Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 315 |
| Acc36I | ACCTGC | 1 cut(s) | 122 |
| AccB1I | GGYRCC | 1 cut(s) | 249 |
| AciI | CCGC | 2 cut(s) | 617, 679 |
| AclWI | GGATC | 1 cut(s) | 728 |
| AcuI | CTGAAG | 2 cut(s) | 41, 210 |
| AfaI | GTAC | 2 cut(s) | 136, 460 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 419, 645 |
| AflIII | ACRYGT | 1 cut(s) | 46 |
| AgsI | TTSAA | 4 cut(s) | 350, 508, 580, 763 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 92, 124 |
| AluBI | AGCT | 4 cut(s) | 127, 320, 524, 622 |
| AluI | AGCT | 4 cut(s) | 127, 320, 524, 622 |
| AlwI | GGATC | 1 cut(s) | 728 |
| Ama87I | CYCGRG | 2 cut(s) | 150, 413 |
| AoxI | GGCC | 2 cut(s) | 306, 582 |
| ApeKI | GCWGC | 4 cut(s) | 58, 544, 742, 806 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 104, 136 |
| AspLEI | GCGC | 1 cut(s) | 316 |
| AspS9I | GGNCC | 1 cut(s) | 410 |
| AsuC2I | CCSGG | 4 cut(s) | 151, 152, 247, 491 |
| AsuHPI | GGTGA | 2 cut(s) | 139, 716 |
| AvaI | CYCGRG | 2 cut(s) | 150, 413 |
| AvaII | GGWCC | 1 cut(s) | 410 |
| BanI | GGYRCC | 1 cut(s) | 249 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 572, 604 |
| BbsI | GAAGAC | 1 cut(s) | 20 |
| BbvI | GCAGC | 4 cut(s) | 70, 531, 729, 793 |
| BccI | CCATC | 5 cut(s) | 252, 331, 413, 701, 796 |
| BcnI | CCSGG | 4 cut(s) | 151, 152, 247, 491 |
| BfmI | CTRYAG | 1 cut(s) | 807 |
| BfuAI | ACCTGC | 1 cut(s) | 122 |
| BisI | GCNGC | 4 cut(s) | 59, 545, 743, 807 |
| BlsI | GCNGC | 4 cut(s) | 60, 546, 744, 808 |
| Bme1390I | CCNGG | 4 cut(s) | 151, 152, 247, 491 |
| Bme18I | GGWCC | 1 cut(s) | 410 |
| BmeT110I | CYCGRG | 2 cut(s) | 150, 413 |
| BmgT120I | GGNCC | 1 cut(s) | 410 |
| BmiI | GGNNCC | 3 cut(s) | 251, 412, 488 |
| BmrFI | CCNGG | 4 cut(s) | 151, 152, 247, 491 |
| BmsI | GCATC | 2 cut(s) | 366, 644 |
| BoxI | GACNNNNGTC | 1 cut(s) | 556 |
| BpiI | GAAGAC | 1 cut(s) | 20 |
| BpuMI | CCSGG | 4 cut(s) | 151, 152, 247, 491 |
| BsaAI | YACGTR | 1 cut(s) | 645 |
| BsaJI | CCNNGG | 5 cut(s) | 150, 204, 253, 414, 737 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 440, 470 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 419, 645 |
| Bse1I | ACTGG | 1 cut(s) | 803 |
| Bse3DI | GCAATG | 1 cut(s) | 309 |
| BseDI | CCNNGG | 5 cut(s) | 150, 204, 253, 414, 737 |
| BseGI | GGATG | 4 cut(s) | 263, 424, 635, 807 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 419, 645 |
