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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 386 |
| AccBSI | CCGCTC | 1 cut(s) | 298 |
| AciI | CCGC | 3 cut(s) | 178, 296, 468 |
| AclWI | GGATC | 2 cut(s) | 116, 404 |
| AcsI | RAATTY | 1 cut(s) | 128 |
| AcyI | GRCGYC | 1 cut(s) | 239 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 226, 386, 413 |
| AgsI | TTSAA | 1 cut(s) | 397 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 188 |
| AjnI | CCWGG | 1 cut(s) | 412 |
| AluBI | AGCT | 5 cut(s) | 155, 271, 276, 347, 444 |
| AluI | AGCT | 5 cut(s) | 155, 271, 276, 347, 444 |
| Alw26I | GTCTC | 1 cut(s) | 196 |
| AlwI | GGATC | 2 cut(s) | 116, 404 |
| ApeKI | GCWGC | 1 cut(s) | 152 |
| ApoI | RAATTY | 1 cut(s) | 128 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 380 |
| AspLEI | GCGC | 1 cut(s) | 439 |
| AspS9I | GGNCC | 1 cut(s) | 16 |
| AsuHPI | GGTGA | 3 cut(s) | 73, 242, 524 |
| AsuII | TTCGAA | 1 cut(s) | 92 |
| AvaII | GGWCC | 1 cut(s) | 16 |
| BanII | GRGCYC | 1 cut(s) | 323 |
| BbvCI | CCTCAGC | 1 cut(s) | 173 |
| BbvI | GCAGC | 1 cut(s) | 164 |
| BccI | CCATC | 1 cut(s) | 203 |
| BceAI | ACGGC | 1 cut(s) | 252 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 82, 116, 169, 203 |
| BciT130I | CCWGG | 1 cut(s) | 414 |
| BcoDI | GTCTC | 1 cut(s) | 196 |
| BfaI | CTAG | 1 cut(s) | 221 |
| BisI | GCNGC | 2 cut(s) | 153, 178 |
| BlpI | GCTNAGC | 2 cut(s) | 272, 440 |
| BlsI | GCNGC | 2 cut(s) | 154, 179 |
| Bme1390I | CCNGG | 1 cut(s) | 414 |
| Bme18I | GGWCC | 1 cut(s) | 16 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 188 |
| BmgT120I | GGNCC | 1 cut(s) | 16 |
| BmiI | GGNNCC | 2 cut(s) | 322, 377 |
| BmrFI | CCNGG | 1 cut(s) | 414 |
| BmrI | ACTGGG | 1 cut(s) | 326 |
| BmuI | ACTGGG | 1 cut(s) | 326 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 524, 556 |
| Bpu10I | CCTNAGC | 1 cut(s) | 173 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 272, 440 |
| Bpu14I | TTCGAA | 1 cut(s) | 92 |
| BpuEI | CTTGAG | 1 cut(s) | 47 |
| BsaHI | GRCGYC | 1 cut(s) | 239 |
| BsaWI | WCCGGW | 1 cut(s) | 22 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 226, 386, 413 |
| Bse1I | ACTGG | 1 cut(s) | 321 |
| Bse3DI | GCAATG | 1 cut(s) | 334 |
| BseBI | CCWGG | 1 cut(s) | 414 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 226, 386, 413 |
| BseMI | GCAATG | 1 cut(s) | 334 |
| BseMII | CTCAG | 2 cut(s) | 187, 286 |
| BseNI | ACTGG | 1 cut(s) | 321 |
| BseRI | GAGGAG | 5 cut(s) | 176, 195, 580, 583, 586 |
| BseXI | GCAGC | 1 cut(s) | 164 |
| BsiSI | CCGG | 1 cut(s) | 23 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 226, 386, 413 |
| BsmAI | GTCTC | 1 cut(s) | 196 |
| BsmBI | CGTCTC | 1 cut(s) | 196 |
| Bsp119I | TTCGAA | 1 cut(s) | 92 |
| Bsp1286I | GDGCHC | 1 cut(s) | 323 |
| Bsp143I | GATC | 2 cut(s) | 121, 409 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 272, 440 |
| BspACI | CCGC | 3 cut(s) | 178, 296, 468 |
