ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 462 |
| AccII | CGCG | 1 cut(s) | 1217 |
| AciI | CCGC | 5 cut(s) | 1157, 1212, 1215, 1255, 1349 |
| AclWI | GGATC | 4 cut(s) | 824, 1029, 1379, 1395 |
| AcoI | YGGCCR | 2 cut(s) | 358, 1423 |
| AcsI | RAATTY | 2 cut(s) | 78, 726 |
| AcuI | CTGAAG | 3 cut(s) | 239, 248, 379 |
| AcyI | GRCGYC | 1 cut(s) | 1295 |
| AfaI | GTAC | 2 cut(s) | 113, 955 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 496, 881 |
| AflII | CTTAAG | 1 cut(s) | 530 |
| AgeI | ACCGGT | 1 cut(s) | 1316 |
| AgsI | TTSAA | 4 cut(s) | 19, 325, 1055, 1357 |
| AjnI | CCWGG | 1 cut(s) | 874 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1249, 1281 |
| AluBI | AGCT | 8 cut(s) | 74, 164, 174, 425, 434, 782, 866, 935 |
| AluI | AGCT | 8 cut(s) | 74, 164, 174, 425, 434, 782, 866, 935 |
| Alw21I | GWGCWC | 1 cut(s) | 691 |
| AlwI | GGATC | 4 cut(s) | 824, 1029, 1379, 1395 |
| Ama87I | CYCGRG | 2 cut(s) | 240, 783 |
| AoxI | GGCC | 3 cut(s) | 358, 1209, 1423 |
| ApeKI | GCWGC | 2 cut(s) | 187, 1340 |
| ApoI | RAATTY | 2 cut(s) | 78, 726 |
| AseI | ATTAAT | 1 cut(s) | 369 |
| AsiGI | ACCGGT | 1 cut(s) | 1316 |
| AspLEI | GCGC | 3 cut(s) | 104, 181, 567 |
| AspS9I | GGNCC | 2 cut(s) | 463, 1209 |
| AsuC2I | CCSGG | 2 cut(s) | 1427, 1442 |
| AsuHPI | GGTGA | 5 cut(s) | 805, 839, 1088, 1306, 1448 |
| AvaI | CYCGRG | 2 cut(s) | 240, 783 |
| AvaII | GGWCC | 1 cut(s) | 463 |
| BalI | TGGCCA | 1 cut(s) | 360 |
| BanII | GRGCYC | 2 cut(s) | 247, 1131 |
| Bbv12I | GWGCWC | 1 cut(s) | 691 |
| BbvCI | CCTCAGC | 1 cut(s) | 1289 |
| BbvI | GCAGC | 2 cut(s) | 199, 1327 |
| BccI | CCATC | 4 cut(s) | 790, 1408, 1415, 1446 |
| BceAI | ACGGC | 1 cut(s) | 1282 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1182, 1216 |
| BciT130I | CCWGG | 1 cut(s) | 876 |
| BclI | TGATCA | 1 cut(s) | 555 |
| BcnI | CCSGG | 2 cut(s) | 1427, 1442 |
| BfaI | CTAG | 6 cut(s) | 165, 479, 654, 1263, 1365, 1409 |
| BfmI | CTRYAG | 1 cut(s) | 1089 |
| BfoI | RGCGCY | 1 cut(s) | 182 |
| BfrI | CTTAAG | 1 cut(s) | 530 |
| BfuAI | ACCTGC | 1 cut(s) | 462 |
| BglII | AGATCT | 2 cut(s) | 31, 1259 |
| BisI | GCNGC | 4 cut(s) | 188, 1212, 1215, 1341 |
| BlpI | GCTNAGC | 2 cut(s) | 175, 778 |
| BlsI | GCNGC | 4 cut(s) | 189, 1213, 1216, 1342 |
| Bme1390I | CCNGG | 3 cut(s) | 876, 1427, 1442 |
