Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 155 |
| AciI | CCGC | 1 cut(s) | 155 |
| AclWI | GGATC | 1 cut(s) | 55 |
| AcsI | RAATTY | 1 cut(s) | 16 |
| AcuI | CTGAAG | 1 cut(s) | 77 |
| AfaI | GTAC | 2 cut(s) | 372, 456 |
| AgsI | TTSAA | 4 cut(s) | 114, 128, 161, 479 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 134, 166 |
| AluBI | AGCT | 6 cut(s) | 138, 293, 319, 394, 427, 482 |
| AluI | AGCT | 6 cut(s) | 138, 293, 319, 394, 427, 482 |
| Alw21I | GWGCWC | 1 cut(s) | 140 |
| Alw26I | GTCTC | 1 cut(s) | 421 |
| AlwI | GGATC | 1 cut(s) | 55 |
| AoxI | GGCC | 1 cut(s) | 87 |
| ApeKI | GCWGC | 1 cut(s) | 22 |
| ApoI | RAATTY | 1 cut(s) | 16 |
| AspS9I | GGNCC | 2 cut(s) | 88, 442 |
| AsuII | TTCGAA | 1 cut(s) | 14 |
| AvaII | GGWCC | 1 cut(s) | 442 |
| BanII | GRGCYC | 1 cut(s) | 140 |
| Bbv12I | GWGCWC | 1 cut(s) | 140 |
| BbvI | GCAGC | 1 cut(s) | 9 |
| BccI | CCATC | 2 cut(s) | 170, 404 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 4, 38 |
| BcoDI | GTCTC | 1 cut(s) | 421 |
| BisI | GCNGC | 1 cut(s) | 23 |
| BlsI | GCNGC | 1 cut(s) | 24 |
| BmcAI | AGTACT | 1 cut(s) | 372 |
| Bme18I | GGWCC | 1 cut(s) | 442 |
| BmgT120I | GGNCC | 2 cut(s) | 88, 442 |
| BmiI | GGNNCC | 2 cut(s) | 90, 444 |
| BmrI | ACTGGG | 1 cut(s) | 257 |
| BmsI | GCATC | 1 cut(s) | 210 |
| BmuI | ACTGGG | 1 cut(s) | 257 |
| Bpu14I | TTCGAA | 1 cut(s) | 14 |
| Bse1I | ACTGG | 2 cut(s) | 252, 378 |
| BseMII | CTCAG | 2 cut(s) | 281, 369 |
| BseNI | ACTGG | 2 cut(s) | 252, 378 |
| BseRI | GAGGAG | 1 cut(s) | 255 |
| BseXI | GCAGC | 1 cut(s) | 9 |
| BsgI | GTGCAG | 1 cut(s) | 486 |
| Bsh1236I | CGCG | 1 cut(s) | 155 |
| BshFI | GGCC | 1 cut(s) | 89 |
| BsiHKAI | GWGCWC | 1 cut(s) | 140 |
| BsiSI | CCGG | 1 cut(s) | 288 |
| BsmAI | GTCTC | 1 cut(s) | 421 |
| BsnI | GGCC | 1 cut(s) | 89 |
| Bsp119I | TTCGAA | 1 cut(s) | 14 |
| Bsp1286I | GDGCHC | 1 cut(s) | 140 |
| Bsp143I | GATC | 2 cut(s) | 47, 270 |
| BspACI | CCGC | 1 cut(s) | 155 |
| BspANI | GGCC | 1 cut(s) | 89 |
| BspCNI | CTCAG | 2 cut(s) | 280, 370 |
| BspFNI | CGCG | 1 cut(s) | 155 |
| BspLI | GGNNCC | 2 cut(s) | 90, 444 |
| BspPI | GGATC | 1 cut(s) | 55 |
| BspT104I | TTCGAA | 1 cut(s) | 14 |
| BsrI | ACTGG | 2 cut(s) | 252, 378 |
| BssMI | GATC | 2 cut(s) | 47, 270 |