| BspCNI | CTCAG | 2 cut(s) | 186, 285 |
| BspLI | GGNNCC | 2 cut(s) | 322, 377 |
| BspPI | GGATC | 2 cut(s) | 116, 404 |
| BspT104I | TTCGAA | 1 cut(s) | 92 |
| BsrBI | CCGCTC | 1 cut(s) | 298 |
| BsrDI | GCAATG | 1 cut(s) | 334 |
| BsrI | ACTGG | 1 cut(s) | 321 |
| BssMI | GATC | 2 cut(s) | 121, 409 |
| BssNI | GRCGYC | 1 cut(s) | 239 |
| Bst2UI | CCWGG | 1 cut(s) | 414 |
| Bst6I | CTCTTC | 1 cut(s) | 21 |
| BstACI | GRCGYC | 1 cut(s) | 239 |
| BstBI | TTCGAA | 1 cut(s) | 92 |
| BstDEI | CTNAG | 4 cut(s) | 173, 272, 424, 440 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 411 |
| BstHHI | GCGC | 1 cut(s) | 439 |
| BstKTI | GATC | 2 cut(s) | 124, 412 |
| BstMAI | GTCTC | 1 cut(s) | 196 |
| BstMBI | GATC | 2 cut(s) | 121, 409 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 295 |
| BstNI | CCWGG | 1 cut(s) | 414 |
| BstSCI | CCNGG | 1 cut(s) | 412 |
| BstV1I | GCAGC | 1 cut(s) | 164 |
| CfoI | GCGC | 1 cut(s) | 439 |
| Cfr13I | GGNCC | 1 cut(s) | 16 |
| CseI | GACGC | 1 cut(s) | 228 |
| CviAII | CATG | 1 cut(s) | 580 |
| DdeI | CTNAG | 4 cut(s) | 173, 272, 424, 440 |
| DpnI | GATC | 2 cut(s) | 123, 411 |
| DpnII | GATC | 2 cut(s) | 121, 409 |
| DriI | GACNNNNNGTC | 1 cut(s) | 188 |
| Eam1104I | CTCTTC | 1 cut(s) | 21 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 188 |
| EarI | CTCTTC | 1 cut(s) | 21 |
| EciI | GGCGGA | 1 cut(s) | 457 |
| Eco24I | GRGCYC | 1 cut(s) | 323 |
| Eco47I | GGWCC | 1 cut(s) | 16 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 411 |
| EcoO109I | RGGNCCY | 1 cut(s) | 16 |
| EcoRII | CCWGG | 1 cut(s) | 412 |
| EcoT38I | GRGCYC | 1 cut(s) | 323 |
| Esp3I | CGTCTC | 1 cut(s) | 196 |
| FaeI | CATG | 1 cut(s) | 583 |
| FaiI | YATR | 7 cut(s) | 35, 306, 369, 450, 557, 559, 581 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 260, 292 |
| FatI | CATG | 1 cut(s) | 579 |
| FauNDI | CATATG | 1 cut(s) | 557 |
| Fnu4HI | GCNGC | 2 cut(s) | 153, 178 |
| FriOI | GRGCYC | 1 cut(s) | 323 |
| Fsp4HI | GCNGC | 2 cut(s) | 153, 178 |
| FspBI | CTAG | 1 cut(s) | 221 |
| GlaI | GCGC | 1 cut(s) | 438 |
| GluI | GCNGC | 2 cut(s) | 153, 178 |
| HapII | CCGG | 1 cut(s) | 23 |
| HgaI | GACGC | 1 cut(s) | 228 |
| HhaI | GCGC | 1 cut(s) | 439 |
| Hin1I | GRCGYC | 1 cut(s) | 239 |
| Hin1II | CATG | 1 cut(s) | 583 |
| Hin6I | GCGC | 1 cut(s) | 437 |
| HinP1I | GCGC | 1 cut(s) | 437 |
| HinfI | GANTC | 4 cut(s) | 78, 183, 215, 390 |
| HpaII | CCGG | 1 cut(s) | 23 |
| HphI | GGTGA | 3 cut(s) | 73, 242, 524 |
| Hpy188I | TCNGA | 3 cut(s) | 77, 121, 266 |
| Hpy188III | TCNNGA | 2 cut(s) | 373, 532 |
| Hpy99I | CGWCG | 1 cut(s) | 244 |
| HpyAV | CCTTC | 1 cut(s) | 264 |
| HpyCH4IV | ACGT | 1 cut(s) | 97 |
| HpyCH4V | TGCA | 1 cut(s) | 327 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 295 |
| HpyF3I | CTNAG | 4 cut(s) | 173, 272, 424, 440 |
| HpySE526I | ACGT | 1 cut(s) | 97 |
| Hsp92I | GRCGYC | 1 cut(s) | 239 |