| Bme18I | GGWCC | 1 cut(s) | 463 |
| BmeT110I | CYCGRG | 2 cut(s) | 240, 783 |
| BmgT120I | GGNCC | 2 cut(s) | 463, 1209 |
| BmrFI | CCNGG | 3 cut(s) | 876, 1427, 1442 |
| BmsI | GCATC | 1 cut(s) | 793 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1289 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 175, 778 |
| BpuEI | CTTGAG | 1 cut(s) | 597 |
| BpuMI | CCSGG | 2 cut(s) | 1427, 1442 |
| BsaBI | GATNNNNATC | 1 cut(s) | 717 |
| BsaHI | GRCGYC | 1 cut(s) | 1295 |
| BsaJI | CCNNGG | 2 cut(s) | 466, 875 |
| BsaWI | WCCGGW | 1 cut(s) | 1316 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1249, 1279 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 496, 881 |
| Bse118I | RCCGGY | 1 cut(s) | 1316 |
| Bse1I | ACTGG | 2 cut(s) | 200, 737 |
| Bse3DI | GCAATG | 2 cut(s) | 138, 458 |
| Bse8I | GATNNNNATC | 1 cut(s) | 717 |
| BseBI | CCWGG | 1 cut(s) | 876 |
| BseDI | CCNNGG | 2 cut(s) | 466, 875 |
| BseGI | GGATG | 4 cut(s) | 756, 793, 808, 1426 |
| BseJI | GATNNNNATC | 1 cut(s) | 717 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 496, 881 |
| BseMI | GCAATG | 2 cut(s) | 138, 458 |
| BseMII | CTCAG | 4 cut(s) | 162, 189, 221, 1280 |
| BseNI | ACTGG | 2 cut(s) | 200, 737 |
| BseRI | GAGGAG | 2 cut(s) | 1245, 1248 |
| BseXI | GCAGC | 2 cut(s) | 199, 1327 |
| BseYI | CCCAGC | 1 cut(s) | 587 |
| Bsh1236I | CGCG | 1 cut(s) | 1217 |
| Bsh1285I | CGRYCG | 1 cut(s) | 10 |
| BshFI | GGCC | 3 cut(s) | 360, 1211, 1425 |
| BshTI | ACCGGT | 1 cut(s) | 1316 |
| BsiEI | CGRYCG | 1 cut(s) | 10 |
| BsiHKAI | GWGCWC | 1 cut(s) | 691 |
| BsiHKCI | CYCGRG | 2 cut(s) | 240, 783 |
| BsiSI | CCGG | 3 cut(s) | 1317, 1426, 1441 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 496, 881 |
| BsmI | GAATGC | 3 cut(s) | 25, 143, 317 |
| BsnI | GGCC | 3 cut(s) | 360, 1211, 1425 |
| BsoBI | CYCGRG | 2 cut(s) | 240, 783 |
| Bsp1286I | GDGCHC | 3 cut(s) | 247, 691, 1131 |
| Bsp1407I | TGTACA | 1 cut(s) | 111 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 175, 778 |
| Bsp19I | CCATGG | 1 cut(s) | 466 |
| BspACI | CCGC | 5 cut(s) | 1157, 1212, 1215, 1255, 1349 |
| BspANI | GGCC | 3 cut(s) | 360, 1211, 1425 |
| BspCNI | CTCAG | 4 cut(s) | 161, 188, 220, 1281 |
| BspFNI | CGCG | 1 cut(s) | 1217 |
| BspHI | TCATGA | 2 cut(s) | 633, 1024 |
| BspMI | ACCTGC | 1 cut(s) | 462 |
| BspPI | GGATC | 4 cut(s) | 824, 1029, 1379, 1395 |
