |
| MaeIII | GTNAC | 2 cut(s) | 382, 460 |
| MalI | GATC | 3 cut(s) | 18, 342, 569 |
| MboI | GATC | 3 cut(s) | 16, 340, 567 |
| MboII | GAAGA | 3 cut(s) | 16, 118, 557 |
| MhlI | GDGCHC | 1 cut(s) | 529 |
| MluCI | AATT | 1 cut(s) | 136 |
| MlyI | GAGTC | 1 cut(s) | 185 |
| MmeI | TCCRAC | 4 cut(s) | 159, 461, 545, 643 |
| MroXI | GAANNNNTTC | 1 cut(s) | 110 |
| MseI | TTAA | 1 cut(s) | 531 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 163, 260, 290, 299, 644, 668 |
| NcoI | CCATGG | 1 cut(s) | 192 |
| NdeII | GATC | 3 cut(s) | 16, 340, 567 |
| NlaIII | CATG | 5 cut(s) | 97, 106, 196, 277, 542 |
| NlaIV | GGNNCC | 1 cut(s) | 711 |
| NmuCI | GTSAC | 2 cut(s) | 382, 460 |
| NspI | RCATGY | 1 cut(s) | 277 |
| PceI | AGGCCT | 1 cut(s) | 263 |
| PdmI | GAANNNNTTC | 1 cut(s) | 110 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 151, 658 |
| PkrI | GCNGC | 4 cut(s) | 189, 283, 474, 649 |
| PleI | GAGTC | 1 cut(s) | 184 |
| PpsI | GAGTC | 1 cut(s) | 184 |
| Ppu21I | YACGTR | 1 cut(s) | 309 |
| PspEI | GGTNACC | 1 cut(s) | 382 |
| PspFI | CCCAGC | 1 cut(s) | 284 |
| PspN4I | GGNNCC | 1 cut(s) | 711 |
| PspPI | GGNCC | 2 cut(s) | 616, 649 |
| RsaI | GTAC | 3 cut(s) | 11, 311, 711 |
| RsaNI | GTAC | 3 cut(s) | 10, 310, 710 |
| SaqAI | TTAA | 1 cut(s) | 531 |
| SatI | GCNGC | 4 cut(s) | 188, 282, 473, 648 |
| Sau3AI | GATC | 3 cut(s) | 16, 340, 567 |
| Sau96I | GGNCC | 2 cut(s) | 616, 649 |
| SchI | GAGTC | 1 cut(s) | 185 |
| SduI | GDGCHC | 1 cut(s) | 529 |
| SfaNI | GCATC | 3 cut(s) | 36, 166, 349 |
| SinI | GGWCC | 1 cut(s) | 616 |
| SmlI | CTYRAG | 2 cut(s) | 230, 377 |
| SmoI | CTYRAG | 2 cut(s) | 230, 377 |
| Sse9I | AATT | 1 cut(s) | 136 |
| SseBI | AGGCCT | 1 cut(s) | 263 |
| SsiI | CCGC | 1 cut(s) | 647 |
| SspMI | CTAG | 2 cut(s) | 458, 672 |
| StuI | AGGCCT | 1 cut(s) | 263 |
| StyI | CCWWGG | 4 cut(s) | 150, 192, 246, 352 |
| TaaI | ACNGT | 2 cut(s) | 316, 509 |
| TaiI | ACGT | 3 cut(s) | 101, 216, 311 |
| TaqI | TCGA | 1 cut(s) | 498 |
| TasI | AATT | 1 cut(s) | 136 |
| TatI | WGTACW | 1 cut(s) | 9 |
| TauI | GCSGC | 1 cut(s) | 650 |
| Tru1I | TTAA | 1 cut(s) | 531 |
| Tru9I | TTAA | 1 cut(s) | 531 |
| TscAI | CASTG | 3 cut(s) | 40, 319, 529 |
| TseFI | GTSAC | 2 cut(s) | 382, 460 |
| TseI | GCWGC | 3 cut(s) | 187, 281, 472 |
| Tsp45I | GTSAC | 2 cut(s) | 382, 460 |
| TspDTI | ATGAA | 2 cut(s) | 17, 119 |
| TspRI | CASTG | 3 cut(s) | 40, 319, 529 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 151, 658 |
| VpaK11BI | GGWCC | 1 cut(s) | 616 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 737 |
| XceI | RCATGY | 1 cut(s) | 277 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 253 |
| XmiI | GTMKAC | 1 cut(s) | 721 |
| XmnI | GAANNNNTTC | 1 cut(s) | 110 |
| XspI | CTAG | 2 cut(s) | 458, 672 |
| ZraI | GACGTC | 1 cut(s) | 99 |