| BseMI | GCAATG | 1 cut(s) | 309 |
| BseMII | CTCAG | 1 cut(s) | 614 |
| BseNI | ACTGG | 1 cut(s) | 803 |
| BseRI | GAGGAG | 1 cut(s) | 224 |
| BseXI | GCAGC | 4 cut(s) | 70, 531, 729, 793 |
| BsgI | GTGCAG | 1 cut(s) | 530 |
| BshFI | GGCC | 2 cut(s) | 308, 584 |
| BshNI | GGYRCC | 1 cut(s) | 249 |
| BsiHKCI | CYCGRG | 2 cut(s) | 150, 413 |
| BsiSI | CCGG | 3 cut(s) | 151, 247, 490 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 419, 645 |
| BsnI | GGCC | 2 cut(s) | 308, 584 |
| BsoBI | CYCGRG | 2 cut(s) | 150, 413 |
| Bsp143I | GATC | 1 cut(s) | 733 |
| Bsp19I | CCATGG | 1 cut(s) | 737 |
| BspACI | CCGC | 2 cut(s) | 617, 679 |
| BspANI | GGCC | 2 cut(s) | 308, 584 |
| BspCNI | CTCAG | 1 cut(s) | 615 |
| BspLI | GGNNCC | 3 cut(s) | 251, 412, 488 |
| BspMAI | CTGCAG | 1 cut(s) | 811 |
| BspMI | ACCTGC | 1 cut(s) | 122 |
| BspPI | GGATC | 1 cut(s) | 728 |
| BspT107I | GGYRCC | 1 cut(s) | 249 |
| BsrDI | GCAATG | 1 cut(s) | 309 |
| BsrI | ACTGG | 1 cut(s) | 803 |
| BssECI | CCNNGG | 5 cut(s) | 150, 204, 253, 414, 737 |
| BssMI | GATC | 1 cut(s) | 733 |
| BssT1I | CCWWGG | 3 cut(s) | 204, 253, 737 |
| Bst4CI | ACNGT | 1 cut(s) | 602 |
| BstBAI | YACGTR | 1 cut(s) | 645 |
| BstC8I | GCNNGC | 2 cut(s) | 129, 318 |
| BstDEI | CTNAG | 3 cut(s) | 6, 520, 623 |
| BstDSI | CCRYGG | 1 cut(s) | 737 |
| BstEII | GGTNACC | 1 cut(s) | 145 |
| BstF5I | GGATG | 4 cut(s) | 263, 424, 635, 807 |
| BstHHI | GCGC | 1 cut(s) | 316 |
| BstKTI | GATC | 1 cut(s) | 736 |
| BstMBI | GATC | 1 cut(s) | 733 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 521, 685, 748 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 556 |
| BstPI | GGTNACC | 1 cut(s) | 145 |
| BstSCI | CCNGG | 4 cut(s) | 149, 150, 245, 489 |
| BstSFI | CTRYAG | 1 cut(s) | 807 |
| BstV1I | GCAGC | 4 cut(s) | 70, 531, 729, 793 |
| BstV2I | GAAGAC | 1 cut(s) | 20 |
| BsuRI | GGCC | 2 cut(s) | 308, 584 |
| BtgI | CCRYGG | 1 cut(s) | 737 |
| BtsCI | GGATG | 4 cut(s) | 263, 424, 635, 807 |
| BveI | ACCTGC | 1 cut(s) | 122 |
| Cac8I | GCNNGC | 2 cut(s) | 129, 318 |
| CfoI | GCGC | 1 cut(s) | 316 |
| Cfr13I | GGNCC | 1 cut(s) | 410 |
| Cfr9I | CCCGGG | 1 cut(s) | 150 |
| Csp6I | GTAC | 2 cut(s) | 135, 459 |
| CviAII | CATG | 7 cut(s) | 164, 388, 444, 610, 738, 748, 790 |
| CviQI | GTAC | 2 cut(s) | 135, 459 |
| DdeI | CTNAG | 3 cut(s) | 6, 520, 623 |