| BspTI | CTTAAG | 1 cut(s) | 530 |
| BsrDI | GCAATG | 2 cut(s) | 138, 458 |
| BsrFI | RCCGGY | 1 cut(s) | 1316 |
| BsrGI | TGTACA | 1 cut(s) | 111 |
| BsrI | ACTGG | 2 cut(s) | 200, 737 |
| BssAI | RCCGGY | 1 cut(s) | 1316 |
| BssECI | CCNNGG | 2 cut(s) | 466, 875 |
| BssNI | GRCGYC | 1 cut(s) | 1295 |
| BssT1I | CCWWGG | 1 cut(s) | 466 |
| Bst2UI | CCWGG | 1 cut(s) | 876 |
| Bst4CI | ACNGT | 2 cut(s) | 281, 1250 |
| Bst6I | CTCTTC | 2 cut(s) | 966, 1352 |
| BstACI | GRCGYC | 1 cut(s) | 1295 |
| BstAFI | CTTAAG | 1 cut(s) | 530 |
| BstAUI | TGTACA | 1 cut(s) | 111 |
| BstC8I | GCNNGC | 1 cut(s) | 351 |
| BstDEI | CTNAG | 9 cut(s) | 89, 148, 175, 207, 546, 578, 778, 867, 1289 |
| BstDSI | CCRYGG | 1 cut(s) | 466 |
| BstEII | GGTNACC | 1 cut(s) | 1436 |
| BstF5I | GGATG | 4 cut(s) | 756, 793, 808, 1426 |
| BstFNI | CGCG | 1 cut(s) | 1217 |
| BstH2I | RGCGCY | 1 cut(s) | 182 |
| BstHHI | GCGC | 3 cut(s) | 104, 181, 567 |
| BstMCI | CGRYCG | 1 cut(s) | 10 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 101, 187, 431, 932, 1004, 1013, 1294, 1346 |
| BstNI | CCWGG | 1 cut(s) | 876 |
| BstPI | GGTNACC | 1 cut(s) | 1436 |
| BstSCI | CCNGG | 3 cut(s) | 874, 1425, 1440 |
| BstSFI | CTRYAG | 1 cut(s) | 1089 |
| BstUI | CGCG | 1 cut(s) | 1217 |
| BstV1I | GCAGC | 2 cut(s) | 199, 1327 |
| BstX2I | RGATCY | 4 cut(s) | 31, 1259, 1371, 1400 |
| BstYI | RGATCY | 4 cut(s) | 31, 1259, 1371, 1400 |
| BsuRI | GGCC | 3 cut(s) | 360, 1211, 1425 |
| BtgI | CCRYGG | 1 cut(s) | 466 |
| BtsCI | GGATG | 4 cut(s) | 756, 793, 808, 1426 |
| BtsI | GCAGTG | 2 cut(s) | 391, 612 |
| BtsIMutI | CAGTG | 7 cut(s) | 156, 193, 215, 391, 612, 730, 1246 |
| BveI | ACCTGC | 1 cut(s) | 462 |
| Cac8I | GCNNGC | 1 cut(s) | 351 |
| CciI | TCATGA | 2 cut(s) | 633, 1024 |
| CfoI | GCGC | 3 cut(s) | 104, 181, 567 |
| Cfr10I | RCCGGY | 1 cut(s) | 1316 |
| Cfr13I | GGNCC | 2 cut(s) | 463, 1209 |
| CseI | GACGC | 2 cut(s) | 179, 1303 |
| Csp6I | GTAC | 2 cut(s) | 112, 954 |
| CspAI | ACCGGT | 1 cut(s) | 1316 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 665, 700 |
| CviAII | CATG | 6 cut(s) | 467, 494, 634, 1025, 1124, 1241 |
| CviQI | GTAC | 2 cut(s) | 112, 954 |
| DdeI | CTNAG | 9 cut(s) | 89, 148, 175, 207, 546, 578, 778, 867, 1289 |
| EaeI | YGGCCR | 2 cut(s) | 358, 1423 |