| Bst4CI | ACNGT | 3 cut(s) | 119, 173, 194 |
| BstBI | TTCGAA | 1 cut(s) | 14 |
| BstDEI | CTNAG | 2 cut(s) | 267, 378 |
| BstFNI | CGCG | 1 cut(s) | 155 |
| BstKTI | GATC | 2 cut(s) | 50, 273 |
| BstMAI | GTCTC | 1 cut(s) | 421 |
| BstMBI | GATC | 2 cut(s) | 47, 270 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 161 |
| BstUI | CGCG | 1 cut(s) | 155 |
| BstV1I | GCAGC | 1 cut(s) | 9 |
| BstX2I | RGATCY | 1 cut(s) | 47 |
| BstYI | RGATCY | 1 cut(s) | 47 |
| BsuRI | GGCC | 1 cut(s) | 89 |
| BtsIMutI | CAGTG | 4 cut(s) | 178, 199, 217, 245 |
| Cfr13I | GGNCC | 2 cut(s) | 88, 442 |
| Csp6I | GTAC | 2 cut(s) | 371, 455 |
| CviAII | CATG | 1 cut(s) | 85 |
| CviQI | GTAC | 2 cut(s) | 371, 455 |
| DdeI | CTNAG | 2 cut(s) | 267, 378 |
| DpnI | GATC | 2 cut(s) | 49, 272 |
| DpnII | GATC | 2 cut(s) | 47, 270 |
| Ecl136II | GAGCTC | 1 cut(s) | 138 |
| Eco24I | GRGCYC | 1 cut(s) | 140 |
| Eco47I | GGWCC | 1 cut(s) | 442 |
| Eco53kI | GAGCTC | 1 cut(s) | 138 |
| Eco57I | CTGAAG | 1 cut(s) | 77 |
| EcoICRI | GAGCTC | 1 cut(s) | 138 |
| EcoO109I | RGGNCCY | 1 cut(s) | 442 |
| EcoRI | GAATTC | 1 cut(s) | 16 |
| EcoT38I | GRGCYC | 1 cut(s) | 140 |
| FaeI | CATG | 1 cut(s) | 88 |
| FaiI | YATR | 8 cut(s) | 86, 169, 236, 259, 261, 336, 488, 490 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 114, 146 |
| FatI | CATG | 1 cut(s) | 84 |
| FauNDI | CATATG | 1 cut(s) | 488 |
| Fnu4HI | GCNGC | 1 cut(s) | 23 |
| FriOI | GRGCYC | 1 cut(s) | 140 |
| Fsp4HI | GCNGC | 1 cut(s) | 23 |
| GluI | GCNGC | 1 cut(s) | 23 |
| HaeIII | GGCC | 1 cut(s) | 89 |
| HapII | CCGG | 1 cut(s) | 288 |
| Hin1II | CATG | 1 cut(s) | 88 |
| HindIII | AAGCTT | 1 cut(s) | 317 |
| HpaII | CCGG | 1 cut(s) | 288 |
| Hpy188I | TCNGA | 3 cut(s) | 57, 270, 431 |
| Hpy188III | TCNNGA | 1 cut(s) | 45 |
| HpyAV | CCTTC | 1 cut(s) | 51 |
| HpyCH4III | ACNGT | 3 cut(s) | 119, 173, 194 |
| HpyCH4V | TGCA | 2 cut(s) | 389, 467 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 161 |
| HpyF3I | CTNAG | 2 cut(s) | 267, 378 |
| Hsp92II | CATG | 1 cut(s) | 88 |
| Kzo9I | GATC | 2 cut(s) | 47, 270 |
| LmnI | GCTCC | 4 cut(s) | 143, 268, 290, 432 |
| LpnPI | CCDG | 7 cut(s) | 30, 233, 301, 359, 405, 459, 471 |
| Lsp1109I | GCAGC | 1 cut(s) | 9 |