| DpnI | GATC | 1 cut(s) | 735 |
| DpnII | GATC | 1 cut(s) | 733 |
| Eco130I | CCWWGG | 3 cut(s) | 204, 253, 737 |
| Eco47I | GGWCC | 1 cut(s) | 410 |
| Eco57I | CTGAAG | 2 cut(s) | 41, 210 |
| Eco88I | CYCGRG | 2 cut(s) | 150, 413 |
| Eco91I | GGTNACC | 1 cut(s) | 145 |
| EcoO65I | GGTNACC | 1 cut(s) | 145 |
| EcoT14I | CCWWGG | 3 cut(s) | 204, 253, 737 |
| EcoT22I | ATGCAT | 2 cut(s) | 381, 501 |
| ErhI | CCWWGG | 3 cut(s) | 204, 253, 737 |
| FaeI | CATG | 7 cut(s) | 167, 391, 447, 613, 741, 751, 793 |
| FatI | CATG | 7 cut(s) | 163, 387, 443, 609, 737, 747, 789 |
| Fnu4HI | GCNGC | 4 cut(s) | 59, 545, 743, 807 |
| FokI | GGATG | 4 cut(s) | 270, 431, 622, 814 |
| Fsp4HI | GCNGC | 4 cut(s) | 59, 545, 743, 807 |
| FspI | TGCGCA | 1 cut(s) | 315 |
| GlaI | GCGC | 1 cut(s) | 315 |
| GluI | GCNGC | 4 cut(s) | 59, 545, 743, 807 |
| HaeIII | GGCC | 2 cut(s) | 308, 584 |
| HapII | CCGG | 3 cut(s) | 151, 247, 490 |
| HhaI | GCGC | 1 cut(s) | 316 |
| Hin1II | CATG | 7 cut(s) | 167, 391, 447, 613, 741, 751, 793 |
| Hin6I | GCGC | 1 cut(s) | 314 |
| HinP1I | GCGC | 1 cut(s) | 314 |
| HinfI | GANTC | 2 cut(s) | 557, 821 |
| HpaII | CCGG | 3 cut(s) | 151, 247, 490 |
| HphI | GGTGA | 2 cut(s) | 139, 716 |
| Hpy166II | GTNNAC | 3 cut(s) | 182, 410, 459 |
| Hpy188I | TCNGA | 3 cut(s) | 55, 357, 826 |
| Hpy188III | TCNNGA | 1 cut(s) | 845 |
| Hpy8I | GTNNAC | 3 cut(s) | 182, 410, 459 |
| HpyAV | CCTTC | 3 cut(s) | 16, 336, 574 |
| HpyCH4III | ACNGT | 1 cut(s) | 602 |
| HpyCH4IV | ACGT | 3 cut(s) | 46, 272, 644 |
| HpyCH4V | TGCA | 8 cut(s) | 34, 107, 379, 499, 547, 569, 635, 809 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 521, 685, 748 |
| HpyF3I | CTNAG | 3 cut(s) | 6, 520, 623 |
| HpySE526I | ACGT | 3 cut(s) | 46, 272, 644 |
| Hsp92II | CATG | 7 cut(s) | 167, 391, 447, 613, 741, 751, 793 |
| HspAI | GCGC | 1 cut(s) | 314 |
| Kzo9I | GATC | 1 cut(s) | 733 |
| LmnI | GCTCC | 2 cut(s) | 448, 619 |
| Lsp1109I | GCAGC | 4 cut(s) | 70, 531, 729, 793 |
| LweI | GCATC | 2 cut(s) | 366, 644 |
| MaeII | ACGT | 3 cut(s) | 46, 272, 644 |
| MaeIII | GTNAC | 1 cut(s) | 145 |
| MalI | GATC | 1 cut(s) | 735 |
| MboI | GATC | 1 cut(s) | 733 |
| MboII | GAAGA | 2 cut(s) | 20, 247 |
| MluCI | AATT | 5 cut(s) | 67, 467, 508, 699, 754 |
| MlyI | GAGTC | 1 cut(s) | 566 |
| Mph1103I | ATGCAT | 2 cut(s) | 381, 501 |