| Eam1104I | CTCTTC | 2 cut(s) | 966, 1352 |
| EarI | CTCTTC | 2 cut(s) | 966, 1352 |
| EciI | GGCGGA | 2 cut(s) | 1146, 1270 |
| Eco130I | CCWWGG | 1 cut(s) | 466 |
| Eco24I | GRGCYC | 2 cut(s) | 247, 1131 |
| Eco47I | GGWCC | 1 cut(s) | 463 |
| Eco57I | CTGAAG | 3 cut(s) | 239, 248, 379 |
| Eco88I | CYCGRG | 2 cut(s) | 240, 783 |
| Eco91I | GGTNACC | 1 cut(s) | 1436 |
| EcoO65I | GGTNACC | 1 cut(s) | 1436 |
| EcoRII | CCWGG | 1 cut(s) | 874 |
| EcoT14I | CCWWGG | 1 cut(s) | 466 |
| EcoT38I | GRGCYC | 2 cut(s) | 247, 1131 |
| ErhI | CCWWGG | 1 cut(s) | 466 |
| FaeI | CATG | 6 cut(s) | 470, 497, 637, 1028, 1127, 1244 |
| FatI | CATG | 6 cut(s) | 466, 493, 633, 1024, 1123, 1240 |
| FbaI | TGATCA | 1 cut(s) | 555 |
| Fnu4HI | GCNGC | 4 cut(s) | 188, 1212, 1215, 1341 |
| FokI | GGATG | 4 cut(s) | 763, 800, 815, 1433 |
| FriOI | GRGCYC | 2 cut(s) | 247, 1131 |
| Fsp4HI | GCNGC | 4 cut(s) | 188, 1212, 1215, 1341 |
| FspBI | CTAG | 6 cut(s) | 165, 479, 654, 1263, 1365, 1409 |
| GlaI | GCGC | 3 cut(s) | 103, 180, 566 |
| GluI | GCNGC | 4 cut(s) | 188, 1212, 1215, 1341 |
| GsaI | CCCAGC | 1 cut(s) | 591 |
| HaeII | RGCGCY | 1 cut(s) | 182 |
| HaeIII | GGCC | 3 cut(s) | 360, 1211, 1425 |
| HapII | CCGG | 3 cut(s) | 1317, 1426, 1441 |
| HgaI | GACGC | 2 cut(s) | 179, 1303 |
| HhaI | GCGC | 3 cut(s) | 104, 181, 567 |
| Hin1I | GRCGYC | 1 cut(s) | 1295 |
| Hin1II | CATG | 6 cut(s) | 470, 497, 637, 1028, 1127, 1244 |
| Hin6I | GCGC | 3 cut(s) | 102, 179, 565 |
| HinP1I | GCGC | 3 cut(s) | 102, 179, 565 |
| HincII | GTYRAC | 1 cut(s) | 1447 |
| HindII | GTYRAC | 1 cut(s) | 1447 |
| HindIII | AAGCTT | 1 cut(s) | 933 |
| HinfI | GANTC | 4 cut(s) | 235, 598, 713, 1044 |
| HpaII | CCGG | 3 cut(s) | 1317, 1426, 1441 |
| HphI | GGTGA | 5 cut(s) | 805, 839, 1088, 1306, 1448 |
| Hpy166II | GTNNAC | 4 cut(s) | 154, 215, 409, 1447 |
| Hpy188I | TCNGA | 4 cut(s) | 336, 712, 1140, 1405 |
| Hpy188III | TCNNGA | 5 cut(s) | 634, 785, 1025, 1398, 1409 |
| Hpy8I | GTNNAC | 4 cut(s) | 154, 215, 409, 1447 |
| Hpy99I | CGWCG | 2 cut(s) | 1140, 1303 |
| HpyAV | CCTTC | 7 cut(s) | 214, 331, 500, 764, 874, 997, 1217 |
| HpyCH4III | ACNGT | 2 cut(s) | 281, 1250 |
| HpyCH4IV | ACGT | 1 cut(s) | 1163 |
| HpyCH4V | TGCA | 6 cut(s) | 23, 95, 143, 315, 451, 1193 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 101, 187, 431, 932, 1004, 1013, 1294, 1346 |