| LweI | GCATC | 1 cut(s) | 210 |
| MaeIII | GTNAC | 1 cut(s) | 102 |
| MalI | GATC | 2 cut(s) | 49, 272 |
| MboI | GATC | 2 cut(s) | 47, 270 |
| MboII | GAAGA | 3 cut(s) | 42, 353, 394 |
| MflI | RGATCY | 1 cut(s) | 47 |
| MhlI | GDGCHC | 1 cut(s) | 140 |
| MluCI | AATT | 3 cut(s) | 16, 109, 325 |
| MnlI | CCTC | 7 cut(s) | 36, 138, 175, 177, 221, 276, 433 |
| MspA1I | CMGCKG | 1 cut(s) | 394 |
| MspI | CCGG | 1 cut(s) | 288 |
| MvnI | CGCG | 1 cut(s) | 155 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 161 |
| NdeI | CATATG | 1 cut(s) | 488 |
| NdeII | GATC | 2 cut(s) | 47, 270 |
| NlaIII | CATG | 1 cut(s) | 88 |
| NlaIV | GGNNCC | 2 cut(s) | 90, 444 |
| NmuCI | GTSAC | 1 cut(s) | 102 |
| NspV | TTCGAA | 1 cut(s) | 14 |
| PkrI | GCNGC | 1 cut(s) | 24 |
| PpuMI | RGGWCCY | 1 cut(s) | 442 |
| Psp124BI | GAGCTC | 1 cut(s) | 140 |
| Psp5II | RGGWCCY | 1 cut(s) | 442 |
| PspN4I | GGNNCC | 2 cut(s) | 90, 444 |
| PspPI | GGNCC | 2 cut(s) | 88, 442 |
| PspPPI | RGGWCCY | 1 cut(s) | 442 |
| PsuI | RGATCY | 1 cut(s) | 47 |
| PvuII | CAGCTG | 1 cut(s) | 394 |
| RsaI | GTAC | 2 cut(s) | 372, 456 |
| RsaNI | GTAC | 2 cut(s) | 371, 455 |
| SacI | GAGCTC | 1 cut(s) | 140 |
| SatI | GCNGC | 1 cut(s) | 23 |
| Sau3AI | GATC | 2 cut(s) | 47, 270 |
| Sau96I | GGNCC | 2 cut(s) | 88, 442 |
| ScaI | AGTACT | 1 cut(s) | 372 |
| SduI | GDGCHC | 1 cut(s) | 140 |
| SetI | ASST | 9 cut(s) | 140, 149, 188, 295, 321, 396, 429, 460, 484 |
| SfaNI | GCATC | 1 cut(s) | 210 |
| SfuI | TTCGAA | 1 cut(s) | 14 |
| SinI | GGWCC | 1 cut(s) | 442 |
| Sse9I | AATT | 3 cut(s) | 16, 109, 325 |
| SsiI | CCGC | 1 cut(s) | 155 |
| SstI | GAGCTC | 1 cut(s) | 140 |
| TaaI | ACNGT | 3 cut(s) | 119, 173, 194 |
| TaqI | TCGA | 2 cut(s) | 14, 134 |
| TaqII | GACCGA | 1 cut(s) | 312 |
| TasI | AATT | 3 cut(s) | 16, 109, 325 |
| TatI | WGTACW | 1 cut(s) | 370 |
| TscAI | CASTG | 4 cut(s) | 178, 199, 217, 252 |
| TseFI | GTSAC | 1 cut(s) | 102 |
| TseI | GCWGC | 1 cut(s) | 22 |
| Tsp45I | GTSAC | 1 cut(s) | 102 |
| TspDTI | ATGAA | 3 cut(s) | 73, 354, 465 |
| TspRI | CASTG | 4 cut(s) | 178, 199, 217, 252 |
| VpaK11BI | GGWCC | 1 cut(s) | 442 |
| XapI | RAATTY | 1 cut(s) | 16 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 74 |
| ZrmI | AGTACT | 1 cut(s) | 372 |