| MseI | TTAA | 2 cut(s) | 66, 227 |
| MspI | CCGG | 3 cut(s) | 151, 247, 490 |
| MspR9I | CCNGG | 4 cut(s) | 151, 152, 247, 491 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 521, 685, 748 |
| NciI | CCSGG | 4 cut(s) | 151, 152, 247, 491 |
| NcoI | CCATGG | 1 cut(s) | 737 |
| NdeII | GATC | 1 cut(s) | 733 |
| NlaIII | CATG | 7 cut(s) | 167, 391, 447, 613, 741, 751, 793 |
| NlaIV | GGNNCC | 3 cut(s) | 251, 412, 488 |
| NmuCI | GTSAC | 1 cut(s) | 145 |
| NsbI | TGCGCA | 1 cut(s) | 315 |
| NsiI | ATGCAT | 2 cut(s) | 381, 501 |
| PfeI | GAWTC | 1 cut(s) | 821 |
| PflFI | GACNNNGTC | 1 cut(s) | 274 |
| PfoI | TCCNGGA | 1 cut(s) | 489 |
| PkrI | GCNGC | 4 cut(s) | 60, 546, 744, 808 |
| PleI | GAGTC | 1 cut(s) | 565 |
| PpsI | GAGTC | 1 cut(s) | 565 |
| Ppu21I | YACGTR | 1 cut(s) | 645 |
| PshAI | GACNNNNGTC | 1 cut(s) | 556 |
| PspEI | GGTNACC | 1 cut(s) | 145 |
| PspN4I | GGNNCC | 3 cut(s) | 251, 412, 488 |
| PspPI | GGNCC | 1 cut(s) | 410 |
| PstI | CTGCAG | 1 cut(s) | 811 |
| PsyI | GACNNNGTC | 1 cut(s) | 274 |
| RsaI | GTAC | 2 cut(s) | 136, 460 |
| RsaNI | GTAC | 2 cut(s) | 135, 459 |
| SaqAI | TTAA | 2 cut(s) | 66, 227 |
| SatI | GCNGC | 4 cut(s) | 59, 545, 743, 807 |
| Sau3AI | GATC | 1 cut(s) | 733 |
| Sau96I | GGNCC | 1 cut(s) | 410 |
| SchI | GAGTC | 1 cut(s) | 566 |
| ScrFI | CCNGG | 4 cut(s) | 151, 152, 247, 491 |
| SfaNI | GCATC | 2 cut(s) | 366, 644 |
| SfcI | CTRYAG | 1 cut(s) | 807 |
| SinI | GGWCC | 1 cut(s) | 410 |
| SmaI | CCCGGG | 1 cut(s) | 152 |
| Sse9I | AATT | 5 cut(s) | 67, 467, 508, 699, 754 |
| SsiI | CCGC | 2 cut(s) | 617, 679 |
| StyD4I | CCNGG | 4 cut(s) | 149, 150, 245, 489 |
| StyI | CCWWGG | 3 cut(s) | 204, 253, 737 |
| TaaI | ACNGT | 1 cut(s) | 602 |
| TaiI | ACGT | 3 cut(s) | 49, 275, 647 |
| TasI | AATT | 5 cut(s) | 67, 467, 508, 699, 754 |
| TatI | WGTACW | 1 cut(s) | 458 |
| TfiI | GAWTC | 1 cut(s) | 821 |
| Tru1I | TTAA | 2 cut(s) | 66, 227 |
| Tru9I | TTAA | 2 cut(s) | 66, 227 |
| TseFI | GTSAC | 1 cut(s) | 145 |
| TseI | GCWGC | 4 cut(s) | 58, 544, 742, 806 |
| Tsp45I | GTSAC | 1 cut(s) | 145 |
| TspDTI | ATGAA | 2 cut(s) | 57, 598 |
| TspMI | CCCGGG | 1 cut(s) | 150 |
| Tth111I | GACNNNGTC | 1 cut(s) | 274 |
| VpaK11BI | GGWCC | 1 cut(s) | 410 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 704 |
| XmaI | CCCGGG | 1 cut(s) | 150 |
| Zsp2I | ATGCAT | 2 cut(s) | 381, 501 |