| HpyF3I | CTNAG | 9 cut(s) | 89, 148, 175, 207, 546, 578, 778, 867, 1289 |
| HpySE526I | ACGT | 1 cut(s) | 1163 |
| Hsp92I | GRCGYC | 1 cut(s) | 1295 |
| Hsp92II | CATG | 6 cut(s) | 470, 497, 637, 1028, 1127, 1244 |
| HspAI | GCGC | 3 cut(s) | 102, 179, 565 |
| Ksp22I | TGATCA | 1 cut(s) | 555 |
| LmnI | GCTCC | 1 cut(s) | 71 |
| Lsp1109I | GCAGC | 2 cut(s) | 199, 1327 |
| LweI | GCATC | 1 cut(s) | 793 |
| MaeI | CTAG | 6 cut(s) | 165, 479, 654, 1263, 1365, 1409 |
| MaeII | ACGT | 1 cut(s) | 1163 |
| MaeIII | GTNAC | 5 cut(s) | 191, 852, 1244, 1312, 1436 |
| MboII | GAAGA | 8 cut(s) | 62, 241, 385, 904, 983, 1067, 1076, 1369 |
| MfeI | CAATTG | 1 cut(s) | 942 |
| MflI | RGATCY | 4 cut(s) | 31, 1259, 1371, 1400 |
| MhlI | GDGCHC | 3 cut(s) | 247, 691, 1131 |
| MlsI | TGGCCA | 1 cut(s) | 360 |
| MluCI | AATT | 8 cut(s) | 78, 427, 516, 692, 726, 908, 942, 1059 |
| MluNI | TGGCCA | 1 cut(s) | 360 |
| MlyI | GAGTC | 1 cut(s) | 244 |
| MmeI | TCCRAC | 1 cut(s) | 1118 |
| Mox20I | TGGCCA | 1 cut(s) | 360 |
| MscI | TGGCCA | 1 cut(s) | 360 |
| MseI | TTAA | 4 cut(s) | 369, 531, 542, 1062 |
| MslI | CAYNNNNRTG | 1 cut(s) | 198 |
| Msp20I | TGGCCA | 1 cut(s) | 360 |
| MspCI | CTTAAG | 1 cut(s) | 530 |
| MspI | CCGG | 3 cut(s) | 1317, 1426, 1441 |
| MspR9I | CCNGG | 3 cut(s) | 876, 1427, 1442 |
| MunI | CAATTG | 1 cut(s) | 942 |
| Mva1269I | GAATGC | 3 cut(s) | 25, 143, 317 |
| MvaI | CCWGG | 1 cut(s) | 876 |
| MvnI | CGCG | 1 cut(s) | 1217 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 101, 187, 431, 932, 1004, 1013, 1294, 1346 |
| NciI | CCSGG | 2 cut(s) | 1427, 1442 |
| NcoI | CCATGG | 1 cut(s) | 466 |
| NlaIII | CATG | 6 cut(s) | 470, 497, 637, 1028, 1127, 1244 |
| NmuCI | GTSAC | 5 cut(s) | 191, 852, 1244, 1312, 1436 |
| PaeR7I | CTCGAG | 1 cut(s) | 240 |
| PagI | TCATGA | 2 cut(s) | 633, 1024 |
| PctI | GAATGC | 3 cut(s) | 25, 143, 317 |
| PfeI | GAWTC | 3 cut(s) | 598, 713, 1044 |
| PflFI | GACNNNGTC | 1 cut(s) | 1297 |
| PinAI | ACCGGT | 1 cut(s) | 1316 |
| PkrI | GCNGC | 4 cut(s) | 189, 1213, 1216, 1342 |
| PleI | GAGTC | 1 cut(s) | 243 |
| PpsI | GAGTC | 1 cut(s) | 243 |
| PshBI | ATTAAT | 1 cut(s) | 369 |
| Psp6I | CCWGG | 1 cut(s) | 874 |
| PspEI | GGTNACC | 1 cut(s) | 1436 |
| PspFI | CCCAGC | 1 cut(s) | 587 |
| PspGI | CCWGG | 1 cut(s) | 874 |