| Hsp92II | CATG | 1 cut(s) | 583 |
| HspAI | GCGC | 1 cut(s) | 437 |
| Kzo9I | GATC | 2 cut(s) | 121, 409 |
| LmnI | GCTCC | 2 cut(s) | 326, 576 |
| LpnPI | CCDG | 9 cut(s) | 36, 299, 302, 320, 337, 358, 399, 420, 426 |
| Lsp1109I | GCAGC | 1 cut(s) | 164 |
| MaeI | CTAG | 1 cut(s) | 221 |
| MaeII | ACGT | 1 cut(s) | 97 |
| MaeIII | GTNAC | 1 cut(s) | 307 |
| MalI | GATC | 2 cut(s) | 123, 411 |
| MbiI | CCGCTC | 1 cut(s) | 298 |
| MboI | GATC | 2 cut(s) | 121, 409 |
| MboII | GAAGA | 2 cut(s) | 38, 385 |
| MhlI | GDGCHC | 1 cut(s) | 323 |
| MluCI | AATT | 3 cut(s) | 128, 359, 401 |
| MlyI | GAGTC | 1 cut(s) | 177 |
| MroXI | GAANNNNTTC | 1 cut(s) | 380 |
| MseI | TTAA | 2 cut(s) | 71, 147 |
| MspI | CCGG | 1 cut(s) | 23 |
| MspR9I | CCNGG | 1 cut(s) | 414 |
| MvaI | CCWGG | 1 cut(s) | 414 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 295 |
| NdeI | CATATG | 1 cut(s) | 557 |
| NdeII | GATC | 2 cut(s) | 121, 409 |
| NlaIII | CATG | 1 cut(s) | 583 |
| NlaIV | GGNNCC | 2 cut(s) | 322, 377 |
| NmuCI | GTSAC | 1 cut(s) | 307 |
| NspV | TTCGAA | 1 cut(s) | 92 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 195 |
| PdmI | GAANNNNTTC | 1 cut(s) | 380 |
| PfeI | GAWTC | 3 cut(s) | 78, 215, 390 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 386 |
| PkrI | GCNGC | 2 cut(s) | 154, 179 |
| PleI | GAGTC | 1 cut(s) | 177 |
| PpsI | GAGTC | 1 cut(s) | 177 |
| PpuMI | RGGWCCY | 1 cut(s) | 16 |
| Psp5II | RGGWCCY | 1 cut(s) | 16 |
| Psp6I | CCWGG | 1 cut(s) | 412 |
| PspGI | CCWGG | 1 cut(s) | 412 |
| PspN4I | GGNNCC | 2 cut(s) | 322, 377 |
| PspPI | GGNCC | 1 cut(s) | 16 |
| PspPPI | RGGWCCY | 1 cut(s) | 16 |
| SaqAI | TTAA | 2 cut(s) | 71, 147 |
| SatI | GCNGC | 2 cut(s) | 153, 178 |
| Sau3AI | GATC | 2 cut(s) | 121, 409 |
| Sau96I | GGNCC | 1 cut(s) | 16 |
| SchI | GAGTC | 1 cut(s) | 177 |
| ScrFI | CCNGG | 1 cut(s) | 414 |
| SduI | GDGCHC | 1 cut(s) | 323 |
| SfuI | TTCGAA | 1 cut(s) | 92 |
| SinI | GGWCC | 1 cut(s) | 16 |
| SmlI | CTYRAG | 1 cut(s) | 62 |
| SmoI | CTYRAG | 1 cut(s) | 62 |
| Sse9I | AATT | 3 cut(s) | 128, 359, 401 |
| SsiI | CCGC | 3 cut(s) | 178, 296, 468 |
| SspMI | CTAG | 1 cut(s) | 221 |
| StyD4I | CCNGG | 1 cut(s) | 412 |
| TaiI | ACGT | 1 cut(s) | 100 |
| TaqI | TCGA | 5 cut(s) | 92, 198, 213, 531, 545 |
| TasI | AATT | 3 cut(s) | 128, 359, 401 |
| TauI | GCSGC | 1 cut(s) | 180 |
| TfiI | GAWTC | 3 cut(s) | 78, 215, 390 |
| Tru1I | TTAA | 2 cut(s) | 71, 147 |
| Tru9I | TTAA | 2 cut(s) | 71, 147 |
| TseFI | GTSAC | 1 cut(s) | 307 |
| TseI | GCWGC | 1 cut(s) | 152 |
| Tsp45I | GTSAC | 1 cut(s) | 307 |
| TspDTI | ATGAA | 2 cut(s) | 373, 444 |
| TspGWI | ACGGA | 2 cut(s) | 76, 250 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 386 |
| VpaK11BI | GGWCC | 1 cut(s) | 16 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 411 |
| XapI | RAATTY | 1 cut(s) | 128 |
| XmnI | GAANNNNTTC | 1 cut(s) | 380 |
| XspI | CTAG | 1 cut(s) | 221 |