| PspPI | GGNCC | 2 cut(s) | 463, 1209 |
| PspXI | VCTCGAGB | 1 cut(s) | 240 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 959, 991 |
| PsuI | RGATCY | 4 cut(s) | 31, 1259, 1371, 1400 |
| PsyI | GACNNNGTC | 1 cut(s) | 1297 |
| RsaI | GTAC | 2 cut(s) | 113, 955 |
| RsaNI | GTAC | 2 cut(s) | 112, 954 |
| RseI | CAYNNNNRTG | 1 cut(s) | 198 |
| SaqAI | TTAA | 4 cut(s) | 369, 531, 542, 1062 |
| SatI | GCNGC | 4 cut(s) | 188, 1212, 1215, 1341 |
| Sau96I | GGNCC | 2 cut(s) | 463, 1209 |
| SchI | GAGTC | 1 cut(s) | 244 |
| ScrFI | CCNGG | 3 cut(s) | 876, 1427, 1442 |
| SduI | GDGCHC | 3 cut(s) | 247, 691, 1131 |
| SfaNI | GCATC | 1 cut(s) | 793 |
| SfcI | CTRYAG | 1 cut(s) | 1089 |
| Sfr274I | CTCGAG | 1 cut(s) | 240 |
| SinI | GGWCC | 1 cut(s) | 463 |
| SlaI | CTCGAG | 1 cut(s) | 240 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 198 |
| SmlI | CTYRAG | 3 cut(s) | 240, 530, 612 |
| SmoI | CTYRAG | 3 cut(s) | 240, 530, 612 |
| Sse9I | AATT | 8 cut(s) | 78, 427, 516, 692, 726, 908, 942, 1059 |
| SsiI | CCGC | 5 cut(s) | 1157, 1212, 1215, 1255, 1349 |
| SspMI | CTAG | 6 cut(s) | 165, 479, 654, 1263, 1365, 1409 |
| StyD4I | CCNGG | 3 cut(s) | 874, 1425, 1440 |
| StyI | CCWWGG | 1 cut(s) | 466 |
| TaaI | ACNGT | 2 cut(s) | 281, 1250 |
| TaiI | ACGT | 1 cut(s) | 1166 |
| TaqI | TCGA | 4 cut(s) | 10, 130, 241, 1202 |
| TasI | AATT | 8 cut(s) | 78, 427, 516, 692, 726, 908, 942, 1059 |
| TatI | WGTACW | 2 cut(s) | 111, 953 |
| TauI | GCSGC | 2 cut(s) | 1214, 1217 |
| TfiI | GAWTC | 3 cut(s) | 598, 713, 1044 |
| Tru1I | TTAA | 4 cut(s) | 369, 531, 542, 1062 |
| Tru9I | TTAA | 4 cut(s) | 369, 531, 542, 1062 |
| TscAI | CASTG | 7 cut(s) | 156, 200, 222, 391, 612, 737, 1253 |
| TseFI | GTSAC | 5 cut(s) | 191, 852, 1244, 1312, 1436 |
| TseI | GCWGC | 2 cut(s) | 187, 1340 |
| Tsp45I | GTSAC | 5 cut(s) | 191, 852, 1244, 1312, 1436 |
| TspDTI | ATGAA | 7 cut(s) | 245, 482, 967, 984, 1016, 1088, 1236 |
| TspRI | CASTG | 7 cut(s) | 156, 200, 222, 391, 612, 737, 1253 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1297 |
| Vha464I | CTTAAG | 1 cut(s) | 530 |
| VpaK11BI | GGWCC | 1 cut(s) | 463 |
| VspI | ATTAAT | 1 cut(s) | 369 |
| XapI | RAATTY | 2 cut(s) | 78, 726 |
| XbaI | TCTAGA | 1 cut(s) | 1408 |
| XhoI | CTCGAG | 1 cut(s) | 240 |
| XspI | CTAG | 6 cut(s) | 165, 479, 654, 1263, 1365, 1409 |